RNA–Protein interactions for RNA: ENST00000473376.1

CHD3-209, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 562 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-209ENST00000473376 SMIM2Q9BVW6 85 aa8.31□□□□□ -1.08
CHD3-209ENST00000473376 PSORS1C2Q9UIG4 136 aa8.31□□□□□ -1.08
CHD3-209ENST00000473376 LRP2P98164 4655 aa8.31□□□□□ -1.08
CHD3-209ENST00000473376 NDUFA1O15239 70 aa8.3□□□□□ -1.08
CHD3-209ENST00000473376 MT-ND6P03923 174 aa8.3□□□□□ -1.08
CHD3-209ENST00000473376 FAM104AQ969W3 186 aa8.3□□□□□ -1.08
CHD3-209ENST00000473376 PYGO1Q9Y3Y4 419 aa8.3□□□□□ -1.08
CHD3-209ENST00000473376 HBBP68871 147 aa8.29□□□□□ -1.08
CHD3-209ENST00000473376 RPL18AQ02543 176 aaKnown RBP8.29□□□□□ -1.08
CHD3-209ENST00000473376 ODF1Q14990 250 aa8.29□□□□□ -1.08
CHD3-209ENST00000473376 PEA15Q15121 130 aa8.29□□□□□ -1.08
CHD3-209ENST00000473376 ADIRFQ15847 76 aa8.29□□□□□ -1.08
CHD3-209ENST00000473376 RNASE13Q5GAN3 156 aaKnown RBP8.29□□□□□ -1.08
CHD3-209ENST00000473376 DIRC1Q969H9 104 aa8.29□□□□□ -1.08
CHD3-209ENST00000473376 A0A1B0GXF2 115 aa8.28□□□□□ -1.08
CHD3-209ENST00000473376 LINC01561Q8N1V8 128 aa8.28□□□□□ -1.08
CHD3-209ENST00000473376 ORAOV1Q8WV07 137 aa8.28□□□□□ -1.08
CHD3-209ENST00000473376 A0A087WZ39 114 aa8.27□□□□□ -1.09
CHD3-209ENST00000473376 PRSS47A8MTI9 375 aa8.27□□□□□ -1.09
CHD3-209ENST00000473376 RPL39P62891 51 aaKnown RBP8.27□□□□□ -1.09
CHD3-209ENST00000473376 C1orf137Q5JT78 98 aa8.27□□□□□ -1.09
CHD3-209ENST00000473376 ATP5L2Q7Z4Y8 100 aa8.27□□□□□ -1.09
CHD3-209ENST00000473376 LAMTOR2Q9Y2Q5 125 aa8.27□□□□□ -1.09
CHD3-209ENST00000473376 TGIF2-C20orf24A0A0A6YYL0 155 aa8.26□□□□□ -1.09
CHD3-209ENST00000473376 TRBV30A0A0K0K1B3 111 aa8.26□□□□□ -1.09
CHD3-209ENST00000473376 D6R8Y8 96 aa8.26□□□□□ -1.09
CHD3-209ENST00000473376 IGLV7-43P04211 117 aa8.26□□□□□ -1.09
CHD3-209ENST00000473376 NPSP0C0P6 89 aa8.26□□□□□ -1.09
CHD3-209ENST00000473376 RAB5AP20339 215 aa8.26□□□□□ -1.09
CHD3-209ENST00000473376 IFI27P40305 119 aaPredicted RBP8.26□□□□□ -1.09
CHD3-209ENST00000473376 ORMDL3Q8N138 153 aa8.26□□□□□ -1.09
CHD3-209ENST00000473376 OPRPNQ99935 248 aaPredicted RBP8.26□□□□□ -1.09
CHD3-209ENST00000473376 IFITM10A6NMD0 228 aa8.25□□□□□ -1.09
CHD3-209ENST00000473376 C9JQL5 133 aa8.25□□□□□ -1.09
CHD3-209ENST00000473376 PHF5AQ7RTV0 110 aaKnown RBP8.25□□□□□ -1.09
CHD3-209ENST00000473376 NPYP01303 97 aa8.24□□□□□ -1.09
CHD3-209ENST00000473376 KIAA0087Q14695 138 aa8.24□□□□□ -1.09
CHD3-209ENST00000473376 RNF213Q63HN8 5207 aa8.24□□□□□ -1.09
CHD3-209ENST00000473376 IGLV1-50A0A075B6I6 118 aa8.23□□□□□ -1.09
CHD3-209ENST00000473376 H0Y9J4 135 aa8.23□□□□□ -1.09
CHD3-209ENST00000473376 K7EMI3 77 aa8.23□□□□□ -1.09
CHD3-209ENST00000473376 LINC00242Q5T6M2 205 aa8.23□□□□□ -1.09
CHD3-209ENST00000473376 UNQ6190/PRO20217Q6UXQ8 127 aa8.23□□□□□ -1.09
CHD3-209ENST00000473376 TMEM136Q6ZRR5 245 aa8.23□□□□□ -1.09
CHD3-209ENST00000473376 C6orf48Q9UBA6 75 aa8.23□□□□□ -1.09
CHD3-209ENST00000473376 hCG_2014768A0A024R1R8 64 aa8.22□□□□□ -1.09
CHD3-209ENST00000473376 NDUFC2-KCTD14E9PQ53 114 aa8.22□□□□□ -1.09
CHD3-209ENST00000473376 C10orf25Q5T742 122 aa8.22□□□□□ -1.09
CHD3-209ENST00000473376 MRPL54Q6P161 138 aaKnown RBP8.22□□□□□ -1.09
CHD3-209ENST00000473376 TMEM141Q96I45 108 aa8.22□□□□□ -1.09
CHD3-209ENST00000473376 IGLV4-3A0A075B6K6 122 aa8.21□□□□□ -1.1
CHD3-209ENST00000473376 PRELID3AQ96N28 172 aa8.21□□□□□ -1.1
CHD3-209ENST00000473376 SRSF3P84103 164 aaKnown RBP8.2□□□□□ -1.1
CHD3-209ENST00000473376 TEX43Q6ZNM6 134 aa8.2□□□□□ -1.1
CHD3-209ENST00000473376 FAM19A3Q7Z5A8 133 aa8.2□□□□□ -1.1
CHD3-209ENST00000473376 C2orf88Q9BSF0 95 aa8.2□□□□□ -1.1
CHD3-209ENST00000473376 G0S2P27469 103 aa8.19□□□□□ -1.1
CHD3-209ENST00000473376 RPL13AP40429 203 aaKnown RBP8.19□□□□□ -1.1
CHD3-209ENST00000473376 UBE2D1P51668 147 aa8.19□□□□□ -1.1
CHD3-209ENST00000473376 PNRC1Q12796 327 aaPredicted RBP8.19□□□□□ -1.1
CHD3-209ENST00000473376 PACRGQ96M98 296 aaPredicted RBP8.19□□□□□ -1.1
CHD3-209ENST00000473376 CARHSP1Q9Y2V2 147 aaKnown RBP8.19□□□□□ -1.1
CHD3-209ENST00000473376 FAM168BA1KXE4 195 aa8.18□□□□□ -1.1
CHD3-209ENST00000473376 SEC11AP67812 179 aa8.18□□□□□ -1.1
CHD3-209ENST00000473376 GAGE2EQ4V326 116 aa8.18□□□□□ -1.1
CHD3-209ENST00000473376 ORMDL2Q53FV1 153 aa8.18□□□□□ -1.1
CHD3-209ENST00000473376 PAPPA-AS1Q5QFB9 102 aa8.18□□□□□ -1.1
CHD3-209ENST00000473376 Q6ZN92 141 aa8.18□□□□□ -1.1
CHD3-209ENST00000473376 KRTAP7-1Q8IUC3 87 aa8.18□□□□□ -1.1
CHD3-209ENST00000473376 AMELXQ99217 191 aa8.18□□□□□ -1.1
CHD3-209ENST00000473376 MAP1LC3AQ9H492 121 aa8.18□□□□□ -1.1
CHD3-209ENST00000473376 GAGE2DQ9UEU5 116 aa8.18□□□□□ -1.1
CHD3-209ENST00000473376 CYSLTR1Q9Y271 337 aa8.18□□□□□ -1.1
CHD3-209ENST00000473376 M0QXV9 152 aa8.17□□□□□ -1.1
CHD3-209ENST00000473376 KRTAP1-4P0C5Y4 121 aa8.17□□□□□ -1.1
CHD3-209ENST00000473376 FAM19A5Q7Z5A7 132 aaPredicted RBP8.17□□□□□ -1.1
CHD3-209ENST00000473376 Q8N8P6 123 aa8.17□□□□□ -1.1
CHD3-209ENST00000473376 PRR26Q8N8Z3 221 aa8.17□□□□□ -1.1
CHD3-209ENST00000473376 KRTAP11-1Q8IUC1 163 aa8.16□□□□□ -1.1
CHD3-209ENST00000473376 Q8IZM0 81 aa8.16□□□□□ -1.1
CHD3-209ENST00000473376 ANAPC16Q96DE5 110 aa8.16□□□□□ -1.1
CHD3-209ENST00000473376 VCX2Q9H322 139 aa8.16□□□□□ -1.1
CHD3-209ENST00000473376 IGIPA6NJ69 53 aa8.15□□□□□ -1.1
CHD3-209ENST00000473376 NUPR1O60356 82 aa8.15□□□□□ -1.1
CHD3-209ENST00000473376 UBE2BP63146 152 aa8.15□□□□□ -1.1
CHD3-209ENST00000473376 C9orf129Q5T035 196 aaKnown RBP8.15□□□□□ -1.1
CHD3-209ENST00000473376 C2orf66Q6UXQ4 117 aa8.15□□□□□ -1.1
CHD3-209ENST00000473376 ZNF861PO60384 105 aa8.14□□□□□ -1.11
CHD3-209ENST00000473376 MT-ND4LP03901 98 aa8.14□□□□□ -1.11
CHD3-209ENST00000473376 PRSS2P07478 247 aa8.14□□□□□ -1.11
CHD3-209ENST00000473376 CKS1BP61024 79 aa8.14□□□□□ -1.11
CHD3-209ENST00000473376 HERVK_113P63121 156 aa8.14□□□□□ -1.11
CHD3-209ENST00000473376 LBHQ53QV2 105 aaPredicted RBP8.14□□□□□ -1.11
CHD3-209ENST00000473376 C2orf82Q6UX34 121 aa8.14□□□□□ -1.11
CHD3-209ENST00000473376 NXT2Q9NPJ8 142 aaKnown RBP8.14□□□□□ -1.11
CHD3-209ENST00000473376 TP73-AS1Q9UF72 201 aa8.14□□□□□ -1.11
CHD3-209ENST00000473376 LINC01549A6NIU2 74 aa8.13□□□□□ -1.11
CHD3-209ENST00000473376 CXCL5P42830 114 aa8.13□□□□□ -1.11
CHD3-209ENST00000473376 C6orf226Q5I0X4 101 aa8.13□□□□□ -1.11
CHD3-209ENST00000473376 LINC00173Q6ZV60 143 aa8.13□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 159.3 ms