RNA–Protein interactions for RNA: ENST00000472308.1

SHH-205, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 504 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-205ENST00000472308 TMEM191AQ9H0A3 160 aa10.69□□□□□ -0.7
SHH-205ENST00000472308 AMN1Q8IY45 258 aa10.68□□□□□ -0.7
SHH-205ENST00000472308 KANTRA0A1W2PQU2 76 aa10.67□□□□□ -0.7
SHH-205ENST00000472308 NDUFC2-KCTD14E9PQ53 114 aa10.67□□□□□ -0.7
SHH-205ENST00000472308 KRTAP13-2Q52LG2 175 aa10.67□□□□□ -0.7
SHH-205ENST00000472308 NRACQ8N912 160 aa10.67□□□□□ -0.7
SHH-205ENST00000472308 GATCO43716 136 aaKnown RBP10.66□□□□□ -0.7
SHH-205ENST00000472308 NUPR1O60356 82 aa10.66□□□□□ -0.7
SHH-205ENST00000472308 SUMO2P61956 95 aaKnown RBP10.66□□□□□ -0.7
SHH-205ENST00000472308 CTDSP1Q9GZU7 261 aa10.66□□□□□ -0.7
SHH-205ENST00000472308 ANAPC11Q9NYG5 84 aa10.66□□□□□ -0.7
SHH-205ENST00000472308 HMSDA8MTL9 139 aa10.65□□□□□ -0.7
SHH-205ENST00000472308 A8MWL6 223 aa10.65□□□□□ -0.7
SHH-205ENST00000472308 C2orf82Q6UX34 121 aa10.65□□□□□ -0.7
SHH-205ENST00000472308 IGLV7-46A0A075B6I9 117 aa10.64□□□□□ -0.71
SHH-205ENST00000472308 TRBV30A0A0K0K1B3 111 aa10.64□□□□□ -0.71
SHH-205ENST00000472308 RPL39P62891 51 aaKnown RBP10.64□□□□□ -0.71
SHH-205ENST00000472308 FAM231DQ6ZW35 169 aa10.64□□□□□ -0.71
SHH-205ENST00000472308 KIR2DL4Q99706 377 aa10.64□□□□□ -0.71
SHH-205ENST00000472308 A0A1B0GUT8 65 aa10.63□□□□□ -0.71
SHH-205ENST00000472308 TEX46H3BTG2 121 aa10.63□□□□□ -0.71
SHH-205ENST00000472308 CT83Q5H943 113 aa10.63□□□□□ -0.71
SHH-205ENST00000472308 C22orf24Q9Y442 160 aa10.63□□□□□ -0.71
SHH-205ENST00000472308 BORCS7Q96B45 105 aa10.62□□□□□ -0.71
SHH-205ENST00000472308 HIGD1CA8MV81 97 aa10.61□□□□□ -0.71
SHH-205ENST00000472308 RPL28P46779 137 aaKnown RBP10.61□□□□□ -0.71
SHH-205ENST00000472308 LINC00173Q6ZV60 143 aa10.61□□□□□ -0.71
SHH-205ENST00000472308 TMEM18Q96B42 140 aa10.61□□□□□ -0.71
SHH-205ENST00000472308 IFITM10A6NMD0 228 aa10.6□□□□□ -0.71
SHH-205ENST00000472308 BCE1O60756 84 aa10.6□□□□□ -0.71
SHH-205ENST00000472308 LINC00304Q8N9R0 145 aa10.6□□□□□ -0.71
SHH-205ENST00000472308 LINC01547P58512 204 aaPredicted RBP10.59□□□□□ -0.71
SHH-205ENST00000472308 MRPS36P82909 103 aaKnown RBP10.59□□□□□ -0.71
SHH-205ENST00000472308 LINC00242Q5T6M2 205 aa10.59□□□□□ -0.71
SHH-205ENST00000472308 PPP1R17O96001 155 aa10.58□□□□□ -0.72
SHH-205ENST00000472308 HBBP68871 147 aa10.58□□□□□ -0.72
SHH-205ENST00000472308 LINC00469Q8N7U9 141 aa10.58□□□□□ -0.72
SHH-205ENST00000472308 SPANXA1Q9NS26 97 aa10.58□□□□□ -0.72
SHH-205ENST00000472308 TGIF2-C20orf24A0A0A6YYL0 155 aa10.57□□□□□ -0.72
SHH-205ENST00000472308 PACRGQ96M98 296 aaPredicted RBP10.57□□□□□ -0.72
SHH-205ENST00000472308 KRTAP4-1Q9BYQ7 146 aa10.57□□□□□ -0.72
SHH-205ENST00000472308 PPP1R2P9O14990 202 aa10.56□□□□□ -0.72
SHH-205ENST00000472308 LBHQ53QV2 105 aaPredicted RBP10.56□□□□□ -0.72
SHH-205ENST00000472308 PPDPFQ9H3Y8 114 aa10.56□□□□□ -0.72
SHH-205ENST00000472308 XAGE1AQ9HD64 81 aa10.56□□□□□ -0.72
SHH-205ENST00000472308 TAGLN2P37802 199 aaKnown RBP10.55□□□□□ -0.72
SHH-205ENST00000472308 ZNF727A8MUV8 499 aa10.54□□□□□ -0.72
SHH-205ENST00000472308 MRPL51Q4U2R6 128 aaKnown RBP10.54□□□□□ -0.72
SHH-205ENST00000472308 MRPL55Q7Z7F7 128 aaKnown RBP10.54□□□□□ -0.72
SHH-205ENST00000472308 KRTAP13-1Q8IUC0 172 aa10.54□□□□□ -0.72
SHH-205ENST00000472308 RPL32P62910 135 aaKnown RBP10.53□□□□□ -0.72
SHH-205ENST00000472308 SRSF3P84103 164 aaKnown RBP10.53□□□□□ -0.72
SHH-205ENST00000472308 FAM229BQ4G0N7 80 aa10.53□□□□□ -0.72
SHH-205ENST00000472308 C20orf78Q9BR46 151 aa10.53□□□□□ -0.72
SHH-205ENST00000472308 TP73-AS1Q9UF72 201 aa10.53□□□□□ -0.72
SHH-205ENST00000472308 TRBV24-1A0A075B6N3 115 aa10.51□□□□□ -0.73
SHH-205ENST00000472308 TMEM250H0YL14 139 aa10.51□□□□□ -0.73
SHH-205ENST00000472308 ASB16-AS1Q495Z4 193 aa10.51□□□□□ -0.73
SHH-205ENST00000472308 FAM104BQ5XKR9 115 aa10.51□□□□□ -0.73
SHH-205ENST00000472308 TCAPO15273 167 aa10.5□□□□□ -0.73
SHH-205ENST00000472308 RIGQ13278 110 aa10.5□□□□□ -0.73
SHH-205ENST00000472308 SMIM2Q9BVW6 85 aa10.5□□□□□ -0.73
SHH-205ENST00000472308 RPL37AP8A6NKH3 93 aa10.49□□□□□ -0.73
SHH-205ENST00000472308 CTAG1AP78358 180 aa10.49□□□□□ -0.73
SHH-205ENST00000472308 LINC01551Q86U37 167 aa10.49□□□□□ -0.73
SHH-205ENST00000472308 LINC01561Q8N1V8 128 aa10.48□□□□□ -0.73
SHH-205ENST00000472308 LINC00167Q96N53 147 aa10.48□□□□□ -0.73
SHH-205ENST00000472308 IGLV4-3A0A075B6K6 122 aa10.47□□□□□ -0.73
SHH-205ENST00000472308 TNFRSF6BO95407 300 aa10.47□□□□□ -0.73
SHH-205ENST00000472308 OSTCQ9NRP0 149 aa10.47□□□□□ -0.73
SHH-205ENST00000472308 LINC00862A6NCI5 91 aa10.46□□□□□ -0.73
SHH-205ENST00000472308 CEBPGP53567 150 aa10.46□□□□□ -0.73
SHH-205ENST00000472308 V9GYV3 84 aa10.46□□□□□ -0.73
SHH-205ENST00000472308 IGKV2D-26A0A0A0MRZ7 120 aa10.45□□□□□ -0.74
SHH-205ENST00000472308 CKS2P33552 79 aa10.45□□□□□ -0.74
SHH-205ENST00000472308 CKS1BP61024 79 aa10.45□□□□□ -0.74
SHH-205ENST00000472308 KRTAP13-3Q3SY46 172 aa10.45□□□□□ -0.74
SHH-205ENST00000472308 TOMM7Q9P0U1 55 aa10.45□□□□□ -0.74
SHH-205ENST00000472308 GAGE10A6NGK3 116 aa10.44□□□□□ -0.74
SHH-205ENST00000472308 IFI27P40305 119 aaPredicted RBP10.44□□□□□ -0.74
SHH-205ENST00000472308 RGS21Q2M5E4 152 aa10.44□□□□□ -0.74
SHH-205ENST00000472308 PYGO1Q9Y3Y4 419 aa10.44□□□□□ -0.74
SHH-205ENST00000472308 NPYP01303 97 aa10.43□□□□□ -0.74
SHH-205ENST00000472308 PRSS2P07478 247 aa10.43□□□□□ -0.74
SHH-205ENST00000472308 UBE2AP49459 152 aa10.43□□□□□ -0.74
SHH-205ENST00000472308 LCE2CQ5TA81 110 aa10.43□□□□□ -0.74
SHH-205ENST00000472308 Q8IZM0 81 aa10.43□□□□□ -0.74
SHH-205ENST00000472308 SMIM7Q9BQ49 75 aa10.43□□□□□ -0.74
SHH-205ENST00000472308 C6orf226Q5I0X4 101 aa10.42□□□□□ -0.74
SHH-205ENST00000472308 ZC2HC1BQ5TFG8 222 aa10.42□□□□□ -0.74
SHH-205ENST00000472308 TMEM141Q96I45 108 aa10.42□□□□□ -0.74
SHH-205ENST00000472308 D6R8Y8 96 aa10.41□□□□□ -0.74
SHH-205ENST00000472308 Q6ZN92 141 aa10.41□□□□□ -0.74
SHH-205ENST00000472308 FP248Q71RG6 208 aaPredicted RBP10.41□□□□□ -0.74
SHH-205ENST00000472308 C3orf22Q8N5N4 141 aa10.41□□□□□ -0.74
SHH-205ENST00000472308 EIF5A2Q9GZV4 153 aaKnown RBP10.41□□□□□ -0.74
SHH-205ENST00000472308 NAT8BQ9UHF3 227 aa10.41□□□□□ -0.74
SHH-205ENST00000472308 LINC00337Q8N6G1 96 aa10.4□□□□□ -0.74
SHH-205ENST00000472308 ALKBH7Q9BT30 221 aaPredicted RBP10.4□□□□□ -0.74
SHH-205ENST00000472308 F8VRH5 84 aa10.39□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 55.2 ms