RNA–Protein interactions for RNA: ENST00000468937.2

SYNE1-218, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 688 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-218ENST00000468937 AMN1Q8IY45 258 aa2.51□□□□□ -2.01
SYNE1-218ENST00000468937 ZFP82Q8N141 532 aa2.51□□□□□ -2.01
SYNE1-218ENST00000468937 Q8NAQ8 132 aa2.51□□□□□ -2.01
SYNE1-218ENST00000468937 HIST1H2BHQ93079 126 aa2.51□□□□□ -2.01
SYNE1-218ENST00000468937 BORCS7Q96B45 105 aa2.51□□□□□ -2.01
SYNE1-218ENST00000468937 HIST1H2BNQ99877 126 aa2.51□□□□□ -2.01
SYNE1-218ENST00000468937 HIST1H2BMQ99879 126 aa2.51□□□□□ -2.01
SYNE1-218ENST00000468937 TMEM208Q9BTX3 173 aa2.51□□□□□ -2.01
SYNE1-218ENST00000468937 TP53TG1Q9Y2A0 90 aa2.51□□□□□ -2.01
SYNE1-218ENST00000468937 PHLDA3Q9Y5J5 127 aa2.51□□□□□ -2.01
SYNE1-218ENST00000468937 TRAPPC1Q9Y5R8 145 aa2.51□□□□□ -2.01
SYNE1-218ENST00000468937 SMIM9A6NGZ8 99 aa2.5□□□□□ -2.01
SYNE1-218ENST00000468937 A8MWV9 139 aa2.5□□□□□ -2.01
SYNE1-218ENST00000468937 C1orf196B1AJZ1 125 aa2.5□□□□□ -2.01
SYNE1-218ENST00000468937 M0R2P5 195 aa2.5□□□□□ -2.01
SYNE1-218ENST00000468937 APCSP02743 223 aa2.5□□□□□ -2.01
SYNE1-218ENST00000468937 S100A8P05109 93 aa2.5□□□□□ -2.01
SYNE1-218ENST00000468937 CRYGDP07320 174 aa2.5□□□□□ -2.01
SYNE1-218ENST00000468937 TRGC1P0CF51 173 aa2.5□□□□□ -2.01
SYNE1-218ENST00000468937 RAB4AP20338 218 aa2.5□□□□□ -2.01
SYNE1-218ENST00000468937 RAB4BP61018 213 aa2.5□□□□□ -2.01
SYNE1-218ENST00000468937 SYCNQ0VAF6 134 aa2.5□□□□□ -2.01
SYNE1-218ENST00000468937 LGALS9BQ3B8N2 356 aa2.5□□□□□ -2.01
SYNE1-218ENST00000468937 Q6ZTI0 123 aa2.5□□□□□ -2.01
SYNE1-218ENST00000468937 LINC00173Q6ZV60 143 aa2.5□□□□□ -2.01
SYNE1-218ENST00000468937 OR11H2Q8NH07 326 aa2.5□□□□□ -2.01
SYNE1-218ENST00000468937 C18orf32Q8TCD1 76 aa2.5□□□□□ -2.01
SYNE1-218ENST00000468937 C18orf15Q96N68 181 aa2.5□□□□□ -2.01
SYNE1-218ENST00000468937 AP1S3Q96PC3 154 aa2.5□□□□□ -2.01
SYNE1-218ENST00000468937 SAMD10Q9BYL1 202 aa2.5□□□□□ -2.01
SYNE1-218ENST00000468937 DPH3P1Q9H4G8 78 aa2.5□□□□□ -2.01
SYNE1-218ENST00000468937 MRPL16Q9NX20 251 aaKnown RBP2.5□□□□□ -2.01
SYNE1-218ENST00000468937 TIMM8BQ9Y5J9 83 aaPredicted RBP2.5□□□□□ -2.01
SYNE1-218ENST00000468937 D6R8Y8 96 aa2.49□□□□□ -2.01
SYNE1-218ENST00000468937 SMKR1H3BMG3 65 aa2.49□□□□□ -2.01
SYNE1-218ENST00000468937 NPYP01303 97 aa2.49□□□□□ -2.01
SYNE1-218ENST00000468937 PPBPP02775 128 aa2.49□□□□□ -2.01
SYNE1-218ENST00000468937 MIFP14174 115 aa2.49□□□□□ -2.01
SYNE1-218ENST00000468937 SRIP30626 198 aa2.49□□□□□ -2.01
SYNE1-218ENST00000468937 RAB5BP61020 215 aa2.49□□□□□ -2.01
SYNE1-218ENST00000468937 Q0VG73 95 aa2.49□□□□□ -2.01
SYNE1-218ENST00000468937 OR10J3Q5JRS4 329 aa2.49□□□□□ -2.01
SYNE1-218ENST00000468937 CFAP126Q5VTH2 177 aa2.49□□□□□ -2.01
SYNE1-218ENST00000468937 SMIM15Q7Z3B0 74 aa2.49□□□□□ -2.01
SYNE1-218ENST00000468937 KRTAP13-1Q8IUC0 172 aa2.49□□□□□ -2.01
SYNE1-218ENST00000468937 MRAP2Q96G30 205 aa2.49□□□□□ -2.01
SYNE1-218ENST00000468937 RETNQ9HD89 108 aa2.49□□□□□ -2.01
SYNE1-218ENST00000468937 NOP10Q9NPE3 64 aaKnown RBP2.49□□□□□ -2.01
SYNE1-218ENST00000468937 DNAH11Q96DT5 4516 aa2.48□□□□□ -2.01
SYNE1-218ENST00000468937 TRGV1A0A0A0MS02 117 aa2.48□□□□□ -2.01
SYNE1-218ENST00000468937 TRAV26-2A0A0B4J265 109 aa2.48□□□□□ -2.01
SYNE1-218ENST00000468937 TRAV4A0A0B4J268 109 aa2.48□□□□□ -2.01
SYNE1-218ENST00000468937 TRBV6-5A0A0K0K1A5 114 aa2.48□□□□□ -2.01
SYNE1-218ENST00000468937 TMEM223A0PJW6 202 aa2.48□□□□□ -2.01
SYNE1-218ENST00000468937 LINC01546A6NGU7 62 aa2.48□□□□□ -2.01
SYNE1-218ENST00000468937 LYRM9A8MSI8 78 aa2.48□□□□□ -2.01
SYNE1-218ENST00000468937 M0QY20 66 aa2.48□□□□□ -2.01
SYNE1-218ENST00000468937 DEFB4AO15263 64 aa2.48□□□□□ -2.01
SYNE1-218ENST00000468937 NUPR1O60356 82 aa2.48□□□□□ -2.01
SYNE1-218ENST00000468937 NCR2O95944 276 aa2.48□□□□□ -2.01
SYNE1-218ENST00000468937 IGHV3-53P01767 116 aa2.48□□□□□ -2.01
SYNE1-218ENST00000468937 MGPP08493 103 aa2.48□□□□□ -2.01
SYNE1-218ENST00000468937 ESDP10768 282 aa2.48□□□□□ -2.01
SYNE1-218ENST00000468937 NDUFA6P56556 154 aa2.48□□□□□ -2.01
SYNE1-218ENST00000468937 TCTAP57738 103 aa2.48□□□□□ -2.01
SYNE1-218ENST00000468937 IQCJQ1A5X6 159 aa2.48□□□□□ -2.01
SYNE1-218ENST00000468937 FAM74A4Q5TZK3 123 aa2.48□□□□□ -2.01
SYNE1-218ENST00000468937 FAM222AQ5U5X8 452 aa2.48□□□□□ -2.01
SYNE1-218ENST00000468937 ORMDL3Q8N138 153 aa2.48□□□□□ -2.01
SYNE1-218ENST00000468937 PRELID3AQ96N28 172 aa2.48□□□□□ -2.01
SYNE1-218ENST00000468937 C11orf68Q9H3H3 251 aaKnown RBP2.48□□□□□ -2.01
SYNE1-218ENST00000468937 LAMTOR2Q9Y2Q5 125 aa2.48□□□□□ -2.01
SYNE1-218ENST00000468937 KLK5Q9Y337 293 aaPredicted RBP2.48□□□□□ -2.01
SYNE1-218ENST00000468937 KIAA1109Q2LD37 5005 aa2.48□□□□□ -2.01
SYNE1-218ENST00000468937 TRAV26-1A0A087WT03 109 aa2.47□□□□□ -2.01
SYNE1-218ENST00000468937 IGHV3-73A0A0B4J1V6 119 aa2.47□□□□□ -2.01
SYNE1-218ENST00000468937 TRBV6-4A0A1B0GX49 114 aa2.47□□□□□ -2.01
SYNE1-218ENST00000468937 LY6G6CO95867 125 aa2.47□□□□□ -2.01
SYNE1-218ENST00000468937 SMIM17P0DL12 118 aa2.47□□□□□ -2.01
SYNE1-218ENST00000468937 P0DMU3 169 aa2.47□□□□□ -2.01
SYNE1-218ENST00000468937 FAM231AP0DMU4 169 aa2.47□□□□□ -2.01
SYNE1-218ENST00000468937 FAM231CP0DMU5 169 aa2.47□□□□□ -2.01
SYNE1-218ENST00000468937 CKS2P33552 79 aa2.47□□□□□ -2.01
SYNE1-218ENST00000468937 IFI27P40305 119 aaPredicted RBP2.47□□□□□ -2.01
SYNE1-218ENST00000468937 POLR2KP53803 58 aaKnown RBP2.47□□□□□ -2.01
SYNE1-218ENST00000468937 EMP1P54849 157 aa2.47□□□□□ -2.01
SYNE1-218ENST00000468937 ZNF56Q15929 161 aa2.47□□□□□ -2.01
SYNE1-218ENST00000468937 LGALS9CQ6DKI2 356 aa2.47□□□□□ -2.01
SYNE1-218ENST00000468937 HIST3H2BBQ8N257 126 aa2.47□□□□□ -2.01
SYNE1-218ENST00000468937 SLC25A29Q8N8R3 303 aa2.47□□□□□ -2.01
SYNE1-218ENST00000468937 OR4C5Q8NGB2 326 aa2.47□□□□□ -2.01
SYNE1-218ENST00000468937 RPL39LQ96EH5 51 aaKnown RBP2.47□□□□□ -2.01
SYNE1-218ENST00000468937 TMEM70Q9BUB7 260 aa2.47□□□□□ -2.01
SYNE1-218ENST00000468937 SMIM2Q9BVW6 85 aa2.47□□□□□ -2.01
SYNE1-218ENST00000468937 NIT2Q9NQR4 276 aa2.47□□□□□ -2.01
SYNE1-218ENST00000468937 CHTOPQ9Y3Y2 248 aaKnown RBP2.47□□□□□ -2.01
SYNE1-218ENST00000468937 VPS13BQ7Z7G8 4022 aa2.46□□□□□ -2.01
SYNE1-218ENST00000468937 IGLV1-50A0A075B6I6 118 aa2.46□□□□□ -2.02
SYNE1-218ENST00000468937 TRGV2A0A075B6R0 118 aa2.46□□□□□ -2.02
SYNE1-218ENST00000468937 TRBV10-1A0A0K0K1A3 114 aa2.46□□□□□ -2.02
Retrieved 100 of 20,778 RNA–protein pairs in 52.4 ms