RNA–Protein interactions for RNA: ENST00000466591.1

COL7A1-206, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 778 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-206ENST00000466591 OR10D4PQ8NGN7 298 aa10.94□□□□□ -0.66
COL7A1-206ENST00000466591 TGIF2-C20orf24A0A0A6YYL0 155 aa10.93□□□□□ -0.66
COL7A1-206ENST00000466591 NPYP01303 97 aa10.93□□□□□ -0.66
COL7A1-206ENST00000466591 MT-ND6P03923 174 aa10.93□□□□□ -0.66
COL7A1-206ENST00000466591 OPRPNQ99935 248 aaPredicted RBP10.93□□□□□ -0.66
COL7A1-206ENST00000466591 NDUFA1O15239 70 aa10.92□□□□□ -0.66
COL7A1-206ENST00000466591 A0A0J9YXV3 536 aa10.91□□□□□ -0.66
COL7A1-206ENST00000466591 C9orf116Q5BN46 136 aaPredicted RBP10.91□□□□□ -0.66
COL7A1-206ENST00000466591 TMEM136Q6ZRR5 245 aa10.91□□□□□ -0.66
COL7A1-206ENST00000466591 ATP5L2Q7Z4Y8 100 aa10.91□□□□□ -0.66
COL7A1-206ENST00000466591 LINC01600Q96MT4 127 aa10.91□□□□□ -0.66
COL7A1-206ENST00000466591 PRELID3AQ96N28 172 aa10.91□□□□□ -0.66
COL7A1-206ENST00000466591 IMMP2LQ96T52 175 aa10.91□□□□□ -0.66
COL7A1-206ENST00000466591 HMCN2Q8NDA2 5059 aa10.91□□□□□ -0.66
COL7A1-206ENST00000466591 LOC389332A0A1B0GUA5 103 aa10.89□□□□□ -0.67
COL7A1-206ENST00000466591 F8WDY8 70 aa10.89□□□□□ -0.67
COL7A1-206ENST00000466591 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP10.89□□□□□ -0.67
COL7A1-206ENST00000466591 MRPS36P82909 103 aaKnown RBP10.89□□□□□ -0.67
COL7A1-206ENST00000466591 MAP1LC3AQ9H492 121 aa10.89□□□□□ -0.67
COL7A1-206ENST00000466591 A0A1B0GXF2 115 aa10.88□□□□□ -0.67
COL7A1-206ENST00000466591 A0A1W2PNN7 141 aa10.88□□□□□ -0.67
COL7A1-206ENST00000466591 RAB14P61106 215 aa10.88□□□□□ -0.67
COL7A1-206ENST00000466591 RNF151Q2KHN1 245 aa10.88□□□□□ -0.67
COL7A1-206ENST00000466591 Q6ZN92 141 aa10.88□□□□□ -0.67
COL7A1-206ENST00000466591 C2orf88Q9BSF0 95 aa10.88□□□□□ -0.67
COL7A1-206ENST00000466591 MRPL35Q9NZE8 188 aaKnown RBP10.88□□□□□ -0.67
COL7A1-206ENST00000466591 C1orf137Q5JT78 98 aa10.87□□□□□ -0.67
COL7A1-206ENST00000466591 TEX43Q6ZNM6 134 aa10.86□□□□□ -0.67
COL7A1-206ENST00000466591 IGHV3OR16-9A0A0B4J2B5 98 aa10.85□□□□□ -0.67
COL7A1-206ENST00000466591 MT-ND4LP03901 98 aa10.85□□□□□ -0.67
COL7A1-206ENST00000466591 PNRC1Q12796 327 aaPredicted RBP10.85□□□□□ -0.67
COL7A1-206ENST00000466591 GAGE2EQ4V326 116 aa10.85□□□□□ -0.67
COL7A1-206ENST00000466591 PHF5AQ7RTV0 110 aaKnown RBP10.85□□□□□ -0.67
COL7A1-206ENST00000466591 TMEM141Q96I45 108 aa10.85□□□□□ -0.67
COL7A1-206ENST00000466591 GAGE2DQ9UEU5 116 aa10.85□□□□□ -0.67
COL7A1-206ENST00000466591 PSORS1C2Q9UIG4 136 aa10.85□□□□□ -0.67
COL7A1-206ENST00000466591 ANAPC16Q96DE5 110 aa10.84□□□□□ -0.67
COL7A1-206ENST00000466591 PACRGQ96M98 296 aaPredicted RBP10.84□□□□□ -0.67
COL7A1-206ENST00000466591 CYSLTR1Q9Y271 337 aa10.84□□□□□ -0.67
COL7A1-206ENST00000466591 LAMTOR2Q9Y2Q5 125 aa10.84□□□□□ -0.67
COL7A1-206ENST00000466591 A0A087WZ39 114 aa10.83□□□□□ -0.68
COL7A1-206ENST00000466591 PRSS2P07478 247 aa10.83□□□□□ -0.68
COL7A1-206ENST00000466591 FAM19A5Q7Z5A7 132 aaPredicted RBP10.83□□□□□ -0.68
COL7A1-206ENST00000466591 IGLV4-3A0A075B6K6 122 aa10.82□□□□□ -0.68
COL7A1-206ENST00000466591 UNQ6190/PRO20217Q6UXQ8 127 aa10.82□□□□□ -0.68
COL7A1-206ENST00000466591 PYGO1Q9Y3Y4 419 aa10.82□□□□□ -0.68
COL7A1-206ENST00000466591 UBE2BP63146 152 aa10.81□□□□□ -0.68
COL7A1-206ENST00000466591 SRSF9Q13242 221 aaKnown RBP eCLIP10.81□□□□□ -0.68
COL7A1-206ENST00000466591 VCX2Q9H322 139 aa10.81□□□□□ -0.68
COL7A1-206ENST00000466591 ORMDL2Q53FV1 153 aa10.8□□□□□ -0.68
COL7A1-206ENST00000466591 C10orf25Q5T742 122 aa10.8□□□□□ -0.68
COL7A1-206ENST00000466591 CTDSP1Q9GZU7 261 aa10.8□□□□□ -0.68
COL7A1-206ENST00000466591 TOMM7Q9P0U1 55 aa10.8□□□□□ -0.68
COL7A1-206ENST00000466591 C6orf48Q9UBA6 75 aa10.8□□□□□ -0.68
COL7A1-206ENST00000466591 CKS1BP61024 79 aa10.79□□□□□ -0.68
COL7A1-206ENST00000466591 LINC00242Q5T6M2 205 aa10.79□□□□□ -0.68
COL7A1-206ENST00000466591 C2orf66Q6UXQ4 117 aa10.79□□□□□ -0.68
COL7A1-206ENST00000466591 Q8N8P6 123 aa10.79□□□□□ -0.68
COL7A1-206ENST00000466591 DIRC1Q969H9 104 aa10.79□□□□□ -0.68
COL7A1-206ENST00000466591 UBR4Q5T4S7 5183 aa10.78□□□□□ -0.68
COL7A1-206ENST00000466591 TRBV30A0A0K0K1B3 111 aa10.78□□□□□ -0.68
COL7A1-206ENST00000466591 FAM168BA1KXE4 195 aa10.78□□□□□ -0.68
COL7A1-206ENST00000466591 TLX1NBP0CAT3 122 aa10.78□□□□□ -0.68
COL7A1-206ENST00000466591 G0S2P27469 103 aa10.78□□□□□ -0.68
COL7A1-206ENST00000466591 FAM104AQ969W3 186 aa10.78□□□□□ -0.68
COL7A1-206ENST00000466591 M0QXV9 152 aa10.77□□□□□ -0.69
COL7A1-206ENST00000466591 ODF1Q14990 250 aa10.77□□□□□ -0.69
COL7A1-206ENST00000466591 PAPPA-AS1Q5QFB9 102 aa10.77□□□□□ -0.69
COL7A1-206ENST00000466591 UBE2D1P51668 147 aa10.76□□□□□ -0.69
COL7A1-206ENST00000466591 C2orf82Q6UX34 121 aa10.76□□□□□ -0.69
COL7A1-206ENST00000466591 NXT2Q9NPJ8 142 aaKnown RBP10.76□□□□□ -0.69
COL7A1-206ENST00000466591 NDUFC2-KCTD14E9PQ53 114 aa10.75□□□□□ -0.69
COL7A1-206ENST00000466591 K7EMI3 77 aa10.75□□□□□ -0.69
COL7A1-206ENST00000466591 IGLV7-43P04211 117 aa10.75□□□□□ -0.69
COL7A1-206ENST00000466591 KRTAP10-8P60410 259 aa10.75□□□□□ -0.69
COL7A1-206ENST00000466591 C6orf226Q5I0X4 101 aa10.75□□□□□ -0.69
COL7A1-206ENST00000466591 GEMIN7Q9H840 131 aaKnown RBP10.75□□□□□ -0.69
COL7A1-206ENST00000466591 PRSS47A8MTI9 375 aa10.74□□□□□ -0.69
COL7A1-206ENST00000466591 SEC11AP67812 179 aa10.74□□□□□ -0.69
COL7A1-206ENST00000466591 ZC2HC1BQ5TFG8 222 aa10.74□□□□□ -0.69
COL7A1-206ENST00000466591 LINC01561Q8N1V8 128 aa10.74□□□□□ -0.69
COL7A1-206ENST00000466591 ALKBH7Q9BT30 221 aaPredicted RBP10.73□□□□□ -0.69
COL7A1-206ENST00000466591 HERVK_113P63121 156 aa10.72□□□□□ -0.69
COL7A1-206ENST00000466591 KIAA0087Q14695 138 aa10.72□□□□□ -0.69
COL7A1-206ENST00000466591 NPSP0C0P6 89 aa10.71□□□□□ -0.69
COL7A1-206ENST00000466591 TNXBP22105 4242 aa10.71□□□□□ -0.69
COL7A1-206ENST00000466591 AMELXQ99217 191 aa10.7□□□□□ -0.7
COL7A1-206ENST00000466591 H0Y9J4 135 aa10.69□□□□□ -0.7
COL7A1-206ENST00000466591 S100PP25815 95 aa10.69□□□□□ -0.7
COL7A1-206ENST00000466591 LINC00469Q8N7U9 141 aa10.69□□□□□ -0.7
COL7A1-206ENST00000466591 LINC00173Q6ZV60 143 aa10.68□□□□□ -0.7
COL7A1-206ENST00000466591 Q8IZM0 81 aa10.68□□□□□ -0.7
COL7A1-206ENST00000466591 PRR26Q8N8Z3 221 aa10.68□□□□□ -0.7
COL7A1-206ENST00000466591 SCGB3A1Q96QR1 104 aa10.68□□□□□ -0.7
COL7A1-206ENST00000466591 IGIPA6NJ69 53 aa10.67□□□□□ -0.7
COL7A1-206ENST00000466591 KIAA1644Q3SXP7 199 aa10.67□□□□□ -0.7
COL7A1-206ENST00000466591 TIMM17AQ99595 171 aa10.67□□□□□ -0.7
COL7A1-206ENST00000466591 LBHQ53QV2 105 aaPredicted RBP10.66□□□□□ -0.7
COL7A1-206ENST00000466591 CLLU1Q5K131 121 aa10.66□□□□□ -0.7
COL7A1-206ENST00000466591 C9orf129Q5T035 196 aaKnown RBP10.66□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms