RNA–Protein interactions for RNA: ENST00000462613.1

SF3B1-206, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 3

Gene SF3B1, Length 141 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-206ENST00000462613 HIST1H2BKO60814 126 aa4.19□□□□□ -1.74
SF3B1-206ENST00000462613 HIST1H2BJP06899 126 aa4.19□□□□□ -1.74
SF3B1-206ENST00000462613 HIST1H2BOP23527 126 aa4.19□□□□□ -1.74
SF3B1-206ENST00000462613 HIST1H2BBP33778 126 aa4.19□□□□□ -1.74
SF3B1-206ENST00000462613 HIST1H2BDP58876 126 aa4.19□□□□□ -1.74
SF3B1-206ENST00000462613 KRTAP10-2P60368 255 aa4.19□□□□□ -1.74
SF3B1-206ENST00000462613 HIST1H2BCP62807 126 aa4.19□□□□□ -1.74
SF3B1-206ENST00000462613 SPAG11BQ08648 103 aa4.19□□□□□ -1.74
SF3B1-206ENST00000462613 WFDC2Q14508 124 aa4.19□□□□□ -1.74
SF3B1-206ENST00000462613 HIST2H2BEQ16778 126 aa4.19□□□□□ -1.74
SF3B1-206ENST00000462613 HIGD2BQ4VC39 106 aa4.19□□□□□ -1.74
SF3B1-206ENST00000462613 PDZD11Q5EBL8 140 aa4.19□□□□□ -1.74
SF3B1-206ENST00000462613 HIST2H2BFQ5QNW6 126 aaPredicted RBP4.19□□□□□ -1.74
SF3B1-206ENST00000462613 LINC00242Q5T6M2 205 aa4.19□□□□□ -1.74
SF3B1-206ENST00000462613 LINC00173Q6ZV60 143 aa4.19□□□□□ -1.74
SF3B1-206ENST00000462613 LINC01561Q8N1V8 128 aa4.19□□□□□ -1.74
SF3B1-206ENST00000462613 FAM19A2Q8N3H0 131 aa4.19□□□□□ -1.74
SF3B1-206ENST00000462613 LINC00469Q8N7U9 141 aa4.19□□□□□ -1.74
SF3B1-206ENST00000462613 ORAOV1Q8WV07 137 aa4.19□□□□□ -1.74
SF3B1-206ENST00000462613 HIST1H2BHQ93079 126 aa4.19□□□□□ -1.74
SF3B1-206ENST00000462613 URB1-AS1Q96HZ7 61 aa4.19□□□□□ -1.74
SF3B1-206ENST00000462613 HIST1H2BNQ99877 126 aa4.19□□□□□ -1.74
SF3B1-206ENST00000462613 HIST1H2BMQ99879 126 aa4.19□□□□□ -1.74
SF3B1-206ENST00000462613 CST9LQ9H4G1 147 aa4.19□□□□□ -1.74
SF3B1-206ENST00000462613 RYR2Q92736 4967 aa4.19□□□□□ -1.74
SF3B1-206ENST00000462613 IGHV3-64A0A075B6Q5 118 aa4.18□□□□□ -1.74
SF3B1-206ENST00000462613 A0A096LNJ9 63 aa4.18□□□□□ -1.74
SF3B1-206ENST00000462613 NDUFA1O15239 70 aa4.18□□□□□ -1.74
SF3B1-206ENST00000462613 S100A6P06703 90 aa4.18□□□□□ -1.74
SF3B1-206ENST00000462613 CNBPP62633 177 aaKnown RBP4.18□□□□□ -1.74
SF3B1-206ENST00000462613 ZC2HC1BQ5TFG8 222 aa4.18□□□□□ -1.74
SF3B1-206ENST00000462613 FAM19A3Q7Z5A8 133 aa4.18□□□□□ -1.74
SF3B1-206ENST00000462613 C15orf56Q8N910 161 aa4.18□□□□□ -1.74
SF3B1-206ENST00000462613 CARD19Q96LW7 228 aa4.18□□□□□ -1.74
SF3B1-206ENST00000462613 CAMK2N2Q96S95 79 aa4.18□□□□□ -1.74
SF3B1-206ENST00000462613 CHAC1Q9BUX1 264 aa4.18□□□□□ -1.74
SF3B1-206ENST00000462613 MAP1LC3CQ9BXW4 147 aa4.18□□□□□ -1.74
SF3B1-206ENST00000462613 IGLV4-69A0A075B6H9 119 aa4.17□□□□□ -1.74
SF3B1-206ENST00000462613 A0A0J9YXV3 536 aa4.17□□□□□ -1.74
SF3B1-206ENST00000462613 H0Y8G0 127 aa4.17□□□□□ -1.74
SF3B1-206ENST00000462613 FABP4P15090 132 aa4.17□□□□□ -1.74
SF3B1-206ENST00000462613 CKS1BP61024 79 aa4.17□□□□□ -1.74
SF3B1-206ENST00000462613 SYCNQ0VAF6 134 aa4.17□□□□□ -1.74
SF3B1-206ENST00000462613 C6orf226Q5I0X4 101 aa4.17□□□□□ -1.74
SF3B1-206ENST00000462613 TMEM170BQ5T4T1 132 aa4.17□□□□□ -1.74
SF3B1-206ENST00000462613 C9orf163Q8N9P6 203 aa4.17□□□□□ -1.74
SF3B1-206ENST00000462613 FAM104AQ969W3 186 aa4.17□□□□□ -1.74
SF3B1-206ENST00000462613 C2orf48Q96LS8 159 aa4.17□□□□□ -1.74
SF3B1-206ENST00000462613 TOMM7Q9P0U1 55 aa4.17□□□□□ -1.74
SF3B1-206ENST00000462613 CDKN2A-AS1Q9UH64 79 aa4.17□□□□□ -1.74
SF3B1-206ENST00000462613 CHTOPQ9Y3Y2 248 aaKnown RBP4.17□□□□□ -1.74
SF3B1-206ENST00000462613 TRAV12-1A0A0B4J245 112 aa4.16□□□□□ -1.74
SF3B1-206ENST00000462613 F8VRH5 84 aa4.16□□□□□ -1.74
SF3B1-206ENST00000462613 IGLC3P0DOY3 106 aa4.16□□□□□ -1.74
SF3B1-206ENST00000462613 S100A2P29034 98 aa4.16□□□□□ -1.74
SF3B1-206ENST00000462613 CXCL5P42830 114 aa4.16□□□□□ -1.74
SF3B1-206ENST00000462613 COX6A2Q02221 97 aa4.16□□□□□ -1.74
SF3B1-206ENST00000462613 DPH3Q96FX2 82 aa4.16□□□□□ -1.74
SF3B1-206ENST00000462613 IGLV5-45A0A087WSX0 123 aa4.15□□□□□ -1.75
SF3B1-206ENST00000462613 C20orf202A1L168 122 aa4.15□□□□□ -1.75
SF3B1-206ENST00000462613 CDK2AP2O75956 126 aa4.15□□□□□ -1.75
SF3B1-206ENST00000462613 PLNP26678 52 aa4.15□□□□□ -1.75
SF3B1-206ENST00000462613 FUSP35637 526 aaKnown RBP eCLIP4.15□□□□□ -1.75
SF3B1-206ENST00000462613 AKR1D1P51857 326 aa4.15□□□□□ -1.75
SF3B1-206ENST00000462613 HERVK_113P61574 105 aa4.15□□□□□ -1.75
SF3B1-206ENST00000462613 COA6Q5JTJ3 125 aaKnown RBP4.15□□□□□ -1.75
SF3B1-206ENST00000462613 SFTA2Q6UW10 78 aa4.15□□□□□ -1.75
SF3B1-206ENST00000462613 Q8IZM0 81 aa4.15□□□□□ -1.75
SF3B1-206ENST00000462613 LINC00526Q96FQ7 95 aa4.15□□□□□ -1.75
SF3B1-206ENST00000462613 LINC00474Q9P2X8 69 aa4.15□□□□□ -1.75
SF3B1-206ENST00000462613 RYR3Q15413 4870 aa4.15□□□□□ -1.75
SF3B1-206ENST00000462613 TRBV30A0A0K0K1B3 111 aa4.14□□□□□ -1.75
SF3B1-206ENST00000462613 LOC107984640A0A0U1RRK4 108 aa4.14□□□□□ -1.75
SF3B1-206ENST00000462613 SPINK8P0C7L1 97 aa4.14□□□□□ -1.75
SF3B1-206ENST00000462613 LINC00310P59036 64 aa4.14□□□□□ -1.75
SF3B1-206ENST00000462613 RNF151Q2KHN1 245 aa4.14□□□□□ -1.75
SF3B1-206ENST00000462613 MRPL35Q9NZE8 188 aaKnown RBP4.14□□□□□ -1.75
SF3B1-206ENST00000462613 C11orf86A6NJI1 115 aa4.13□□□□□ -1.75
SF3B1-206ENST00000462613 SMIM1B2RUZ4 78 aa4.13□□□□□ -1.75
SF3B1-206ENST00000462613 NUPR1O60356 82 aa4.13□□□□□ -1.75
SF3B1-206ENST00000462613 DPM2O94777 84 aa4.13□□□□□ -1.75
SF3B1-206ENST00000462613 IGKCP01834 107 aa4.13□□□□□ -1.75
SF3B1-206ENST00000462613 ZNF22P17026 224 aaPredicted RBP4.13□□□□□ -1.75
SF3B1-206ENST00000462613 KRTAP10-1P60331 282 aa4.13□□□□□ -1.75
SF3B1-206ENST00000462613 RPL18AQ02543 176 aaKnown RBP4.13□□□□□ -1.75
SF3B1-206ENST00000462613 LINC01620Q4KN68 170 aa4.13□□□□□ -1.75
SF3B1-206ENST00000462613 Q6ZRU5 148 aa4.13□□□□□ -1.75
SF3B1-206ENST00000462613 COX7B2Q8TF08 81 aa4.13□□□□□ -1.75
SF3B1-206ENST00000462613 IGKV2-24A0A0C4DH68 120 aa4.12□□□□□ -1.75
SF3B1-206ENST00000462613 SYS1-DBNDD2H3BUS1 97 aa4.12□□□□□ -1.75
SF3B1-206ENST00000462613 SLPIP03973 132 aa4.12□□□□□ -1.75
SF3B1-206ENST00000462613 KRTDAPP60985 99 aa4.12□□□□□ -1.75
SF3B1-206ENST00000462613 ODF1Q14990 250 aa4.12□□□□□ -1.75
SF3B1-206ENST00000462613 PET117Q6UWS5 81 aa4.12□□□□□ -1.75
SF3B1-206ENST00000462613 FRAS1Q86XX4 4008 aa4.12□□□□□ -1.75
SF3B1-206ENST00000462613 LINC00587B1AMM8 73 aa4.11□□□□□ -1.75
SF3B1-206ENST00000462613 GAGE2BQ13066 116 aa4.11□□□□□ -1.75
SF3B1-206ENST00000462613 KIAA0087Q14695 138 aa4.11□□□□□ -1.75
SF3B1-206ENST00000462613 MAJINQ3KP22 176 aa4.11□□□□□ -1.75
SF3B1-206ENST00000462613 C2orf82Q6UX34 121 aa4.11□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 6.9 ms