RNA–Protein interactions for RNA: ENST00000461819.5

CCDC28B-203, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 5

Gene CCDC28B, Length 780 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-203ENST00000461819 HSPG2P98160 4391 aa14.82□□□□□ -0.04
CCDC28B-203ENST00000461819 SCO1O75880 301 aa14.81□□□□□ -0.04
CCDC28B-203ENST00000461819 TRGC2P03986 189 aa14.81□□□□□ -0.04
CCDC28B-203ENST00000461819 UBE2D1P51668 147 aa14.81□□□□□ -0.04
CCDC28B-203ENST00000461819 C9orf163Q8N9P6 203 aa14.81□□□□□ -0.04
CCDC28B-203ENST00000461819 COLCA2A8K830 154 aa14.8□□□□□ -0.04
CCDC28B-203ENST00000461819 ZNF561-AS1K7EIQ3 104 aa14.8□□□□□ -0.04
CCDC28B-203ENST00000461819 APOMO95445 188 aa14.8□□□□□ -0.04
CCDC28B-203ENST00000461819 DNAH8Q96JB1 4490 aa14.8□□□□□ -0.04
CCDC28B-203ENST00000461819 IGHV3OR16-9A0A0B4J2B5 98 aa14.79□□□□□ -0.04
CCDC28B-203ENST00000461819 LINC00242Q5T6M2 205 aa14.79□□□□□ -0.04
CCDC28B-203ENST00000461819 HBDP02042 147 aa14.78□□□□□ -0.04
CCDC28B-203ENST00000461819 SLPIP03973 132 aa14.78□□□□□ -0.04
CCDC28B-203ENST00000461819 PMCHL1Q16048 86 aa14.78□□□□□ -0.04
CCDC28B-203ENST00000461819 LINC00526Q96FQ7 95 aa14.78□□□□□ -0.04
CCDC28B-203ENST00000461819 FAM30AQ9NZY2 134 aa14.78□□□□□ -0.04
CCDC28B-203ENST00000461819 XGP55808 180 aa14.77□□□□□ -0.05
CCDC28B-203ENST00000461819 HAMPP81172 84 aa14.77□□□□□ -0.05
CCDC28B-203ENST00000461819 IGHV3-64A0A075B6Q5 118 aa14.76□□□□□ -0.05
CCDC28B-203ENST00000461819 A0A096LNJ9 63 aa14.76□□□□□ -0.05
CCDC28B-203ENST00000461819 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP14.76□□□□□ -0.05
CCDC28B-203ENST00000461819 Q6ZSA8 131 aa14.76□□□□□ -0.05
CCDC28B-203ENST00000461819 COX6A2Q02221 97 aa14.75□□□□□ -0.05
CCDC28B-203ENST00000461819 BAGE3Q86Y29 109 aa14.75□□□□□ -0.05
CCDC28B-203ENST00000461819 CHCHD1Q96BP2 118 aaKnown RBP14.75□□□□□ -0.05
CCDC28B-203ENST00000461819 SEC11AP67812 179 aa14.74□□□□□ -0.05
CCDC28B-203ENST00000461819 OR10D4PQ8NGN7 298 aa14.74□□□□□ -0.05
CCDC28B-203ENST00000461819 ORAOV1Q8WV07 137 aa14.74□□□□□ -0.05
CCDC28B-203ENST00000461819 IGLV4-69A0A075B6H9 119 aa14.73□□□□□ -0.05
CCDC28B-203ENST00000461819 A0A087WZ39 114 aa14.73□□□□□ -0.05
CCDC28B-203ENST00000461819 SPAG11BQ08648 103 aa14.73□□□□□ -0.05
CCDC28B-203ENST00000461819 CARD19Q96LW7 228 aa14.73□□□□□ -0.05
CCDC28B-203ENST00000461819 HERVK_113P63121 156 aa14.72□□□□□ -0.05
CCDC28B-203ENST00000461819 FAM19A3Q7Z5A8 133 aa14.72□□□□□ -0.05
CCDC28B-203ENST00000461819 GEMIN7Q9H840 131 aaKnown RBP14.72□□□□□ -0.05
CCDC28B-203ENST00000461819 SYCNQ0VAF6 134 aa14.71□□□□□ -0.05
CCDC28B-203ENST00000461819 PMVKQ15126 192 aa14.71□□□□□ -0.05
CCDC28B-203ENST00000461819 A0A0J9YXV3 536 aa14.7□□□□□ -0.06
CCDC28B-203ENST00000461819 PDZD11Q5EBL8 140 aa14.7□□□□□ -0.06
CCDC28B-203ENST00000461819 SDIM1Q6ZPB5 146 aa14.7□□□□□ -0.06
CCDC28B-203ENST00000461819 CAMK2N2Q96S95 79 aa14.7□□□□□ -0.06
CCDC28B-203ENST00000461819 CST9LQ9H4G1 147 aa14.7□□□□□ -0.06
CCDC28B-203ENST00000461819 HSBP1O75506 76 aa14.69□□□□□ -0.06
CCDC28B-203ENST00000461819 ATP5LO75964 103 aa14.69□□□□□ -0.06
CCDC28B-203ENST00000461819 NDUFA6P56556 154 aa14.69□□□□□ -0.06
CCDC28B-203ENST00000461819 C2orf48Q96LS8 159 aa14.68□□□□□ -0.06
CCDC28B-203ENST00000461819 CHAC1Q9BUX1 264 aa14.68□□□□□ -0.06
CCDC28B-203ENST00000461819 SCXQ7RTU7 201 aa14.67□□□□□ -0.06
CCDC28B-203ENST00000461819 LINC01561Q8N1V8 128 aa14.67□□□□□ -0.06
CCDC28B-203ENST00000461819 TINCRA0A1B0GVN0 87 aa14.66□□□□□ -0.06
CCDC28B-203ENST00000461819 Q6ZRU5 148 aa14.66□□□□□ -0.06
CCDC28B-203ENST00000461819 Q8N1X5 172 aa14.66□□□□□ -0.06
CCDC28B-203ENST00000461819 LINC00469Q8N7U9 141 aa14.66□□□□□ -0.06
CCDC28B-203ENST00000461819 PACRGQ96M98 296 aaPredicted RBP14.66□□□□□ -0.06
CCDC28B-203ENST00000461819 CDKN2A-AS1Q9UH64 79 aa14.66□□□□□ -0.06
CCDC28B-203ENST00000461819 PKIGQ9Y2B9 76 aa14.66□□□□□ -0.06
CCDC28B-203ENST00000461819 S100A1P23297 94 aa14.65□□□□□ -0.06
CCDC28B-203ENST00000461819 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP14.65□□□□□ -0.06
CCDC28B-203ENST00000461819 ATP6V1G1O75348 118 aa14.64□□□□□ -0.07
CCDC28B-203ENST00000461819 SERF1AO75920 110 aa14.64□□□□□ -0.07
CCDC28B-203ENST00000461819 SMR3BP02814 79 aaPredicted RBP14.64□□□□□ -0.07
CCDC28B-203ENST00000461819 NDUFA1O15239 70 aa14.63□□□□□ -0.07
CCDC28B-203ENST00000461819 FAM19A2Q8N3H0 131 aa14.63□□□□□ -0.07
CCDC28B-203ENST00000461819 F8WDY8 70 aa14.62□□□□□ -0.07
CCDC28B-203ENST00000461819 PANO1I0J062 215 aa14.62□□□□□ -0.07
CCDC28B-203ENST00000461819 PRSS2P07478 247 aa14.62□□□□□ -0.07
CCDC28B-203ENST00000461819 CHTF8P0CG12 524 aa14.62□□□□□ -0.07
CCDC28B-203ENST00000461819 CIRBP-AS1Q8TBR5 109 aa14.62□□□□□ -0.07
CCDC28B-203ENST00000461819 DPH3Q96FX2 82 aa14.62□□□□□ -0.07
CCDC28B-203ENST00000461819 TOMM7Q9P0U1 55 aa14.62□□□□□ -0.07
CCDC28B-203ENST00000461819 IGKV2-24A0A0C4DH68 120 aa14.61□□□□□ -0.07
CCDC28B-203ENST00000461819 KRTAP17-1Q9BYP8 105 aa14.61□□□□□ -0.07
CCDC28B-203ENST00000461819 LINC00310P59036 64 aa14.6□□□□□ -0.07
CCDC28B-203ENST00000461819 IFI27L1Q96BM0 104 aa14.6□□□□□ -0.07
CCDC28B-203ENST00000461819 IGLV5-45A0A087WSX0 123 aa14.59□□□□□ -0.07
CCDC28B-203ENST00000461819 IGLC3P0DOY3 106 aa14.59□□□□□ -0.07
CCDC28B-203ENST00000461819 CIRBPQ14011 172 aaKnown RBP14.59□□□□□ -0.07
CCDC28B-203ENST00000461819 KIAA0087Q14695 138 aa14.59□□□□□ -0.07
CCDC28B-203ENST00000461819 SPACA4Q8TDM5 124 aa14.59□□□□□ -0.07
CCDC28B-203ENST00000461819 A0A096LNI7 61 aa14.58□□□□□ -0.08
CCDC28B-203ENST00000461819 LOC107984640A0A0U1RRK4 108 aa14.58□□□□□ -0.08
CCDC28B-203ENST00000461819 EPM2AB3EWF7 344 aa14.58□□□□□ -0.08
CCDC28B-203ENST00000461819 MRPL35Q9NZE8 188 aaKnown RBP14.58□□□□□ -0.08
CCDC28B-203ENST00000461819 H3BRM9 83 aa14.57□□□□□ -0.08
CCDC28B-203ENST00000461819 HIST1H2BKO60814 126 aa14.57□□□□□ -0.08
CCDC28B-203ENST00000461819 HIST1H2BJP06899 126 aa14.57□□□□□ -0.08
CCDC28B-203ENST00000461819 HIST1H2BOP23527 126 aa14.57□□□□□ -0.08
CCDC28B-203ENST00000461819 HIST1H2BBP33778 126 aa14.57□□□□□ -0.08
CCDC28B-203ENST00000461819 HIST1H2BDP58876 126 aa14.57□□□□□ -0.08
CCDC28B-203ENST00000461819 HIST1H2BCP62807 126 aa14.57□□□□□ -0.08
CCDC28B-203ENST00000461819 HIST2H2BEQ16778 126 aa14.57□□□□□ -0.08
CCDC28B-203ENST00000461819 RNF151Q2KHN1 245 aa14.57□□□□□ -0.08
CCDC28B-203ENST00000461819 MAJINQ3KP22 176 aa14.57□□□□□ -0.08
CCDC28B-203ENST00000461819 HIST2H2BFQ5QNW6 126 aaPredicted RBP14.57□□□□□ -0.08
CCDC28B-203ENST00000461819 UNQ6190/PRO20217Q6UXQ8 127 aa14.57□□□□□ -0.08
CCDC28B-203ENST00000461819 Q8IZM0 81 aa14.57□□□□□ -0.08
CCDC28B-203ENST00000461819 HIST1H2BHQ93079 126 aa14.57□□□□□ -0.08
CCDC28B-203ENST00000461819 HIST1H2BNQ99877 126 aa14.57□□□□□ -0.08
CCDC28B-203ENST00000461819 HIST1H2BMQ99879 126 aa14.57□□□□□ -0.08
CCDC28B-203ENST00000461819 SMIM1B2RUZ4 78 aa14.56□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 51.1 ms