RNA–Protein interactions for RNA: ENST00000460289.5

PTPN4-208, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 577 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-208ENST00000460289 MAJINQ3KP22 176 aa14.59□□□□□ -0.07
PTPN4-208ENST00000460289 PLAC8Q9NZF1 115 aa14.59□□□□□ -0.07
PTPN4-208ENST00000460289 S100PP25815 95 aa14.58□□□□□ -0.08
PTPN4-208ENST00000460289 ORMDL2Q53FV1 153 aa14.58□□□□□ -0.08
PTPN4-208ENST00000460289 C2orf48Q96LS8 159 aa14.57□□□□□ -0.08
PTPN4-208ENST00000460289 NXT2Q9NPJ8 142 aaKnown RBP14.57□□□□□ -0.08
PTPN4-208ENST00000460289 J3QL48 77 aa14.56□□□□□ -0.08
PTPN4-208ENST00000460289 CAMK2N2Q96S95 79 aa14.56□□□□□ -0.08
PTPN4-208ENST00000460289 CYSLTR1Q9Y271 337 aa14.56□□□□□ -0.08
PTPN4-208ENST00000460289 IGLV4-3A0A075B6K6 122 aa14.55□□□□□ -0.08
PTPN4-208ENST00000460289 A0A096LNI7 61 aa14.55□□□□□ -0.08
PTPN4-208ENST00000460289 IGHV3OR16-9A0A0B4J2B5 98 aa14.55□□□□□ -0.08
PTPN4-208ENST00000460289 KRTAP29-1A8MX34 341 aaPredicted RBP14.55□□□□□ -0.08
PTPN4-208ENST00000460289 C2orf66Q6UXQ4 117 aa14.55□□□□□ -0.08
PTPN4-208ENST00000460289 OR10D4PQ8NGN7 298 aa14.55□□□□□ -0.08
PTPN4-208ENST00000460289 TMEM141Q96I45 108 aa14.55□□□□□ -0.08
PTPN4-208ENST00000460289 C10orf91Q5T1B1 145 aa14.54□□□□□ -0.08
PTPN4-208ENST00000460289 STPG4Q8N801 248 aa14.54□□□□□ -0.08
PTPN4-208ENST00000460289 HERC1Q15751 4861 aa14.54□□□□□ -0.08
PTPN4-208ENST00000460289 G0S2P27469 103 aa14.53□□□□□ -0.08
PTPN4-208ENST00000460289 SPAG11BQ08648 103 aa14.53□□□□□ -0.08
PTPN4-208ENST00000460289 TEX43Q6ZNM6 134 aa14.53□□□□□ -0.08
PTPN4-208ENST00000460289 Q6ZRU5 148 aa14.53□□□□□ -0.08
PTPN4-208ENST00000460289 C7orf33Q8WU49 177 aa14.53□□□□□ -0.08
PTPN4-208ENST00000460289 TGIF2-C20orf24A0A0A6YYL0 155 aa14.52□□□□□ -0.09
PTPN4-208ENST00000460289 GNB1LQ9BYB4 327 aa14.52□□□□□ -0.09
PTPN4-208ENST00000460289 LOC107984640A0A0U1RRK4 108 aa14.51□□□□□ -0.09
PTPN4-208ENST00000460289 F8WDY8 70 aa14.51□□□□□ -0.09
PTPN4-208ENST00000460289 NPSP0C0P6 89 aa14.51□□□□□ -0.09
PTPN4-208ENST00000460289 KIAA1644Q3SXP7 199 aa14.51□□□□□ -0.09
PTPN4-208ENST00000460289 COX19Q49B96 90 aa14.51□□□□□ -0.09
PTPN4-208ENST00000460289 Q6ZN92 141 aa14.51□□□□□ -0.09
PTPN4-208ENST00000460289 ORAOV1Q8WV07 137 aa14.51□□□□□ -0.09
PTPN4-208ENST00000460289 C2orf88Q9BSF0 95 aa14.51□□□□□ -0.09
PTPN4-208ENST00000460289 CARHSP1Q9Y2V2 147 aaKnown RBP14.51□□□□□ -0.09
PTPN4-208ENST00000460289 RHEBQ15382 184 aa14.5□□□□□ -0.09
PTPN4-208ENST00000460289 LINC00242Q5T6M2 205 aa14.5□□□□□ -0.09
PTPN4-208ENST00000460289 VCX2Q9H322 139 aa14.5□□□□□ -0.09
PTPN4-208ENST00000460289 RNF151Q2KHN1 245 aa14.49□□□□□ -0.09
PTPN4-208ENST00000460289 RPS10P5Q9NQ39 176 aa14.49□□□□□ -0.09
PTPN4-208ENST00000460289 OXTP01178 125 aa14.48□□□□□ -0.09
PTPN4-208ENST00000460289 PTTG1IPP53801 180 aa14.48□□□□□ -0.09
PTPN4-208ENST00000460289 A0A087WZ39 114 aa14.47□□□□□ -0.09
PTPN4-208ENST00000460289 IGIPA6NJ69 53 aa14.47□□□□□ -0.09
PTPN4-208ENST00000460289 GAGE2BQ13066 116 aa14.47□□□□□ -0.09
PTPN4-208ENST00000460289 PAPPA-AS1Q5QFB9 102 aa14.47□□□□□ -0.09
PTPN4-208ENST00000460289 AMELXQ99217 191 aa14.47□□□□□ -0.09
PTPN4-208ENST00000460289 MT-ND6P03923 174 aa14.46□□□□□ -0.09
PTPN4-208ENST00000460289 UBE2D1P51668 147 aa14.46□□□□□ -0.09
PTPN4-208ENST00000460289 NDUFA1O15239 70 aa14.45□□□□□ -0.1
PTPN4-208ENST00000460289 HNRNPA3P51991 378 aaKnown RBP14.45□□□□□ -0.1
PTPN4-208ENST00000460289 MRPL35Q9NZE8 188 aaKnown RBP14.45□□□□□ -0.1
PTPN4-208ENST00000460289 TOMM6Q96B49 74 aa14.44□□□□□ -0.1
PTPN4-208ENST00000460289 ALKBH7Q9BT30 221 aaPredicted RBP14.44□□□□□ -0.1
PTPN4-208ENST00000460289 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP14.43□□□□□ -0.1
PTPN4-208ENST00000460289 LINC00173Q6ZV60 143 aa14.43□□□□□ -0.1
PTPN4-208ENST00000460289 LINC01561Q8N1V8 128 aa14.43□□□□□ -0.1
PTPN4-208ENST00000460289 TIMM17AQ99595 171 aa14.43□□□□□ -0.1
PTPN4-208ENST00000460289 ZC2HC1BQ5TFG8 222 aa14.42□□□□□ -0.1
PTPN4-208ENST00000460289 LINC01549A6NIU2 74 aa14.41□□□□□ -0.1
PTPN4-208ENST00000460289 RPL18AQ02543 176 aaKnown RBP14.41□□□□□ -0.1
PTPN4-208ENST00000460289 FABP9Q0Z7S8 132 aa14.41□□□□□ -0.1
PTPN4-208ENST00000460289 MRPL18Q9H0U6 180 aaKnown RBP14.41□□□□□ -0.1
PTPN4-208ENST00000460289 A0A0J9YXV3 536 aa14.4□□□□□ -0.1
PTPN4-208ENST00000460289 SEC11AP67812 179 aa14.4□□□□□ -0.1
PTPN4-208ENST00000460289 ERASQ7Z444 233 aa14.4□□□□□ -0.1
PTPN4-208ENST00000460289 FAM19A3Q7Z5A8 133 aa14.4□□□□□ -0.1
PTPN4-208ENST00000460289 LINC01546A6NGU7 62 aa14.39□□□□□ -0.11
PTPN4-208ENST00000460289 APOC3P02656 99 aa14.39□□□□□ -0.11
PTPN4-208ENST00000460289 KIAA0087Q14695 138 aa14.39□□□□□ -0.11
PTPN4-208ENST00000460289 NDUFA5Q16718 116 aa14.39□□□□□ -0.11
PTPN4-208ENST00000460289 UNQ6190/PRO20217Q6UXQ8 127 aa14.39□□□□□ -0.11
PTPN4-208ENST00000460289 SCGB3A1Q96QR1 104 aa14.39□□□□□ -0.11
PTPN4-208ENST00000460289 LRP1Q07954 4544 aaKnown RBP14.38□□□□□ -0.11
PTPN4-208ENST00000460289 HERVK_113P63121 156 aa14.37□□□□□ -0.11
PTPN4-208ENST00000460289 C10orf25Q5T742 122 aa14.37□□□□□ -0.11
PTPN4-208ENST00000460289 PKHD1L1Q86WI1 4243 aa14.37□□□□□ -0.11
PTPN4-208ENST00000460289 SNAPINO95295 136 aa14.36□□□□□ -0.11
PTPN4-208ENST00000460289 TLX1NBP0CAT3 122 aa14.36□□□□□ -0.11
PTPN4-208ENST00000460289 PRR3P79522 188 aaKnown RBP14.36□□□□□ -0.11
PTPN4-208ENST00000460289 FA2HQ7L5A8 372 aa14.36□□□□□ -0.11
PTPN4-208ENST00000460289 SVBPQ8N300 66 aa14.36□□□□□ -0.11
PTPN4-208ENST00000460289 C6orf48Q9UBA6 75 aa14.36□□□□□ -0.11
PTPN4-208ENST00000460289 A0A1W2PNN7 141 aa14.35□□□□□ -0.11
PTPN4-208ENST00000460289 C9orf116Q5BN46 136 aaPredicted RBP14.35□□□□□ -0.11
PTPN4-208ENST00000460289 GEMIN7Q9H840 131 aaKnown RBP14.35□□□□□ -0.11
PTPN4-208ENST00000460289 SMCO4Q9NRQ5 59 aa14.35□□□□□ -0.11
PTPN4-208ENST00000460289 FAT3Q8TDW7 4589 aa14.34□□□□□ -0.11
PTPN4-208ENST00000460289 TRBV30A0A0K0K1B3 111 aa14.34□□□□□ -0.11
PTPN4-208ENST00000460289 PRSS2P07478 247 aa14.33□□□□□ -0.12
PTPN4-208ENST00000460289 Q6ZRP5 223 aa14.33□□□□□ -0.12
PTPN4-208ENST00000460289 PACRGQ96M98 296 aaPredicted RBP14.33□□□□□ -0.12
PTPN4-208ENST00000460289 TRAPPC1Q9Y5R8 145 aa14.33□□□□□ -0.12
PTPN4-208ENST00000460289 C6orf226Q5I0X4 101 aa14.31□□□□□ -0.12
PTPN4-208ENST00000460289 C2orf82Q6UX34 121 aa14.31□□□□□ -0.12
PTPN4-208ENST00000460289 CDKN2A-AS1Q9UH64 79 aa14.31□□□□□ -0.12
PTPN4-208ENST00000460289 CKS1BP61024 79 aa14.3□□□□□ -0.12
PTPN4-208ENST00000460289 Q8IZM0 81 aa14.3□□□□□ -0.12
PTPN4-208ENST00000460289 TOMM7Q9P0U1 55 aa14.3□□□□□ -0.12
PTPN4-208ENST00000460289 GAGE2EQ4V326 116 aa14.28□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 70.9 ms