RNA–Protein interactions for RNA: ENST00000454398.1

HLA-DPA3-207, Transcript of major histocompatibility complex, class II, DP alpha 3 (pseudogene), humanhuman

BASIC

Gene HLA-DPA3, Length 229 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DPA3-207ENST00000454398 PHF5AQ7RTV0 110 aaKnown RBP3.66□□□□□ -1.82
HLA-DPA3-207ENST00000454398 IGLV4-69A0A075B6H9 119 aa3.65□□□□□ -1.83
HLA-DPA3-207ENST00000454398 IGHV1-58A0A0C4DH39 117 aa3.65□□□□□ -1.83
HLA-DPA3-207ENST00000454398 LINC00959A0A1B0GUT2 108 aa3.65□□□□□ -1.83
HLA-DPA3-207ENST00000454398 FAM231BA6NCW3 169 aa3.65□□□□□ -1.83
HLA-DPA3-207ENST00000454398 SMKR1H3BMG3 65 aa3.65□□□□□ -1.83
HLA-DPA3-207ENST00000454398 NCR2O95944 276 aa3.65□□□□□ -1.83
HLA-DPA3-207ENST00000454398 SCGB1D1O95968 90 aa3.65□□□□□ -1.83
HLA-DPA3-207ENST00000454398 RPS20P60866 119 aaKnown RBP3.65□□□□□ -1.83
HLA-DPA3-207ENST00000454398 SYCNQ0VAF6 134 aa3.65□□□□□ -1.83
HLA-DPA3-207ENST00000454398 PNRC1Q12796 327 aaPredicted RBP3.65□□□□□ -1.83
HLA-DPA3-207ENST00000454398 BATFQ16520 125 aa3.65□□□□□ -1.83
HLA-DPA3-207ENST00000454398 C9orf116Q5BN46 136 aaPredicted RBP3.65□□□□□ -1.83
HLA-DPA3-207ENST00000454398 C1orf137Q5JT78 98 aa3.65□□□□□ -1.83
HLA-DPA3-207ENST00000454398 Q6ZUT4 128 aa3.65□□□□□ -1.83
HLA-DPA3-207ENST00000454398 OR5A1Q8NGJ0 315 aa3.65□□□□□ -1.83
HLA-DPA3-207ENST00000454398 TMEM18Q96B42 140 aa3.65□□□□□ -1.83
HLA-DPA3-207ENST00000454398 OPRPNQ99935 248 aaPredicted RBP3.65□□□□□ -1.83
HLA-DPA3-207ENST00000454398 RPP21Q9H633 154 aaKnown RBP3.65□□□□□ -1.83
HLA-DPA3-207ENST00000454398 MANBALQ9NQG1 85 aa3.65□□□□□ -1.83
HLA-DPA3-207ENST00000454398 CBY1Q9Y3M2 126 aa3.65□□□□□ -1.83
HLA-DPA3-207ENST00000454398 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP3.64□□□□□ -1.83
HLA-DPA3-207ENST00000454398 ZNF561-AS1K7EIQ3 104 aa3.64□□□□□ -1.83
HLA-DPA3-207ENST00000454398 MEF2BQ02080 365 aaPredicted RBP3.64□□□□□ -1.83
HLA-DPA3-207ENST00000454398 FAM19A5Q7Z5A7 132 aaPredicted RBP3.64□□□□□ -1.83
HLA-DPA3-207ENST00000454398 ZNF664Q8N3J9 261 aa3.64□□□□□ -1.83
HLA-DPA3-207ENST00000454398 NUDT10Q8NFP7 164 aa3.64□□□□□ -1.83
HLA-DPA3-207ENST00000454398 NUDT11Q96G61 164 aa3.64□□□□□ -1.83
HLA-DPA3-207ENST00000454398 SMIM7Q9BQ49 75 aa3.64□□□□□ -1.83
HLA-DPA3-207ENST00000454398 SNHG12Q9BXW3 62 aa3.64□□□□□ -1.83
HLA-DPA3-207ENST00000454398 CNFNQ9BYD5 112 aa3.64□□□□□ -1.83
HLA-DPA3-207ENST00000454398 CTDSP1Q9GZU7 261 aa3.64□□□□□ -1.83
HLA-DPA3-207ENST00000454398 LINC00474Q9P2X8 69 aa3.64□□□□□ -1.83
HLA-DPA3-207ENST00000454398 NAT8Q9UHE5 227 aa3.64□□□□□ -1.83
HLA-DPA3-207ENST00000454398 TRAV13-1A0A0B4J241 112 aa3.63□□□□□ -1.83
HLA-DPA3-207ENST00000454398 LOC107984640A0A0U1RRK4 108 aa3.63□□□□□ -1.83
HLA-DPA3-207ENST00000454398 F2Z2F3 143 aa3.63□□□□□ -1.83
HLA-DPA3-207ENST00000454398 APOMO95445 188 aa3.63□□□□□ -1.83
HLA-DPA3-207ENST00000454398 MALP21145 153 aa3.63□□□□□ -1.83
HLA-DPA3-207ENST00000454398 SPAG11BQ08648 103 aa3.63□□□□□ -1.83
HLA-DPA3-207ENST00000454398 PRR4Q16378 134 aa3.63□□□□□ -1.83
HLA-DPA3-207ENST00000454398 ANKRD39Q53RE8 183 aa3.63□□□□□ -1.83
HLA-DPA3-207ENST00000454398 C5orf38Q86SI9 138 aa3.63□□□□□ -1.83
HLA-DPA3-207ENST00000454398 MRAP2Q96G30 205 aa3.63□□□□□ -1.83
HLA-DPA3-207ENST00000454398 TMEM101Q96IK0 257 aa3.63□□□□□ -1.83
HLA-DPA3-207ENST00000454398 BTF3L4Q96K17 158 aa3.63□□□□□ -1.83
HLA-DPA3-207ENST00000454398 CAMK2N2Q96S95 79 aa3.63□□□□□ -1.83
HLA-DPA3-207ENST00000454398 TRBV24-1A0A075B6N3 115 aa3.62□□□□□ -1.83
HLA-DPA3-207ENST00000454398 I3L3M4 83 aa3.62□□□□□ -1.83
HLA-DPA3-207ENST00000454398 COX7A2LO14548 114 aa3.62□□□□□ -1.83
HLA-DPA3-207ENST00000454398 DLEU1O43261 78 aa3.62□□□□□ -1.83
HLA-DPA3-207ENST00000454398 ESDP10768 282 aa3.62□□□□□ -1.83
HLA-DPA3-207ENST00000454398 PMCHP20382 165 aa3.62□□□□□ -1.83
HLA-DPA3-207ENST00000454398 RPL23P62829 140 aaKnown RBP3.62□□□□□ -1.83
HLA-DPA3-207ENST00000454398 CD164L2Q6UWJ8 174 aa3.62□□□□□ -1.83
HLA-DPA3-207ENST00000454398 NUP35Q8NFH5 326 aa3.62□□□□□ -1.83
HLA-DPA3-207ENST00000454398 A0A087WZ39 114 aa3.61□□□□□ -1.83
HLA-DPA3-207ENST00000454398 PDE6DO43924 150 aa3.61□□□□□ -1.83
HLA-DPA3-207ENST00000454398 IGLV7-43P04211 117 aa3.61□□□□□ -1.83
HLA-DPA3-207ENST00000454398 NPSP0C0P6 89 aa3.61□□□□□ -1.83
HLA-DPA3-207ENST00000454398 KRTAP1-4P0C5Y4 121 aa3.61□□□□□ -1.83
HLA-DPA3-207ENST00000454398 PCP4P48539 62 aa3.61□□□□□ -1.83
HLA-DPA3-207ENST00000454398 SS18Q15532 418 aa3.61□□□□□ -1.83
HLA-DPA3-207ENST00000454398 TMEM241Q24JQ0 296 aa3.61□□□□□ -1.83
HLA-DPA3-207ENST00000454398 C10orf25Q5T742 122 aa3.61□□□□□ -1.83
HLA-DPA3-207ENST00000454398 LCE2AQ5TA79 106 aaPredicted RBP3.61□□□□□ -1.83
HLA-DPA3-207ENST00000454398 AMN1Q8IY45 258 aa3.61□□□□□ -1.83
HLA-DPA3-207ENST00000454398 ANAPC16Q96DE5 110 aa3.61□□□□□ -1.83
HLA-DPA3-207ENST00000454398 CDC42SE2Q9NRR3 84 aa3.61□□□□□ -1.83
HLA-DPA3-207ENST00000454398 TRAPPC1Q9Y5R8 145 aa3.61□□□□□ -1.83
HLA-DPA3-207ENST00000454398 TRAV1-1A0A0B4J248 108 aa3.6□□□□□ -1.83
HLA-DPA3-207ENST00000454398 TRBV6-5A0A0K0K1A5 114 aa3.6□□□□□ -1.83
HLA-DPA3-207ENST00000454398 H0Y9J4 135 aa3.6□□□□□ -1.83
HLA-DPA3-207ENST00000454398 H7C423 109 aa3.6□□□□□ -1.83
HLA-DPA3-207ENST00000454398 LINC00614P0C842 121 aa3.6□□□□□ -1.83
HLA-DPA3-207ENST00000454398 GAGE2EQ4V326 116 aa3.6□□□□□ -1.83
HLA-DPA3-207ENST00000454398 COA6Q5JTJ3 125 aaKnown RBP3.6□□□□□ -1.83
HLA-DPA3-207ENST00000454398 SMIM15Q7Z3B0 74 aa3.6□□□□□ -1.83
HLA-DPA3-207ENST00000454398 KRTAP7-1Q8IUC3 87 aa3.6□□□□□ -1.83
HLA-DPA3-207ENST00000454398 OCC1Q8TAD7 63 aa3.6□□□□□ -1.83
HLA-DPA3-207ENST00000454398 ORAOV1Q8WV07 137 aa3.6□□□□□ -1.83
HLA-DPA3-207ENST00000454398 DIRC1Q969H9 104 aa3.6□□□□□ -1.83
HLA-DPA3-207ENST00000454398 SMIM12Q96EX1 92 aa3.6□□□□□ -1.83
HLA-DPA3-207ENST00000454398 VAMP8Q9BV40 100 aa3.6□□□□□ -1.83
HLA-DPA3-207ENST00000454398 ST20Q9HBF5 79 aa3.6□□□□□ -1.83
HLA-DPA3-207ENST00000454398 GAGE2DQ9UEU5 116 aa3.6□□□□□ -1.83
HLA-DPA3-207ENST00000454398 PKIGQ9Y2B9 76 aa3.6□□□□□ -1.83
HLA-DPA3-207ENST00000454398 UBE2D4Q9Y2X8 147 aa3.6□□□□□ -1.83
HLA-DPA3-207ENST00000454398 PAM16Q9Y3D7 125 aa3.6□□□□□ -1.83
HLA-DPA3-207ENST00000454398 A0A0U1RQV1 116 aa3.59□□□□□ -1.83
HLA-DPA3-207ENST00000454398 HIGD1CA8MV81 97 aa3.59□□□□□ -1.83
HLA-DPA3-207ENST00000454398 M0QXV9 152 aa3.59□□□□□ -1.83
HLA-DPA3-207ENST00000454398 TSPAN13O95857 204 aa3.59□□□□□ -1.83
HLA-DPA3-207ENST00000454398 FCER1GP30273 86 aa3.59□□□□□ -1.83
HLA-DPA3-207ENST00000454398 RPL39P62891 51 aaKnown RBP3.59□□□□□ -1.83
HLA-DPA3-207ENST00000454398 MRPL52Q86TS9 123 aaKnown RBP3.59□□□□□ -1.83
HLA-DPA3-207ENST00000454398 C6orf48Q9UBA6 75 aa3.59□□□□□ -1.83
HLA-DPA3-207ENST00000454398 TRBV27A0A0K0K1C4 114 aa3.58□□□□□ -1.84
HLA-DPA3-207ENST00000454398 TMEM250H0YL14 139 aa3.58□□□□□ -1.84
HLA-DPA3-207ENST00000454398 UBE2D1P51668 147 aa3.58□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms