RNA–Protein interactions for RNA: ENST00000448905.6

HMGB3-204, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 812 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-204ENST00000448905 F8W036 122 aa8.1□□□□□ -1.11
HMGB3-204ENST00000448905 S100A8P05109 93 aa8.1□□□□□ -1.11
HMGB3-204ENST00000448905 RPL32P62910 135 aaKnown RBP8.1□□□□□ -1.11
HMGB3-204ENST00000448905 HBBP68871 147 aa8.1□□□□□ -1.11
HMGB3-204ENST00000448905 AKAP14Q86UN6 197 aa8.1□□□□□ -1.11
HMGB3-204ENST00000448905 PRR26Q8N8Z3 221 aa8.1□□□□□ -1.11
HMGB3-204ENST00000448905 IGHV3OR16-9A0A0B4J2B5 98 aa8.09□□□□□ -1.11
HMGB3-204ENST00000448905 H0Y9J4 135 aa8.09□□□□□ -1.11
HMGB3-204ENST00000448905 SRP19P09132 144 aaKnown RBP8.09□□□□□ -1.11
HMGB3-204ENST00000448905 TLX1NBP0CAT3 122 aa8.09□□□□□ -1.11
HMGB3-204ENST00000448905 RAB5AP20339 215 aa8.09□□□□□ -1.11
HMGB3-204ENST00000448905 MRPS36P82909 103 aaKnown RBP8.09□□□□□ -1.11
HMGB3-204ENST00000448905 IGLV1-50A0A075B6I6 118 aa8.08□□□□□ -1.12
HMGB3-204ENST00000448905 TGIF2-C20orf24A0A0A6YYL0 155 aa8.08□□□□□ -1.12
HMGB3-204ENST00000448905 IFITM10A6NMD0 228 aa8.08□□□□□ -1.12
HMGB3-204ENST00000448905 TNFRSF6BO95407 300 aa8.08□□□□□ -1.12
HMGB3-204ENST00000448905 UBE2BP63146 152 aa8.08□□□□□ -1.12
HMGB3-204ENST00000448905 GAGE2EQ4V326 116 aa8.08□□□□□ -1.12
HMGB3-204ENST00000448905 UNQ6190/PRO20217Q6UXQ8 127 aa8.08□□□□□ -1.12
HMGB3-204ENST00000448905 GAGE2DQ9UEU5 116 aa8.08□□□□□ -1.12
HMGB3-204ENST00000448905 LPAP08519 4548 aa8.08□□□□□ -1.12
HMGB3-204ENST00000448905 SMIM27A0A1W2PRY6 76 aa8.07□□□□□ -1.12
HMGB3-204ENST00000448905 PPBPP02775 128 aa8.07□□□□□ -1.12
HMGB3-204ENST00000448905 UBE2D1P51668 147 aa8.07□□□□□ -1.12
HMGB3-204ENST00000448905 RPL39P62891 51 aaKnown RBP8.07□□□□□ -1.12
HMGB3-204ENST00000448905 FAM19A5Q7Z5A7 132 aaPredicted RBP8.07□□□□□ -1.12
HMGB3-204ENST00000448905 IFI27P40305 119 aaPredicted RBP8.06□□□□□ -1.12
HMGB3-204ENST00000448905 RPL13AP40429 203 aaKnown RBP8.06□□□□□ -1.12
HMGB3-204ENST00000448905 RPL23P62829 140 aaKnown RBP8.06□□□□□ -1.12
HMGB3-204ENST00000448905 ADIRFQ15847 76 aa8.06□□□□□ -1.12
HMGB3-204ENST00000448905 PACRGQ96M98 296 aaPredicted RBP8.06□□□□□ -1.12
HMGB3-204ENST00000448905 SMIM2Q9BVW6 85 aa8.06□□□□□ -1.12
HMGB3-204ENST00000448905 FAM168BA1KXE4 195 aa8.05□□□□□ -1.12
HMGB3-204ENST00000448905 C10orf25Q5T742 122 aa8.05□□□□□ -1.12
HMGB3-204ENST00000448905 SMDT1Q9H4I9 107 aa8.05□□□□□ -1.12
HMGB3-204ENST00000448905 NAT8Q9UHE5 227 aa8.05□□□□□ -1.12
HMGB3-204ENST00000448905 TRBV30A0A0K0K1B3 111 aa8.04□□□□□ -1.12
HMGB3-204ENST00000448905 D6R8Y8 96 aa8.04□□□□□ -1.12
HMGB3-204ENST00000448905 C6orf48Q9UBA6 75 aa8.04□□□□□ -1.12
HMGB3-204ENST00000448905 NDUFC2-KCTD14E9PQ53 114 aa8.03□□□□□ -1.12
HMGB3-204ENST00000448905 M0QXV9 152 aa8.03□□□□□ -1.12
HMGB3-204ENST00000448905 PEA15Q15121 130 aa8.03□□□□□ -1.12
HMGB3-204ENST00000448905 PYGO1Q9Y3Y4 419 aa8.03□□□□□ -1.12
HMGB3-204ENST00000448905 PRSS2P07478 247 aa8.02□□□□□ -1.13
HMGB3-204ENST00000448905 PRR4Q16378 134 aa8.02□□□□□ -1.13
HMGB3-204ENST00000448905 MRPL54Q6P161 138 aaKnown RBP8.02□□□□□ -1.13
HMGB3-204ENST00000448905 TMEM136Q6ZRR5 245 aa8.02□□□□□ -1.13
HMGB3-204ENST00000448905 ORMDL3Q8N138 153 aa8.02□□□□□ -1.13
HMGB3-204ENST00000448905 FAM104AQ969W3 186 aa8.02□□□□□ -1.13
HMGB3-204ENST00000448905 CARHSP1Q9Y2V2 147 aaKnown RBP8.02□□□□□ -1.13
HMGB3-204ENST00000448905 LBHQ53QV2 105 aaPredicted RBP8.01□□□□□ -1.13
HMGB3-204ENST00000448905 TEX43Q6ZNM6 134 aa8.01□□□□□ -1.13
HMGB3-204ENST00000448905 LINC01561Q8N1V8 128 aa8.01□□□□□ -1.13
HMGB3-204ENST00000448905 TMEM141Q96I45 108 aa8.01□□□□□ -1.13
HMGB3-204ENST00000448905 C2orf88Q9BSF0 95 aa8.01□□□□□ -1.13
HMGB3-204ENST00000448905 NPYP01303 97 aa8□□□□□ -1.13
HMGB3-204ENST00000448905 CKS1BP61024 79 aa8□□□□□ -1.13
HMGB3-204ENST00000448905 KIAA0087Q14695 138 aa8□□□□□ -1.13
HMGB3-204ENST00000448905 C6orf226Q5I0X4 101 aa8□□□□□ -1.13
HMGB3-204ENST00000448905 LINC00242Q5T6M2 205 aa8□□□□□ -1.13
HMGB3-204ENST00000448905 Q6ZN92 141 aa8□□□□□ -1.13
HMGB3-204ENST00000448905 KRTAP11-1Q8IUC1 163 aa8□□□□□ -1.13
HMGB3-204ENST00000448905 C2orf82Q6UX34 121 aa7.99□□□□□ -1.13
HMGB3-204ENST00000448905 PRELID3AQ96N28 172 aa7.99□□□□□ -1.13
HMGB3-204ENST00000448905 VCX2Q9H322 139 aa7.99□□□□□ -1.13
HMGB3-204ENST00000448905 hCG_2014768A0A024R1R8 64 aa7.98□□□□□ -1.13
HMGB3-204ENST00000448905 IGLV4-3A0A075B6K6 122 aa7.98□□□□□ -1.13
HMGB3-204ENST00000448905 A0A0U1RQV1 116 aa7.98□□□□□ -1.13
HMGB3-204ENST00000448905 ZNF861PO60384 105 aa7.98□□□□□ -1.13
HMGB3-204ENST00000448905 KRTAP1-4P0C5Y4 121 aa7.98□□□□□ -1.13
HMGB3-204ENST00000448905 LAMTOR2Q9Y2Q5 125 aa7.98□□□□□ -1.13
HMGB3-204ENST00000448905 A0A1B0GXF2 115 aa7.97□□□□□ -1.13
HMGB3-204ENST00000448905 NUPR1O60356 82 aa7.97□□□□□ -1.13
HMGB3-204ENST00000448905 ATP5L2Q7Z4Y8 100 aa7.97□□□□□ -1.13
HMGB3-204ENST00000448905 CYSLTR1Q9Y271 337 aa7.97□□□□□ -1.13
HMGB3-204ENST00000448905 LOC389332A0A1B0GUA5 103 aa7.96□□□□□ -1.14
HMGB3-204ENST00000448905 PRSS47A8MTI9 375 aa7.96□□□□□ -1.14
HMGB3-204ENST00000448905 G0S2P27469 103 aa7.96□□□□□ -1.14
HMGB3-204ENST00000448905 SEC11AP67812 179 aa7.96□□□□□ -1.14
HMGB3-204ENST00000448905 PAPPA-AS1Q5QFB9 102 aa7.96□□□□□ -1.14
HMGB3-204ENST00000448905 C9orf129Q5T035 196 aaKnown RBP7.96□□□□□ -1.14
HMGB3-204ENST00000448905 KRTAP7-1Q8IUC3 87 aa7.96□□□□□ -1.14
HMGB3-204ENST00000448905 ALKBH7Q9BT30 221 aaPredicted RBP7.96□□□□□ -1.14
HMGB3-204ENST00000448905 MAP1LC3AQ9H492 121 aa7.96□□□□□ -1.14
HMGB3-204ENST00000448905 TOMM7Q9P0U1 55 aa7.96□□□□□ -1.14
HMGB3-204ENST00000448905 C9JQL5 133 aa7.95□□□□□ -1.14
HMGB3-204ENST00000448905 NPSP0C0P6 89 aa7.95□□□□□ -1.14
HMGB3-204ENST00000448905 C22orf24Q9Y442 160 aa7.95□□□□□ -1.14
HMGB3-204ENST00000448905 RPL28P46779 137 aaKnown RBP7.94□□□□□ -1.14
HMGB3-204ENST00000448905 ORMDL2Q53FV1 153 aa7.94□□□□□ -1.14
HMGB3-204ENST00000448905 K7EMI3 77 aa7.93□□□□□ -1.14
HMGB3-204ENST00000448905 SRSF3P84103 164 aaKnown RBP7.93□□□□□ -1.14
HMGB3-204ENST00000448905 C2orf66Q6UXQ4 117 aa7.93□□□□□ -1.14
HMGB3-204ENST00000448905 Q8IZM0 81 aa7.93□□□□□ -1.14
HMGB3-204ENST00000448905 Q8N8P6 123 aa7.93□□□□□ -1.14
HMGB3-204ENST00000448905 CTDSP1Q9GZU7 261 aa7.93□□□□□ -1.14
HMGB3-204ENST00000448905 TSPAN13O95857 204 aa7.92□□□□□ -1.14
HMGB3-204ENST00000448905 HERVK_113P63121 156 aa7.92□□□□□ -1.14
HMGB3-204ENST00000448905 LINC00469Q8N7U9 141 aa7.92□□□□□ -1.14
HMGB3-204ENST00000448905 AMELXQ99217 191 aa7.92□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 897.6 ms