RNA–Protein interactions for RNA: ENST00000446625.6

LIMCH1-204, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 5

Gene LIMCH1, Length 789 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-204ENST00000446625 PMCHP20382 165 aa4.5□□□□□ -1.69
LIMCH1-204ENST00000446625 GAGE2EQ4V326 116 aa4.5□□□□□ -1.69
LIMCH1-204ENST00000446625 C10orf25Q5T742 122 aa4.5□□□□□ -1.69
LIMCH1-204ENST00000446625 SEC11CQ9BY50 192 aa4.5□□□□□ -1.69
LIMCH1-204ENST00000446625 KRTAP4-1Q9BYQ7 146 aa4.5□□□□□ -1.69
LIMCH1-204ENST00000446625 RNASE7Q9H1E1 156 aaKnown RBP4.5□□□□□ -1.69
LIMCH1-204ENST00000446625 MRPL35Q9NZE8 188 aaKnown RBP4.5□□□□□ -1.69
LIMCH1-204ENST00000446625 GAGE2DQ9UEU5 116 aa4.5□□□□□ -1.69
LIMCH1-204ENST00000446625 F8W036 122 aa4.49□□□□□ -1.69
LIMCH1-204ENST00000446625 PDE6DO43924 150 aa4.49□□□□□ -1.69
LIMCH1-204ENST00000446625 TSHBP01222 138 aa4.49□□□□□ -1.69
LIMCH1-204ENST00000446625 TLX1NBP0CAT3 122 aa4.49□□□□□ -1.69
LIMCH1-204ENST00000446625 MRPL52Q86TS9 123 aaKnown RBP4.49□□□□□ -1.69
LIMCH1-204ENST00000446625 MRAP2Q96G30 205 aa4.49□□□□□ -1.69
LIMCH1-204ENST00000446625 KRTAP4-8Q9BYQ9 185 aa4.49□□□□□ -1.69
LIMCH1-204ENST00000446625 TMEM242Q9NWH2 141 aa4.49□□□□□ -1.69
LIMCH1-204ENST00000446625 TRAV13-1A0A0B4J241 112 aa4.48□□□□□ -1.69
LIMCH1-204ENST00000446625 CTRLP40313 264 aa4.48□□□□□ -1.69
LIMCH1-204ENST00000446625 KRTAP13-2Q52LG2 175 aa4.48□□□□□ -1.69
LIMCH1-204ENST00000446625 RNASE13Q5GAN3 156 aaKnown RBP4.48□□□□□ -1.69
LIMCH1-204ENST00000446625 LINC00173Q6ZV60 143 aa4.48□□□□□ -1.69
LIMCH1-204ENST00000446625 NUDT10Q8NFP7 164 aa4.48□□□□□ -1.69
LIMCH1-204ENST00000446625 NUDT11Q96G61 164 aa4.48□□□□□ -1.69
LIMCH1-204ENST00000446625 ANAPC11Q9NYG5 84 aa4.48□□□□□ -1.69
LIMCH1-204ENST00000446625 C6orf48Q9UBA6 75 aa4.48□□□□□ -1.69
LIMCH1-204ENST00000446625 XKRY2A2RUG3 117 aa4.47□□□□□ -1.69
LIMCH1-204ENST00000446625 K7EN84 100 aa4.47□□□□□ -1.69
LIMCH1-204ENST00000446625 NDUFA1O15239 70 aa4.47□□□□□ -1.69
LIMCH1-204ENST00000446625 APOC3P02656 99 aa4.47□□□□□ -1.69
LIMCH1-204ENST00000446625 CEBPGP53567 150 aa4.47□□□□□ -1.69
LIMCH1-204ENST00000446625 FAM74A3Q4VXF1 159 aa4.47□□□□□ -1.69
LIMCH1-204ENST00000446625 UNQ6190/PRO20217Q6UXQ8 127 aa4.47□□□□□ -1.69
LIMCH1-204ENST00000446625 LINC00304Q8N9R0 145 aa4.47□□□□□ -1.69
LIMCH1-204ENST00000446625 OR10D4PQ8NGN7 298 aa4.47□□□□□ -1.69
LIMCH1-204ENST00000446625 ORAOV1Q8WV07 137 aa4.47□□□□□ -1.69
LIMCH1-204ENST00000446625 SMIM7Q9BQ49 75 aa4.47□□□□□ -1.69
LIMCH1-204ENST00000446625 CNFNQ9BYD5 112 aa4.47□□□□□ -1.69
LIMCH1-204ENST00000446625 PPDPFQ9H3Y8 114 aa4.47□□□□□ -1.69
LIMCH1-204ENST00000446625 TRBV6-5A0A0K0K1A5 114 aa4.46□□□□□ -1.7
LIMCH1-204ENST00000446625 C7orf77A4D0Y5 90 aa4.46□□□□□ -1.7
LIMCH1-204ENST00000446625 KRTAP9-7A8MTY7 169 aa4.46□□□□□ -1.7
LIMCH1-204ENST00000446625 ZNF727A8MUV8 499 aa4.46□□□□□ -1.7
LIMCH1-204ENST00000446625 F8WDY8 70 aa4.46□□□□□ -1.7
LIMCH1-204ENST00000446625 TMEM241Q24JQ0 296 aa4.46□□□□□ -1.7
LIMCH1-204ENST00000446625 ASB16-AS1Q495Z4 193 aa4.46□□□□□ -1.7
LIMCH1-204ENST00000446625 C9orf129Q5T035 196 aaKnown RBP4.46□□□□□ -1.7
LIMCH1-204ENST00000446625 SVBPQ8N300 66 aa4.46□□□□□ -1.7
LIMCH1-204ENST00000446625 CTDSP1Q9GZU7 261 aa4.46□□□□□ -1.7
LIMCH1-204ENST00000446625 NAT8Q9UHE5 227 aa4.46□□□□□ -1.7
LIMCH1-204ENST00000446625 SMKR1H3BMG3 65 aa4.45□□□□□ -1.7
LIMCH1-204ENST00000446625 NUPR1O60356 82 aa4.45□□□□□ -1.7
LIMCH1-204ENST00000446625 SNAPINO95295 136 aa4.45□□□□□ -1.7
LIMCH1-204ENST00000446625 RPL23P62829 140 aaKnown RBP4.45□□□□□ -1.7
LIMCH1-204ENST00000446625 OCC1Q8TAD7 63 aa4.45□□□□□ -1.7
LIMCH1-204ENST00000446625 ST20Q9HBF5 79 aa4.45□□□□□ -1.7
LIMCH1-204ENST00000446625 SCO1O75880 301 aa4.44□□□□□ -1.7
LIMCH1-204ENST00000446625 RPL28P46779 137 aaKnown RBP4.44□□□□□ -1.7
LIMCH1-204ENST00000446625 POLR2KP53803 58 aaKnown RBP4.44□□□□□ -1.7
LIMCH1-204ENST00000446625 PNRC1Q12796 327 aaPredicted RBP4.44□□□□□ -1.7
LIMCH1-204ENST00000446625 Q6ZUT4 128 aa4.44□□□□□ -1.7
LIMCH1-204ENST00000446625 SMIM15Q7Z3B0 74 aa4.44□□□□□ -1.7
LIMCH1-204ENST00000446625 LINC01551Q86U37 167 aa4.44□□□□□ -1.7
LIMCH1-204ENST00000446625 UBE2D4Q9Y2X8 147 aa4.44□□□□□ -1.7
LIMCH1-204ENST00000446625 CSDC2Q9Y534 153 aaKnown RBP4.44□□□□□ -1.7
LIMCH1-204ENST00000446625 IGHV3OR16-9A0A0B4J2B5 98 aa4.43□□□□□ -1.7
LIMCH1-204ENST00000446625 TRBV27A0A0K0K1C4 114 aa4.43□□□□□ -1.7
LIMCH1-204ENST00000446625 GATCO43716 136 aaKnown RBP4.43□□□□□ -1.7
LIMCH1-204ENST00000446625 RHEBQ15382 184 aa4.43□□□□□ -1.7
LIMCH1-204ENST00000446625 ADIRFQ15847 76 aa4.43□□□□□ -1.7
LIMCH1-204ENST00000446625 LINC00242Q5T6M2 205 aa4.43□□□□□ -1.7
LIMCH1-204ENST00000446625 LINC00337Q8N6G1 96 aa4.43□□□□□ -1.7
LIMCH1-204ENST00000446625 SMIM12Q96EX1 92 aa4.43□□□□□ -1.7
LIMCH1-204ENST00000446625 BIN3Q9NQY0 253 aa4.43□□□□□ -1.7
LIMCH1-204ENST00000446625 C22orf24Q9Y442 160 aa4.43□□□□□ -1.7
LIMCH1-204ENST00000446625 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.42□□□□□ -1.7
LIMCH1-204ENST00000446625 NDUFC2-KCTD14E9PQ53 114 aa4.42□□□□□ -1.7
LIMCH1-204ENST00000446625 BCE1O60756 84 aa4.42□□□□□ -1.7
LIMCH1-204ENST00000446625 KIAA0087Q14695 138 aa4.42□□□□□ -1.7
LIMCH1-204ENST00000446625 AMN1Q8IY45 258 aa4.42□□□□□ -1.7
LIMCH1-204ENST00000446625 RPS10P5Q9NQ39 176 aa4.42□□□□□ -1.7
LIMCH1-204ENST00000446625 TRBV30A0A0K0K1B3 111 aa4.41□□□□□ -1.7
LIMCH1-204ENST00000446625 FCER1GP30273 86 aa4.41□□□□□ -1.7
LIMCH1-204ENST00000446625 MT1HP80294 61 aa4.41□□□□□ -1.7
LIMCH1-204ENST00000446625 KRTAP13-3Q3SY46 172 aa4.41□□□□□ -1.7
LIMCH1-204ENST00000446625 FAM229BQ4G0N7 80 aa4.41□□□□□ -1.7
LIMCH1-204ENST00000446625 LBHQ53QV2 105 aaPredicted RBP4.41□□□□□ -1.7
LIMCH1-204ENST00000446625 C2orf82Q6UX34 121 aa4.41□□□□□ -1.7
LIMCH1-204ENST00000446625 FAM231DQ6ZW35 169 aa4.41□□□□□ -1.7
LIMCH1-204ENST00000446625 FAM104AQ969W3 186 aa4.41□□□□□ -1.7
LIMCH1-204ENST00000446625 ANAPC16Q96DE5 110 aa4.41□□□□□ -1.7
LIMCH1-204ENST00000446625 YPEL4Q96NS1 127 aa4.41□□□□□ -1.7
LIMCH1-204ENST00000446625 OSTCQ9NRP0 149 aa4.41□□□□□ -1.7
LIMCH1-204ENST00000446625 VCYO14598 125 aa4.4□□□□□ -1.71
LIMCH1-204ENST00000446625 PPP1R2P9O14990 202 aa4.4□□□□□ -1.71
LIMCH1-204ENST00000446625 MT-ND4LP03901 98 aa4.4□□□□□ -1.71
LIMCH1-204ENST00000446625 SEC61BP60468 96 aaKnown RBP4.4□□□□□ -1.71
LIMCH1-204ENST00000446625 SMAGPQ0VAQ4 97 aa4.4□□□□□ -1.71
LIMCH1-204ENST00000446625 CBLN2Q8IUK8 224 aa4.4□□□□□ -1.71
LIMCH1-204ENST00000446625 BORCS7Q96B45 105 aa4.4□□□□□ -1.71
LIMCH1-204ENST00000446625 SMCO4Q9NRQ5 59 aa4.4□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms