RNA–Protein interactions for RNA: ENST00000434274.2

LIMS1-209, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 3

Gene LIMS1, Length 779 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-209ENST00000434274 MYCBP2O75592 4640 aa9.42□□□□□ -0.9
LIMS1-209ENST00000434274 TGIF2-C20orf24A0A0A6YYL0 155 aa9.41□□□□□ -0.9
LIMS1-209ENST00000434274 RPL39P62891 51 aaKnown RBP9.41□□□□□ -0.9
LIMS1-209ENST00000434274 RNF151Q2KHN1 245 aa9.41□□□□□ -0.9
LIMS1-209ENST00000434274 CTDSP1Q9GZU7 261 aa9.41□□□□□ -0.9
LIMS1-209ENST00000434274 A0A096LNI7 61 aa9.4□□□□□ -0.9
LIMS1-209ENST00000434274 SPAG11BQ08648 103 aa9.4□□□□□ -0.9
LIMS1-209ENST00000434274 ORMDL2Q53FV1 153 aa9.4□□□□□ -0.9
LIMS1-209ENST00000434274 PAPPA-AS1Q5QFB9 102 aa9.4□□□□□ -0.9
LIMS1-209ENST00000434274 SERTAD4-AS1Q5TG53 156 aa9.4□□□□□ -0.9
LIMS1-209ENST00000434274 Q6ZN92 141 aa9.4□□□□□ -0.9
LIMS1-209ENST00000434274 C2orf88Q9BSF0 95 aa9.4□□□□□ -0.9
LIMS1-209ENST00000434274 NXT2Q9NPJ8 142 aaKnown RBP9.4□□□□□ -0.9
LIMS1-209ENST00000434274 RNASE13Q5GAN3 156 aaKnown RBP9.39□□□□□ -0.91
LIMS1-209ENST00000434274 Q8N8P6 123 aa9.39□□□□□ -0.91
LIMS1-209ENST00000434274 TMEM141Q96I45 108 aa9.39□□□□□ -0.91
LIMS1-209ENST00000434274 CYSLTR1Q9Y271 337 aa9.39□□□□□ -0.91
LIMS1-209ENST00000434274 IGHV3OR16-9A0A0B4J2B5 98 aa9.38□□□□□ -0.91
LIMS1-209ENST00000434274 LINC01549A6NIU2 74 aa9.38□□□□□ -0.91
LIMS1-209ENST00000434274 PTTG1IPP53801 180 aa9.38□□□□□ -0.91
LIMS1-209ENST00000434274 TEX43Q6ZNM6 134 aa9.38□□□□□ -0.91
LIMS1-209ENST00000434274 NDUFA1O15239 70 aa9.37□□□□□ -0.91
LIMS1-209ENST00000434274 S100PP25815 95 aa9.37□□□□□ -0.91
LIMS1-209ENST00000434274 C5orf38Q86SI9 138 aa9.37□□□□□ -0.91
LIMS1-209ENST00000434274 ORAOV1Q8WV07 137 aa9.37□□□□□ -0.91
LIMS1-209ENST00000434274 MRPL35Q9NZE8 188 aaKnown RBP9.37□□□□□ -0.91
LIMS1-209ENST00000434274 COX19Q49B96 90 aa9.36□□□□□ -0.91
LIMS1-209ENST00000434274 LINC01561Q8N1V8 128 aa9.36□□□□□ -0.91
LIMS1-209ENST00000434274 LINC00526Q96FQ7 95 aa9.36□□□□□ -0.91
LIMS1-209ENST00000434274 SEC11AP67812 179 aa9.35□□□□□ -0.91
LIMS1-209ENST00000434274 PRR3P79522 188 aaKnown RBP9.35□□□□□ -0.91
LIMS1-209ENST00000434274 SEC11CQ9BY50 192 aa9.35□□□□□ -0.91
LIMS1-209ENST00000434274 IGLV4-3A0A075B6K6 122 aa9.34□□□□□ -0.91
LIMS1-209ENST00000434274 A0A087WZ39 114 aa9.34□□□□□ -0.91
LIMS1-209ENST00000434274 TMEM218A2RU14 115 aa9.34□□□□□ -0.91
LIMS1-209ENST00000434274 C2orf66Q6UXQ4 117 aa9.34□□□□□ -0.91
LIMS1-209ENST00000434274 LOC389332A0A1B0GUA5 103 aa9.33□□□□□ -0.92
LIMS1-209ENST00000434274 RPL18AQ02543 176 aaKnown RBP9.33□□□□□ -0.92
LIMS1-209ENST00000434274 GAGE2BQ13066 116 aa9.33□□□□□ -0.92
LIMS1-209ENST00000434274 Q6ZRP5 223 aa9.33□□□□□ -0.92
LIMS1-209ENST00000434274 VCX2Q9H322 139 aa9.33□□□□□ -0.92
LIMS1-209ENST00000434274 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP9.32□□□□□ -0.92
LIMS1-209ENST00000434274 MT-ND6P03923 174 aa9.32□□□□□ -0.92
LIMS1-209ENST00000434274 TLX1NBP0CAT3 122 aa9.32□□□□□ -0.92
LIMS1-209ENST00000434274 HNRNPA3P51991 378 aaKnown RBP9.32□□□□□ -0.92
LIMS1-209ENST00000434274 FAM104AQ969W3 186 aa9.32□□□□□ -0.92
LIMS1-209ENST00000434274 TRBV30A0A0K0K1B3 111 aa9.31□□□□□ -0.92
LIMS1-209ENST00000434274 LINC00242Q5T6M2 205 aa9.31□□□□□ -0.92
LIMS1-209ENST00000434274 TIMM17AQ99595 171 aa9.31□□□□□ -0.92
LIMS1-209ENST00000434274 UBE2D1P51668 147 aa9.3□□□□□ -0.92
LIMS1-209ENST00000434274 RHEBQ15382 184 aa9.3□□□□□ -0.92
LIMS1-209ENST00000434274 REG3GQ6UW15 175 aa9.3□□□□□ -0.92
LIMS1-209ENST00000434274 SPINK6Q6UWN8 80 aa9.3□□□□□ -0.92
LIMS1-209ENST00000434274 AMELXQ99217 191 aa9.3□□□□□ -0.92
LIMS1-209ENST00000434274 OPRPNQ99935 248 aaPredicted RBP9.3□□□□□ -0.92
LIMS1-209ENST00000434274 GNB1LQ9BYB4 327 aa9.3□□□□□ -0.92
LIMS1-209ENST00000434274 ADCYAP1P18509 176 aa9.29□□□□□ -0.92
LIMS1-209ENST00000434274 HERVK_113P63121 156 aa9.29□□□□□ -0.92
LIMS1-209ENST00000434274 HERC1Q15751 4861 aa9.29□□□□□ -0.92
LIMS1-209ENST00000434274 PRSS2P07478 247 aa9.28□□□□□ -0.92
LIMS1-209ENST00000434274 FAM19A3Q7Z5A8 133 aa9.28□□□□□ -0.92
LIMS1-209ENST00000434274 PACRGQ96M98 296 aaPredicted RBP9.28□□□□□ -0.92
LIMS1-209ENST00000434274 IGIPA6NJ69 53 aa9.27□□□□□ -0.93
LIMS1-209ENST00000434274 C9orf116Q5BN46 136 aaPredicted RBP9.27□□□□□ -0.93
LIMS1-209ENST00000434274 COMMD7Q86VX2 200 aa9.27□□□□□ -0.93
LIMS1-209ENST00000434274 TOMM6Q96B49 74 aa9.27□□□□□ -0.93
LIMS1-209ENST00000434274 IFITM2Q01629 132 aa9.26□□□□□ -0.93
LIMS1-209ENST00000434274 ERASQ7Z444 233 aa9.26□□□□□ -0.93
LIMS1-209ENST00000434274 GEMIN7Q9H840 131 aaKnown RBP9.26□□□□□ -0.93
LIMS1-209ENST00000434274 CXCL5P42830 114 aa9.25□□□□□ -0.93
LIMS1-209ENST00000434274 Q8IZM0 81 aa9.25□□□□□ -0.93
LIMS1-209ENST00000434274 CARHSP1Q9Y2V2 147 aaKnown RBP9.25□□□□□ -0.93
LIMS1-209ENST00000434274 NDUFC2-KCTD14E9PQ53 114 aa9.24□□□□□ -0.93
LIMS1-209ENST00000434274 CKS1BP61024 79 aa9.24□□□□□ -0.93
LIMS1-209ENST00000434274 KIAA0087Q14695 138 aa9.24□□□□□ -0.93
LIMS1-209ENST00000434274 C10orf91Q5T1B1 145 aa9.24□□□□□ -0.93
LIMS1-209ENST00000434274 LINC00173Q6ZV60 143 aa9.24□□□□□ -0.93
LIMS1-209ENST00000434274 C6orf48Q9UBA6 75 aa9.24□□□□□ -0.93
LIMS1-209ENST00000434274 PLA2G2DQ9UNK4 145 aa9.24□□□□□ -0.93
LIMS1-209ENST00000434274 LINC01546A6NGU7 62 aa9.23□□□□□ -0.93
LIMS1-209ENST00000434274 ODF1Q14990 250 aa9.23□□□□□ -0.93
LIMS1-209ENST00000434274 NDUFA5Q16718 116 aa9.23□□□□□ -0.93
LIMS1-209ENST00000434274 UNQ6190/PRO20217Q6UXQ8 127 aa9.23□□□□□ -0.93
LIMS1-209ENST00000434274 LINC01600Q96MT4 127 aa9.23□□□□□ -0.93
LIMS1-209ENST00000434274 SCGB3A1Q96QR1 104 aa9.23□□□□□ -0.93
LIMS1-209ENST00000434274 SMCO4Q9NRQ5 59 aa9.23□□□□□ -0.93
LIMS1-209ENST00000434274 A0A0J9YXV3 536 aa9.22□□□□□ -0.93
LIMS1-209ENST00000434274 A0A1W2PNN7 141 aa9.22□□□□□ -0.93
LIMS1-209ENST00000434274 KIAA1644Q3SXP7 199 aa9.22□□□□□ -0.93
LIMS1-209ENST00000434274 C6orf226Q5I0X4 101 aa9.22□□□□□ -0.93
LIMS1-209ENST00000434274 FA2HQ7L5A8 372 aa9.22□□□□□ -0.93
LIMS1-209ENST00000434274 ALKBH7Q9BT30 221 aaPredicted RBP9.22□□□□□ -0.93
LIMS1-209ENST00000434274 MT1HL1P0DM35 61 aa9.21□□□□□ -0.94
LIMS1-209ENST00000434274 C10orf25Q5T742 122 aa9.21□□□□□ -0.94
LIMS1-209ENST00000434274 TINCRA0A1B0GVN0 87 aa9.2□□□□□ -0.94
LIMS1-209ENST00000434274 MRPL18Q9H0U6 180 aaKnown RBP9.2□□□□□ -0.94
LIMS1-209ENST00000434274 RPS10P5Q9NQ39 176 aa9.2□□□□□ -0.94
LIMS1-209ENST00000434274 F8VRH5 84 aa9.19□□□□□ -0.94
LIMS1-209ENST00000434274 FABP9Q0Z7S8 132 aa9.19□□□□□ -0.94
LIMS1-209ENST00000434274 SRSF9Q13242 221 aaKnown RBP eCLIP9.19□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 54.6 ms