RNA–Protein interactions for RNA: ENST00000430104.5

SHH-202, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 677 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-202ENST00000430104 SCGB3A1Q96QR1 104 aa12.02□□□□□ -0.49
SHH-202ENST00000430104 C2orf88Q9BSF0 95 aa12.02□□□□□ -0.49
SHH-202ENST00000430104 SDIM1Q6ZPB5 146 aa12.01□□□□□ -0.49
SHH-202ENST00000430104 SCXQ7RTU7 201 aa12.01□□□□□ -0.49
SHH-202ENST00000430104 C18orf32Q8TCD1 76 aa12.01□□□□□ -0.49
SHH-202ENST00000430104 LINC01546A6NGU7 62 aa12□□□□□ -0.49
SHH-202ENST00000430104 APOMO95445 188 aa12□□□□□ -0.49
SHH-202ENST00000430104 LINC00173Q6ZV60 143 aa12□□□□□ -0.49
SHH-202ENST00000430104 IGLV4-69A0A075B6H9 119 aa11.99□□□□□ -0.49
SHH-202ENST00000430104 IGHV3OR16-9A0A0B4J2B5 98 aa11.99□□□□□ -0.49
SHH-202ENST00000430104 EPM2AB3EWF7 344 aa11.99□□□□□ -0.49
SHH-202ENST00000430104 UBE2D1P51668 147 aa11.99□□□□□ -0.49
SHH-202ENST00000430104 COX6A2Q02221 97 aa11.99□□□□□ -0.49
SHH-202ENST00000430104 LINC00242Q5T6M2 205 aa11.99□□□□□ -0.49
SHH-202ENST00000430104 AMELXQ99217 191 aa11.99□□□□□ -0.49
SHH-202ENST00000430104 CHAC1Q9BUX1 264 aa11.99□□□□□ -0.49
SHH-202ENST00000430104 DNAH8Q96JB1 4490 aa11.98□□□□□ -0.49
SHH-202ENST00000430104 PAPPA-AS1Q5QFB9 102 aa11.98□□□□□ -0.49
SHH-202ENST00000430104 ERASQ7Z444 233 aa11.98□□□□□ -0.49
SHH-202ENST00000430104 TIMM17AQ99595 171 aa11.98□□□□□ -0.49
SHH-202ENST00000430104 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP11.98□□□□□ -0.49
SHH-202ENST00000430104 NPSP0C0P6 89 aa11.97□□□□□ -0.49
SHH-202ENST00000430104 LINC00614P0C842 121 aa11.97□□□□□ -0.49
SHH-202ENST00000430104 SYCNQ0VAF6 134 aa11.97□□□□□ -0.49
SHH-202ENST00000430104 Q5VSD8 79 aa11.97□□□□□ -0.49
SHH-202ENST00000430104 CIRBP-AS1Q8TBR5 109 aa11.97□□□□□ -0.49
SHH-202ENST00000430104 ORAOV1Q8WV07 137 aa11.97□□□□□ -0.49
SHH-202ENST00000430104 DPH3Q96FX2 82 aa11.97□□□□□ -0.49
SHH-202ENST00000430104 URB1-AS1Q96HZ7 61 aa11.97□□□□□ -0.49
SHH-202ENST00000430104 CARD19Q96LW7 228 aa11.97□□□□□ -0.49
SHH-202ENST00000430104 PANO1I0J062 215 aa11.96□□□□□ -0.49
SHH-202ENST00000430104 CHTF8P0CG12 524 aa11.96□□□□□ -0.49
SHH-202ENST00000430104 SPAG11BQ08648 103 aa11.96□□□□□ -0.49
SHH-202ENST00000430104 FAM229AH3BQW9 127 aa11.95□□□□□ -0.5
SHH-202ENST00000430104 PMCHL1Q16048 86 aa11.95□□□□□ -0.5
SHH-202ENST00000430104 CAMK2N2Q96S95 79 aa11.95□□□□□ -0.5
SHH-202ENST00000430104 LINC01549A6NIU2 74 aa11.94□□□□□ -0.5
SHH-202ENST00000430104 A0A087WZ39 114 aa11.93□□□□□ -0.5
SHH-202ENST00000430104 RAB5BP61020 215 aa11.93□□□□□ -0.5
SHH-202ENST00000430104 Q6ZRU5 148 aa11.93□□□□□ -0.5
SHH-202ENST00000430104 OR10D4PQ8NGN7 298 aa11.93□□□□□ -0.5
SHH-202ENST00000430104 IGKV2-24A0A0C4DH68 120 aa11.92□□□□□ -0.5
SHH-202ENST00000430104 TRGC2P03986 189 aa11.92□□□□□ -0.5
SHH-202ENST00000430104 LINC00528Q8N1L1 170 aa11.92□□□□□ -0.5
SHH-202ENST00000430104 A0A096LNJ9 63 aa11.91□□□□□ -0.5
SHH-202ENST00000430104 A0A0J9YXV3 536 aa11.91□□□□□ -0.5
SHH-202ENST00000430104 C2orf48Q96LS8 159 aa11.91□□□□□ -0.5
SHH-202ENST00000430104 GEMIN7Q9H840 131 aaKnown RBP11.91□□□□□ -0.5
SHH-202ENST00000430104 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP11.9□□□□□ -0.5
SHH-202ENST00000430104 HBDP02042 147 aa11.9□□□□□ -0.5
SHH-202ENST00000430104 NDUFA6P56556 154 aa11.9□□□□□ -0.5
SHH-202ENST00000430104 MAJINQ3KP22 176 aa11.9□□□□□ -0.5
SHH-202ENST00000430104 A0A096LNI7 61 aa11.89□□□□□ -0.51
SHH-202ENST00000430104 SCO1O75880 301 aa11.89□□□□□ -0.51
SHH-202ENST00000430104 HERVK_113P63121 156 aa11.89□□□□□ -0.51
SHH-202ENST00000430104 SEC11AP67812 179 aa11.89□□□□□ -0.51
SHH-202ENST00000430104 FAM19A3Q7Z5A8 133 aa11.89□□□□□ -0.51
SHH-202ENST00000430104 CST9LQ9H4G1 147 aa11.89□□□□□ -0.51
SHH-202ENST00000430104 COLCA2A8K830 154 aa11.88□□□□□ -0.51
SHH-202ENST00000430104 PMVKQ15126 192 aa11.88□□□□□ -0.51
SHH-202ENST00000430104 SPACA4Q8TDM5 124 aa11.88□□□□□ -0.51
SHH-202ENST00000430104 CDKN2A-AS1Q9UH64 79 aa11.88□□□□□ -0.51
SHH-202ENST00000430104 A0A087WYN8 130 aa11.87□□□□□ -0.51
SHH-202ENST00000430104 NDUFA1O15239 70 aa11.87□□□□□ -0.51
SHH-202ENST00000430104 CIRBPQ14011 172 aaKnown RBP11.87□□□□□ -0.51
SHH-202ENST00000430104 BAGE3Q86Y29 109 aa11.87□□□□□ -0.51
SHH-202ENST00000430104 TOMM7Q9P0U1 55 aa11.87□□□□□ -0.51
SHH-202ENST00000430104 PKIGQ9Y2B9 76 aa11.87□□□□□ -0.51
SHH-202ENST00000430104 LOC107984640A0A0U1RRK4 108 aa11.86□□□□□ -0.51
SHH-202ENST00000430104 GAGE2BQ13066 116 aa11.86□□□□□ -0.51
SHH-202ENST00000430104 UNQ6190/PRO20217Q6UXQ8 127 aa11.86□□□□□ -0.51
SHH-202ENST00000430104 LINC01561Q8N1V8 128 aa11.86□□□□□ -0.51
SHH-202ENST00000430104 LINC00469Q8N7U9 141 aa11.86□□□□□ -0.51
SHH-202ENST00000430104 CHCHD1Q96BP2 118 aaKnown RBP11.86□□□□□ -0.51
SHH-202ENST00000430104 PACRGQ96M98 296 aaPredicted RBP11.86□□□□□ -0.51
SHH-202ENST00000430104 PLA2G1BP04054 148 aaKnown RBP11.85□□□□□ -0.51
SHH-202ENST00000430104 KIAA0087Q14695 138 aa11.85□□□□□ -0.51
SHH-202ENST00000430104 PDZD11Q5EBL8 140 aa11.85□□□□□ -0.51
SHH-202ENST00000430104 C10orf25Q5T742 122 aa11.85□□□□□ -0.51
SHH-202ENST00000430104 TINCRA0A1B0GVN0 87 aa11.84□□□□□ -0.51
SHH-202ENST00000430104 PRSS2P07478 247 aa11.84□□□□□ -0.51
SHH-202ENST00000430104 INAFM2P0DMQ5 153 aa11.84□□□□□ -0.51
SHH-202ENST00000430104 RPL18AQ02543 176 aaKnown RBP11.84□□□□□ -0.51
SHH-202ENST00000430104 C2orf82Q6UX34 121 aa11.84□□□□□ -0.51
SHH-202ENST00000430104 STPG4Q8N801 248 aa11.84□□□□□ -0.51
SHH-202ENST00000430104 ABCA13Q86UQ4 5058 aa11.83□□□□□ -0.52
SHH-202ENST00000430104 F8WDY8 70 aa11.83□□□□□ -0.52
SHH-202ENST00000430104 ATP5LO75964 103 aa11.83□□□□□ -0.52
SHH-202ENST00000430104 MRPL35Q9NZE8 188 aaKnown RBP11.83□□□□□ -0.52
SHH-202ENST00000430104 PCLOQ9Y6V0 5065 aa11.83□□□□□ -0.52
SHH-202ENST00000430104 FAT1Q14517 4588 aa11.82□□□□□ -0.52
SHH-202ENST00000430104 HSBP1O75506 76 aa11.82□□□□□ -0.52
SHH-202ENST00000430104 RNF151Q2KHN1 245 aa11.82□□□□□ -0.52
SHH-202ENST00000430104 C6orf226Q5I0X4 101 aa11.82□□□□□ -0.52
SHH-202ENST00000430104 C6orf48Q9UBA6 75 aa11.82□□□□□ -0.52
SHH-202ENST00000430104 PTTG1IPP53801 180 aa11.81□□□□□ -0.52
SHH-202ENST00000430104 FAM19A2Q8N3H0 131 aa11.81□□□□□ -0.52
SHH-202ENST00000430104 LINC00474Q9P2X8 69 aa11.81□□□□□ -0.52
SHH-202ENST00000430104 CKS1BP61024 79 aa11.8□□□□□ -0.52
SHH-202ENST00000430104 PLAC8Q9NZF1 115 aa11.8□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 60.4 ms