RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 HBBP68871 147 aa8.9□□□□□ -0.98
SDC1-204ENST00000429035 FAM19A5Q7Z5A7 132 aaPredicted RBP8.9□□□□□ -0.98
SDC1-204ENST00000429035 C20orf78Q9BR46 151 aa8.9□□□□□ -0.98
SDC1-204ENST00000429035 NAT8Q9UHE5 227 aa8.9□□□□□ -0.98
SDC1-204ENST00000429035 SMIM27A0A1W2PRY6 76 aa8.89□□□□□ -0.99
SDC1-204ENST00000429035 SPANXA1Q9NS26 97 aa8.89□□□□□ -0.99
SDC1-204ENST00000429035 A0A087WZ39 114 aa8.88□□□□□ -0.99
SDC1-204ENST00000429035 FAM168BA1KXE4 195 aa8.88□□□□□ -0.99
SDC1-204ENST00000429035 NPYP01303 97 aa8.88□□□□□ -0.99
SDC1-204ENST00000429035 GAGE2EQ4V326 116 aa8.88□□□□□ -0.99
SDC1-204ENST00000429035 IMMP2LQ96T52 175 aa8.88□□□□□ -0.99
SDC1-204ENST00000429035 MRPL35Q9NZE8 188 aaKnown RBP8.88□□□□□ -0.99
SDC1-204ENST00000429035 GAGE2DQ9UEU5 116 aa8.88□□□□□ -0.99
SDC1-204ENST00000429035 TGIF2-C20orf24A0A0A6YYL0 155 aa8.87□□□□□ -0.99
SDC1-204ENST00000429035 A0A1B0GW15 77 aa8.87□□□□□ -0.99
SDC1-204ENST00000429035 C9JQL5 133 aa8.87□□□□□ -0.99
SDC1-204ENST00000429035 F8W036 122 aa8.87□□□□□ -0.99
SDC1-204ENST00000429035 S100A8P05109 93 aa8.87□□□□□ -0.99
SDC1-204ENST00000429035 RPL32P62910 135 aaKnown RBP8.87□□□□□ -0.99
SDC1-204ENST00000429035 RNF151Q2KHN1 245 aa8.87□□□□□ -0.99
SDC1-204ENST00000429035 C10orf25Q5T742 122 aa8.87□□□□□ -0.99
SDC1-204ENST00000429035 TRBV24-1A0A075B6N3 115 aa8.86□□□□□ -0.99
SDC1-204ENST00000429035 UNQ6190/PRO20217Q6UXQ8 127 aa8.86□□□□□ -0.99
SDC1-204ENST00000429035 DIRC1Q969H9 104 aa8.86□□□□□ -0.99
SDC1-204ENST00000429035 C6orf48Q9UBA6 75 aa8.86□□□□□ -0.99
SDC1-204ENST00000429035 IGHV3OR16-9A0A0B4J2B5 98 aa8.85□□□□□ -0.99
SDC1-204ENST00000429035 IGLV7-43P04211 117 aa8.85□□□□□ -0.99
SDC1-204ENST00000429035 RAB5AP20339 215 aa8.85□□□□□ -0.99
SDC1-204ENST00000429035 IFI27P40305 119 aaPredicted RBP8.85□□□□□ -0.99
SDC1-204ENST00000429035 UBE2BP63146 152 aa8.85□□□□□ -0.99
SDC1-204ENST00000429035 MRPS36P82909 103 aaKnown RBP8.85□□□□□ -0.99
SDC1-204ENST00000429035 SRSF3P84103 164 aaKnown RBP8.85□□□□□ -0.99
SDC1-204ENST00000429035 PEA15Q15121 130 aa8.85□□□□□ -0.99
SDC1-204ENST00000429035 PRR26Q8N8Z3 221 aa8.85□□□□□ -0.99
SDC1-204ENST00000429035 RNF213Q63HN8 5207 aa8.84□□□□□ -0.99
SDC1-204ENST00000429035 A0A1B0GVG6 124 aa8.84□□□□□ -0.99
SDC1-204ENST00000429035 M0QXV9 152 aa8.84□□□□□ -0.99
SDC1-204ENST00000429035 FAM104AQ969W3 186 aa8.84□□□□□ -0.99
SDC1-204ENST00000429035 F8WDY8 70 aa8.83□□□□□ -1
SDC1-204ENST00000429035 ORMDL3Q8N138 153 aa8.83□□□□□ -1
SDC1-204ENST00000429035 SMDT1Q9H4I9 107 aa8.83□□□□□ -1
SDC1-204ENST00000429035 A0A1B0GXF2 115 aa8.82□□□□□ -1
SDC1-204ENST00000429035 H0Y9J4 135 aa8.82□□□□□ -1
SDC1-204ENST00000429035 PPBPP02775 128 aa8.82□□□□□ -1
SDC1-204ENST00000429035 TLX1NBP0CAT3 122 aa8.82□□□□□ -1
SDC1-204ENST00000429035 KRTAP11-1Q8IUC1 163 aa8.82□□□□□ -1
SDC1-204ENST00000429035 PRELID3AQ96N28 172 aa8.82□□□□□ -1
SDC1-204ENST00000429035 IGLV4-3A0A075B6K6 122 aa8.81□□□□□ -1
SDC1-204ENST00000429035 LOC389332A0A1B0GUA5 103 aa8.81□□□□□ -1
SDC1-204ENST00000429035 TMEM136Q6ZRR5 245 aa8.81□□□□□ -1
SDC1-204ENST00000429035 PACRGQ96M98 296 aaPredicted RBP8.81□□□□□ -1
SDC1-204ENST00000429035 UBE2D1P51668 147 aa8.8□□□□□ -1
SDC1-204ENST00000429035 C2orf82Q6UX34 121 aa8.8□□□□□ -1
SDC1-204ENST00000429035 TEX43Q6ZNM6 134 aa8.8□□□□□ -1
SDC1-204ENST00000429035 TMEM141Q96I45 108 aa8.8□□□□□ -1
SDC1-204ENST00000429035 C2orf88Q9BSF0 95 aa8.8□□□□□ -1
SDC1-204ENST00000429035 LPAP08519 4548 aa8.79□□□□□ -1
SDC1-204ENST00000429035 LINC00242Q5T6M2 205 aa8.79□□□□□ -1
SDC1-204ENST00000429035 TOMM7Q9P0U1 55 aa8.79□□□□□ -1
SDC1-204ENST00000429035 TRBV30A0A0K0K1B3 111 aa8.78□□□□□ -1
SDC1-204ENST00000429035 PRSS2P07478 247 aa8.78□□□□□ -1
SDC1-204ENST00000429035 KIAA0087Q14695 138 aa8.78□□□□□ -1
SDC1-204ENST00000429035 ZC2HC1BQ5TFG8 222 aa8.78□□□□□ -1
SDC1-204ENST00000429035 Q6ZN92 141 aa8.78□□□□□ -1
SDC1-204ENST00000429035 ATP5L2Q7Z4Y8 100 aa8.78□□□□□ -1
SDC1-204ENST00000429035 MAP1LC3AQ9H492 121 aa8.78□□□□□ -1
SDC1-204ENST00000429035 NDUFC2-KCTD14E9PQ53 114 aa8.77□□□□□ -1.01
SDC1-204ENST00000429035 PYGO1Q9Y3Y4 419 aa8.77□□□□□ -1.01
SDC1-204ENST00000429035 IGLV1-50A0A075B6I6 118 aa8.76□□□□□ -1.01
SDC1-204ENST00000429035 C9orf129Q5T035 196 aaKnown RBP8.76□□□□□ -1.01
SDC1-204ENST00000429035 KRTAP7-1Q8IUC3 87 aa8.76□□□□□ -1.01
SDC1-204ENST00000429035 LINC00469Q8N7U9 141 aa8.76□□□□□ -1.01
SDC1-204ENST00000429035 CYSLTR1Q9Y271 337 aa8.76□□□□□ -1.01
SDC1-204ENST00000429035 CKS1BP61024 79 aa8.75□□□□□ -1.01
SDC1-204ENST00000429035 C2orf66Q6UXQ4 117 aa8.75□□□□□ -1.01
SDC1-204ENST00000429035 KRTAP1-4P0C5Y4 121 aa8.73□□□□□ -1.01
SDC1-204ENST00000429035 PRR4Q16378 134 aa8.73□□□□□ -1.01
SDC1-204ENST00000429035 LINC00173Q6ZV60 143 aa8.73□□□□□ -1.01
SDC1-204ENST00000429035 VCX2Q9H322 139 aa8.73□□□□□ -1.01
SDC1-204ENST00000429035 LAMTOR2Q9Y2Q5 125 aa8.73□□□□□ -1.01
SDC1-204ENST00000429035 C6orf226Q5I0X4 101 aa8.72□□□□□ -1.01
SDC1-204ENST00000429035 Q8N8P6 123 aa8.72□□□□□ -1.01
SDC1-204ENST00000429035 XAGE1AQ9HD64 81 aa8.72□□□□□ -1.01
SDC1-204ENST00000429035 RPL13AP40429 203 aaKnown RBP8.71□□□□□ -1.02
SDC1-204ENST00000429035 ORMDL2Q53FV1 153 aa8.71□□□□□ -1.02
SDC1-204ENST00000429035 LINC01561Q8N1V8 128 aa8.71□□□□□ -1.02
SDC1-204ENST00000429035 ALKBH7Q9BT30 221 aaPredicted RBP8.71□□□□□ -1.02
SDC1-204ENST00000429035 PRSS47A8MTI9 375 aa8.69□□□□□ -1.02
SDC1-204ENST00000429035 Q8IZM0 81 aa8.69□□□□□ -1.02
SDC1-204ENST00000429035 AMELXQ99217 191 aa8.69□□□□□ -1.02
SDC1-204ENST00000429035 GEMIN7Q9H840 131 aaKnown RBP8.69□□□□□ -1.02
SDC1-204ENST00000429035 C22orf24Q9Y442 160 aa8.69□□□□□ -1.02
SDC1-204ENST00000429035 NUPR1O60356 82 aa8.68□□□□□ -1.02
SDC1-204ENST00000429035 ZNF861PO60384 105 aa8.68□□□□□ -1.02
SDC1-204ENST00000429035 MT-ND4LP03901 98 aa8.68□□□□□ -1.02
SDC1-204ENST00000429035 PNRC1Q12796 327 aaPredicted RBP8.68□□□□□ -1.02
SDC1-204ENST00000429035 ANAPC16Q96DE5 110 aa8.68□□□□□ -1.02
SDC1-204ENST00000429035 CTDSP1Q9GZU7 261 aa8.68□□□□□ -1.02
SDC1-204ENST00000429035 HERVK_113P63121 156 aa8.67□□□□□ -1.02
SDC1-204ENST00000429035 LBHQ53QV2 105 aaPredicted RBP8.67□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 104.2 ms