RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 C19orf84I3L1E1 186 aa7.56□□□□□ -1.2
USP54-204ENST00000422491 K7EQD1 137 aa7.56□□□□□ -1.2
USP54-204ENST00000422491 INSP01308 110 aa7.56□□□□□ -1.2
USP54-204ENST00000422491 Q5XG85 94 aa7.56□□□□□ -1.2
USP54-204ENST00000422491 IL17DQ8TAD2 202 aa7.56□□□□□ -1.2
USP54-204ENST00000422491 MAP6D1Q9H9H5 199 aa7.56□□□□□ -1.2
USP54-204ENST00000422491 UBE2E2Q96LR5 201 aa7.55□□□□□ -1.2
USP54-204ENST00000422491 SLPIP03973 132 aa7.55□□□□□ -1.2
USP54-204ENST00000422491 SLURP1P55000 103 aa7.55□□□□□ -1.2
USP54-204ENST00000422491 LINC00158P58513 81 aa7.55□□□□□ -1.2
USP54-204ENST00000422491 FHL2Q14192 279 aa7.55□□□□□ -1.2
USP54-204ENST00000422491 IGHV4-30-2A0A087WSY4 118 aa7.54□□□□□ -1.2
USP54-204ENST00000422491 TRAV25A0A0B4J276 109 aa7.54□□□□□ -1.2
USP54-204ENST00000422491 CCKP06307 115 aa7.54□□□□□ -1.2
USP54-204ENST00000422491 DEFB112Q30KQ8 113 aa7.54□□□□□ -1.2
USP54-204ENST00000422491 CSPG4Q6UVK1 2322 aa7.54□□□□□ -1.2
USP54-204ENST00000422491 TRGV1A0A0A0MS02 117 aa7.54□□□□□ -1.2
USP54-204ENST00000422491 C4orf26Q17RF5 130 aa7.54□□□□□ -1.2
USP54-204ENST00000422491 TOMM7Q9P0U1 55 aa7.54□□□□□ -1.2
USP54-204ENST00000422491 HILS1P60008 231 aa7.54□□□□□ -1.2
USP54-204ENST00000422491 IGF2RP11717 2491 aa7.53□□□□□ -1.2
USP54-204ENST00000422491 NCOR2Q9Y618 2525 aa7.53□□□□□ -1.2
USP54-204ENST00000422491 UCNP55089 124 aa7.53□□□□□ -1.2
USP54-204ENST00000422491 DEFB136Q30KP8 78 aa7.53□□□□□ -1.2
USP54-204ENST00000422491 ORMDL1Q9P0S3 153 aa7.53□□□□□ -1.2
USP54-204ENST00000422491 CHD8Q9HCK8 2581 aa7.53□□□□□ -1.2
USP54-204ENST00000422491 IBA57-AS1B1ANH7 110 aa7.53□□□□□ -1.2
USP54-204ENST00000422491 LY6G6DO95868 133 aa7.53□□□□□ -1.2
USP54-204ENST00000422491 C18orf65Q6ZTR6 163 aa7.53□□□□□ -1.2
USP54-204ENST00000422491 TMEM243Q9BU79 118 aa7.53□□□□□ -1.2
USP54-204ENST00000422491 CSMD2Q7Z408 3487 aa7.52□□□□□ -1.21
USP54-204ENST00000422491 UBE2L6O14933 153 aa7.52□□□□□ -1.21
USP54-204ENST00000422491 C1orf158Q8N1D5 194 aa7.52□□□□□ -1.21
USP54-204ENST00000422491 LINC00167Q96N53 147 aa7.52□□□□□ -1.21
USP54-204ENST00000422491 XCL2Q9UBD3 114 aa7.52□□□□□ -1.21
USP54-204ENST00000422491 TRBV6-4A0A1B0GX49 114 aa7.51□□□□□ -1.21
USP54-204ENST00000422491 NDUFC2-KCTD14E9PQ53 114 aa7.51□□□□□ -1.21
USP54-204ENST00000422491 GHRHP01286 108 aa7.51□□□□□ -1.21
USP54-204ENST00000422491 ATP5EP2Q5VTU8 51 aa7.51□□□□□ -1.21
USP54-204ENST00000422491 Q6ZTI0 123 aa7.51□□□□□ -1.21
USP54-204ENST00000422491 IGHV3OR16-9A0A0B4J2B5 98 aa7.51□□□□□ -1.21
USP54-204ENST00000422491 S100A7L2Q5SY68 101 aa7.51□□□□□ -1.21
USP54-204ENST00000422491 LYPD5Q6UWN5 251 aa7.51□□□□□ -1.21
USP54-204ENST00000422491 PAX4O43316 350 aa7.5□□□□□ -1.21
USP54-204ENST00000422491 NDUFC2O95298 119 aa7.5□□□□□ -1.21
USP54-204ENST00000422491 HRCT1Q6UXD1 115 aa7.5□□□□□ -1.21
USP54-204ENST00000422491 WFDC9Q8NEX5 89 aa7.5□□□□□ -1.21
USP54-204ENST00000422491 PFN2P35080 140 aa7.5□□□□□ -1.21
USP54-204ENST00000422491 MAP1AP78559 2803 aaPredicted RBP7.5□□□□□ -1.21
USP54-204ENST00000422491 CCL19Q99731 98 aa7.5□□□□□ -1.21
USP54-204ENST00000422491 ZNF702PQ9H963 129 aa7.5□□□□□ -1.21
USP54-204ENST00000422491 CELSR2Q9HCU4 2923 aa7.5□□□□□ -1.21
USP54-204ENST00000422491 TRAV23DV6A0A075B6W5 121 aa7.49□□□□□ -1.21
USP54-204ENST00000422491 B4DSR2 109 aa7.49□□□□□ -1.21
USP54-204ENST00000422491 JMJD7-PLA2G4BH0Y9G9 81 aa7.49□□□□□ -1.21
USP54-204ENST00000422491 FAM19A1Q7Z5A9 133 aa7.49□□□□□ -1.21
USP54-204ENST00000422491 A0A087WZ39 114 aa7.48□□□□□ -1.21
USP54-204ENST00000422491 IGLV4-60A0A075B6I1 120 aa7.48□□□□□ -1.21
USP54-204ENST00000422491 IGKV3OR2-268A0A0C4DH90 116 aa7.48□□□□□ -1.21
USP54-204ENST00000422491 C2CD3Q4AC94 2353 aa7.48□□□□□ -1.21
USP54-204ENST00000422491 ENHOQ6UWT2 76 aa7.48□□□□□ -1.21
USP54-204ENST00000422491 TRBV10-3A0A0K0K1G6 114 aa7.47□□□□□ -1.21
USP54-204ENST00000422491 LOC100131303A0A0U1RQF7 123 aa7.47□□□□□ -1.21
USP54-204ENST00000422491 NANOS2P60321 138 aaKnown RBP7.47□□□□□ -1.21
USP54-204ENST00000422491 DEFB114Q30KQ6 69 aa7.47□□□□□ -1.21
USP54-204ENST00000422491 ODF3L2Q3SX64 289 aa7.47□□□□□ -1.21
USP54-204ENST00000422491 A0A096LNT2 108 aa7.47□□□□□ -1.21
USP54-204ENST00000422491 Q8N814 137 aa7.47□□□□□ -1.21
USP54-204ENST00000422491 DYNLRB2Q8TF09 96 aa7.47□□□□□ -1.21
USP54-204ENST00000422491 EPM2AB3EWF7 344 aa7.46□□□□□ -1.21
USP54-204ENST00000422491 C20orf197Q8N268 126 aa7.46□□□□□ -1.21
USP54-204ENST00000422491 TMEM256-PLSCR3K7ERE1 68 aa7.45□□□□□ -1.22
USP54-204ENST00000422491 XCL1P47992 114 aa7.45□□□□□ -1.22
USP54-204ENST00000422491 NOP10Q9NPE3 64 aaKnown RBP7.45□□□□□ -1.22
USP54-204ENST00000422491 SPG11Q96JI7 2443 aa7.45□□□□□ -1.22
USP54-204ENST00000422491 FAM236DA0A1B0GTK5 79 aa7.44□□□□□ -1.22
USP54-204ENST00000422491 FAM236CP0DP71 79 aa7.44□□□□□ -1.22
USP54-204ENST00000422491 STHQ8IWL8 128 aa7.44□□□□□ -1.22
USP54-204ENST00000422491 H7BZZ5 65 aa7.43□□□□□ -1.22
USP54-204ENST00000422491 UBL5Q9BZL1 73 aa7.43□□□□□ -1.22
USP54-204ENST00000422491 TRBV6-8A0A0A6YYG3 113 aa7.43□□□□□ -1.22
USP54-204ENST00000422491 C4orf3Q8WVX3 66 aa7.43□□□□□ -1.22
USP54-204ENST00000422491 PLAC8L1A1L4L8 177 aa7.42□□□□□ -1.22
USP54-204ENST00000422491 C6orf226Q5I0X4 101 aa7.42□□□□□ -1.22
USP54-204ENST00000422491 C11orf68Q9H3H3 251 aaKnown RBP7.42□□□□□ -1.22
USP54-204ENST00000422491 PRR3P79522 188 aaKnown RBP7.42□□□□□ -1.22
USP54-204ENST00000422491 Q6YL49 198 aa7.42□□□□□ -1.22
USP54-204ENST00000422491 TMEM86BQ8N661 226 aa7.42□□□□□ -1.22
USP54-204ENST00000422491 LINC00959A0A1B0GUT2 108 aa7.42□□□□□ -1.22
USP54-204ENST00000422491 CUBNO60494 3623 aa7.41□□□□□ -1.22
USP54-204ENST00000422491 BCE1O60756 84 aa7.41□□□□□ -1.22
USP54-204ENST00000422491 MRAPQ8TCY5 172 aa7.41□□□□□ -1.22
USP54-204ENST00000422491 SERP1Q9Y6X1 66 aa7.41□□□□□ -1.22
USP54-204ENST00000422491 TRAV7A0A075B6U4 112 aa7.41□□□□□ -1.22
USP54-204ENST00000422491 LINC01356Q8N9X3 169 aa7.41□□□□□ -1.22
USP54-204ENST00000422491 CACNA1AO00555 2505 aa7.41□□□□□ -1.22
USP54-204ENST00000422491 NOTCH3Q9UM47 2321 aa7.41□□□□□ -1.22
USP54-204ENST00000422491 TRGV2A0A075B6R0 118 aa7.4□□□□□ -1.22
USP54-204ENST00000422491 AKAP9Q99996 3911 aa7.4□□□□□ -1.22
USP54-204ENST00000422491 NBPF19A0A087WUL8 3843 aa7.4□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms