RNA–Protein interactions for RNA: ENST00000414963.2

SF3B1-204, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 1 (best) BASIC

Gene SF3B1, Length 651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-204ENST00000414963 PMCHL2Q9BQD1 86 aa9.54□□□□□ -0.88
SF3B1-204ENST00000414963 GEMIN7Q9H840 131 aaKnown RBP9.54□□□□□ -0.88
SF3B1-204ENST00000414963 LYSTQ99698 3801 aa9.54□□□□□ -0.88
SF3B1-204ENST00000414963 RMI2Q96E14 147 aa9.53□□□□□ -0.88
SF3B1-204ENST00000414963 CHAC1Q9BUX1 264 aa9.53□□□□□ -0.88
SF3B1-204ENST00000414963 IGLV10-54A0A075B6I4 117 aa9.52□□□□□ -0.89
SF3B1-204ENST00000414963 ZNF22P17026 224 aaPredicted RBP9.52□□□□□ -0.89
SF3B1-204ENST00000414963 XCL1P47992 114 aa9.52□□□□□ -0.89
SF3B1-204ENST00000414963 FOXI1Q12951 378 aa9.52□□□□□ -0.89
SF3B1-204ENST00000414963 PYY3Q5JQD4 70 aa9.52□□□□□ -0.89
SF3B1-204ENST00000414963 LINC01561Q8N1V8 128 aa9.52□□□□□ -0.89
SF3B1-204ENST00000414963 C1orf43Q9BWL3 253 aa9.52□□□□□ -0.89
SF3B1-204ENST00000414963 COX11Q9Y6N1 276 aa9.52□□□□□ -0.89
SF3B1-204ENST00000414963 A0A087WZ39 114 aa9.51□□□□□ -0.89
SF3B1-204ENST00000414963 GAGE12HA6NDE8 117 aa9.51□□□□□ -0.89
SF3B1-204ENST00000414963 Q9HAA7 133 aa9.51□□□□□ -0.89
SF3B1-204ENST00000414963 CDKN2A-AS1Q9UH64 79 aa9.51□□□□□ -0.89
SF3B1-204ENST00000414963 IGKV2D-24A0A075B6R9 120 aa9.5□□□□□ -0.89
SF3B1-204ENST00000414963 LCE6AA0A183 80 aa9.5□□□□□ -0.89
SF3B1-204ENST00000414963 LINC00469Q8N7U9 141 aa9.5□□□□□ -0.89
SF3B1-204ENST00000414963 TM2D2Q9BX73 214 aa9.5□□□□□ -0.89
SF3B1-204ENST00000414963 H3BRM9 83 aa9.49□□□□□ -0.89
SF3B1-204ENST00000414963 COX7A2LO14548 114 aa9.49□□□□□ -0.89
SF3B1-204ENST00000414963 TMEM170BQ5T4T1 132 aa9.49□□□□□ -0.89
SF3B1-204ENST00000414963 DNAH6Q9C0G6 4158 aa9.49□□□□□ -0.89
SF3B1-204ENST00000414963 TMEM223A0PJW6 202 aa9.48□□□□□ -0.89
SF3B1-204ENST00000414963 M0R2N4 97 aa9.48□□□□□ -0.89
SF3B1-204ENST00000414963 SMIM6P0DI80 62 aa9.47□□□□□ -0.89
SF3B1-204ENST00000414963 Q6ZRN7 208 aaPredicted RBP9.47□□□□□ -0.89
SF3B1-204ENST00000414963 C5orf38Q86SI9 138 aa9.47□□□□□ -0.89
SF3B1-204ENST00000414963 ATOH7Q8N100 152 aa9.47□□□□□ -0.89
SF3B1-204ENST00000414963 IGLV5-39A0A0G2JS06 123 aa9.46□□□□□ -0.9
SF3B1-204ENST00000414963 C6orf223Q8N319 242 aa9.46□□□□□ -0.9
SF3B1-204ENST00000414963 STPG4Q8N801 248 aa9.46□□□□□ -0.9
SF3B1-204ENST00000414963 MAPKAPK5-AS1Q8N8E1 139 aa9.46□□□□□ -0.9
SF3B1-204ENST00000414963 SMIM1B2RUZ4 78 aa9.45□□□□□ -0.9
SF3B1-204ENST00000414963 HERVK_113P61574 105 aa9.45□□□□□ -0.9
SF3B1-204ENST00000414963 IGHV3-64A0A075B6Q5 118 aa9.44□□□□□ -0.9
SF3B1-204ENST00000414963 IGHV1-58A0A0C4DH39 117 aa9.44□□□□□ -0.9
SF3B1-204ENST00000414963 hDV102S1A0JD36 115 aa9.44□□□□□ -0.9
SF3B1-204ENST00000414963 E9PLD3 99 aa9.44□□□□□ -0.9
SF3B1-204ENST00000414963 APOMO95445 188 aa9.44□□□□□ -0.9
SF3B1-204ENST00000414963 SPINK8P0C7L1 97 aa9.44□□□□□ -0.9
SF3B1-204ENST00000414963 MALP21145 153 aa9.44□□□□□ -0.9
SF3B1-204ENST00000414963 HSBP1L1C9JCN9 74 aa9.43□□□□□ -0.9
SF3B1-204ENST00000414963 MAJINQ3KP22 176 aa9.43□□□□□ -0.9
SF3B1-204ENST00000414963 C1orf134Q5TEV5 83 aa9.43□□□□□ -0.9
SF3B1-204ENST00000414963 CFAP161Q6P656 301 aa9.43□□□□□ -0.9
SF3B1-204ENST00000414963 LEPROTO15243 131 aa9.42□□□□□ -0.9
SF3B1-204ENST00000414963 CDPF1Q6NVV7 123 aa9.42□□□□□ -0.9
SF3B1-204ENST00000414963 KMT2AQ03164 3969 aa9.41□□□□□ -0.9
SF3B1-204ENST00000414963 ANKRD39Q53RE8 183 aa9.41□□□□□ -0.9
SF3B1-204ENST00000414963 C15orf56Q8N910 161 aa9.41□□□□□ -0.9
SF3B1-204ENST00000414963 PLEKHB2Q96CS7 222 aa9.41□□□□□ -0.9
SF3B1-204ENST00000414963 VAMP8Q9BV40 100 aa9.41□□□□□ -0.9
SF3B1-204ENST00000414963 GVQW2A0A096LPI5 108 aaPredicted RBP9.4□□□□□ -0.9
SF3B1-204ENST00000414963 PSCAO43653 123 aa9.4□□□□□ -0.9
SF3B1-204ENST00000414963 KIAA0087Q14695 138 aa9.4□□□□□ -0.9
SF3B1-204ENST00000414963 SACSQ9NZJ4 4579 aa9.39□□□□□ -0.91
SF3B1-204ENST00000414963 IGKV2D-26A0A0A0MRZ7 120 aa9.39□□□□□ -0.91
SF3B1-204ENST00000414963 LRCOL1A6NCL2 159 aa9.39□□□□□ -0.91
SF3B1-204ENST00000414963 USP17L23D6RBM5 183 aa9.39□□□□□ -0.91
SF3B1-204ENST00000414963 S100A12P80511 92 aa9.39□□□□□ -0.91
SF3B1-204ENST00000414963 Q8IZM0 81 aa9.39□□□□□ -0.91
SF3B1-204ENST00000414963 COX7B2Q8TF08 81 aa9.39□□□□□ -0.91
SF3B1-204ENST00000414963 ORAOV1Q8WV07 137 aa9.39□□□□□ -0.91
SF3B1-204ENST00000414963 J3QQQ9 107 aa9.38□□□□□ -0.91
SF3B1-204ENST00000414963 PAM16Q9Y3D7 125 aa9.38□□□□□ -0.91
SF3B1-204ENST00000414963 F8WDY8 70 aa9.37□□□□□ -0.91
SF3B1-204ENST00000414963 TSPEAR-AS2P59090 65 aa9.37□□□□□ -0.91
SF3B1-204ENST00000414963 SPAG11BQ08648 103 aa9.37□□□□□ -0.91
SF3B1-204ENST00000414963 SPATA45Q537H7 98 aa9.37□□□□□ -0.91
SF3B1-204ENST00000414963 LINC00518Q8N0U6 118 aa9.37□□□□□ -0.91
SF3B1-204ENST00000414963 PRSS2P07478 247 aa9.36□□□□□ -0.91
SF3B1-204ENST00000414963 C14orf177Q52M58 125 aa9.36□□□□□ -0.91
SF3B1-204ENST00000414963 C6orf226Q5I0X4 101 aa9.36□□□□□ -0.91
SF3B1-204ENST00000414963 NTN5Q8WTR8 489 aaPredicted RBP9.36□□□□□ -0.91
SF3B1-204ENST00000414963 C2orf48Q96LS8 159 aa9.36□□□□□ -0.91
SF3B1-204ENST00000414963 C12orf57Q99622 126 aa9.36□□□□□ -0.91
SF3B1-204ENST00000414963 TOMM7Q9P0U1 55 aa9.36□□□□□ -0.91
SF3B1-204ENST00000414963 DNAH2Q9P225 4427 aa9.36□□□□□ -0.91
SF3B1-204ENST00000414963 ZNF561-AS1K7EIQ3 104 aa9.35□□□□□ -0.91
SF3B1-204ENST00000414963 RTL8CO15255 209 aa9.35□□□□□ -0.91
SF3B1-204ENST00000414963 LGALS3P17931 250 aaKnown RBP9.35□□□□□ -0.91
SF3B1-204ENST00000414963 CXCL5P42830 114 aa9.35□□□□□ -0.91
SF3B1-204ENST00000414963 NMUP48645 174 aa9.35□□□□□ -0.91
SF3B1-204ENST00000414963 WFDC2Q14508 124 aa9.35□□□□□ -0.91
SF3B1-204ENST00000414963 SFTA2Q6UW10 78 aa9.35□□□□□ -0.91
SF3B1-204ENST00000414963 ZNF625Q96I27 306 aaPredicted RBP9.35□□□□□ -0.91
SF3B1-204ENST00000414963 A0A087WTM6 91 aa9.34□□□□□ -0.91
SF3B1-204ENST00000414963 NDUFA1O15239 70 aa9.34□□□□□ -0.91
SF3B1-204ENST00000414963 HIGD2BQ4VC39 106 aa9.34□□□□□ -0.91
SF3B1-204ENST00000414963 NDUFA12Q9UI09 145 aa9.34□□□□□ -0.91
SF3B1-204ENST00000414963 LECT2O14960 151 aa9.33□□□□□ -0.92
SF3B1-204ENST00000414963 DLEU1O43261 78 aa9.33□□□□□ -0.92
SF3B1-204ENST00000414963 COX8AP10176 69 aa9.33□□□□□ -0.92
SF3B1-204ENST00000414963 CKS1BP61024 79 aa9.33□□□□□ -0.92
SF3B1-204ENST00000414963 PCP2Q8IVA1 136 aa9.33□□□□□ -0.92
SF3B1-204ENST00000414963 DNAH10Q8IVF4 4471 aa9.33□□□□□ -0.92
SF3B1-204ENST00000414963 MYMXA0A1B0GTQ4 84 aa9.32□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 77 ms