RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 ACANP16112 2415 aa9.59□□□□□ -0.87
COL6A3-206ENST00000409809 FAM215AQ9Y5M1 114 aa9.59□□□□□ -0.87
COL6A3-206ENST00000409809 SLURP1P55000 103 aa9.58□□□□□ -0.88
COL6A3-206ENST00000409809 IGIPA6NJ69 53 aa9.58□□□□□ -0.88
COL6A3-206ENST00000409809 IGF1P05019 195 aa9.58□□□□□ -0.88
COL6A3-206ENST00000409809 C8orf87E5RJ46 101 aa9.57□□□□□ -0.88
COL6A3-206ENST00000409809 PIP4P1Q86T03 277 aa9.57□□□□□ -0.88
COL6A3-206ENST00000409809 RITA1Q96K30 269 aa9.57□□□□□ -0.88
COL6A3-206ENST00000409809 A0A087WZ39 114 aa9.57□□□□□ -0.88
COL6A3-206ENST00000409809 COX8CQ7Z4L0 72 aa9.57□□□□□ -0.88
COL6A3-206ENST00000409809 TP53AIP1Q9HCN2 124 aa9.57□□□□□ -0.88
COL6A3-206ENST00000409809 RNF223E7ERA6 249 aa9.57□□□□□ -0.88
COL6A3-206ENST00000409809 KLLNB2CW77 178 aa9.56□□□□□ -0.88
COL6A3-206ENST00000409809 C10orf25Q5T742 122 aa9.56□□□□□ -0.88
COL6A3-206ENST00000409809 SPTBN4Q9H254 2564 aa9.56□□□□□ -0.88
COL6A3-206ENST00000409809 MAP6D1Q9H9H5 199 aa9.56□□□□□ -0.88
COL6A3-206ENST00000409809 CRIP1P50238 77 aa9.56□□□□□ -0.88
COL6A3-206ENST00000409809 LINC00310P59036 64 aa9.56□□□□□ -0.88
COL6A3-206ENST00000409809 USP9YO00507 2555 aaPredicted RBP9.56□□□□□ -0.88
COL6A3-206ENST00000409809 CEMP1Q6PRD7 247 aaPredicted RBP9.56□□□□□ -0.88
COL6A3-206ENST00000409809 K7EQG2 157 aa9.56□□□□□ -0.88
COL6A3-206ENST00000409809 HCG22E2RYF7 251 aa9.55□□□□□ -0.88
COL6A3-206ENST00000409809 NANOS2P60321 138 aaKnown RBP9.55□□□□□ -0.88
COL6A3-206ENST00000409809 LINC01561Q8N1V8 128 aa9.55□□□□□ -0.88
COL6A3-206ENST00000409809 WFDC13Q8IUB5 93 aa9.55□□□□□ -0.88
COL6A3-206ENST00000409809 ODF3BA8MYP8 253 aa9.55□□□□□ -0.88
COL6A3-206ENST00000409809 C22orf34Q6ZV56 151 aa9.55□□□□□ -0.88
COL6A3-206ENST00000409809 CD164Q04900 197 aa9.55□□□□□ -0.88
COL6A3-206ENST00000409809 E7EUB6 86 aa9.54□□□□□ -0.88
COL6A3-206ENST00000409809 ERC2-IT1O76042 136 aa9.54□□□□□ -0.88
COL6A3-206ENST00000409809 IGFL2Q6UWQ7 119 aa9.54□□□□□ -0.88
COL6A3-206ENST00000409809 HILS1P60008 231 aa9.54□□□□□ -0.88
COL6A3-206ENST00000409809 SPAG11AQ6PDA7 123 aa9.54□□□□□ -0.88
COL6A3-206ENST00000409809 Q6ZS46 218 aa9.54□□□□□ -0.88
COL6A3-206ENST00000409809 LINC01546A6NGU7 62 aa9.53□□□□□ -0.88
COL6A3-206ENST00000409809 FAM19A1Q7Z5A9 133 aa9.53□□□□□ -0.88
COL6A3-206ENST00000409809 F8W735 103 aaPredicted RBP9.53□□□□□ -0.88
COL6A3-206ENST00000409809 SYCNQ0VAF6 134 aa9.53□□□□□ -0.88
COL6A3-206ENST00000409809 CYP4F30PQ9H0H9 118 aa9.53□□□□□ -0.88
COL6A3-206ENST00000409809 LINC01547P58512 204 aaPredicted RBP9.52□□□□□ -0.88
COL6A3-206ENST00000409809 CHCHD7Q9BUK0 85 aa9.52□□□□□ -0.89
COL6A3-206ENST00000409809 CRYGDP07320 174 aa9.52□□□□□ -0.89
COL6A3-206ENST00000409809 IGLV4-69A0A075B6H9 119 aa9.51□□□□□ -0.89
COL6A3-206ENST00000409809 JMJD1CQ15652 2540 aa9.51□□□□□ -0.89
COL6A3-206ENST00000409809 C1orf137Q5JT78 98 aa9.51□□□□□ -0.89
COL6A3-206ENST00000409809 LY6G6EA0A0G2JKS1 128 aa9.5□□□□□ -0.89
COL6A3-206ENST00000409809 DEFB136Q30KP8 78 aa9.5□□□□□ -0.89
COL6A3-206ENST00000409809 U3KQA8 63 aa9.5□□□□□ -0.89
COL6A3-206ENST00000409809 LINC01548A6NM66 108 aa9.5□□□□□ -0.89
COL6A3-206ENST00000409809 H0Y9P7 68 aa9.5□□□□□ -0.89
COL6A3-206ENST00000409809 UNQ9165/PRO28630Q6UXU0 137 aa9.5□□□□□ -0.89
COL6A3-206ENST00000409809 PRM2P04554 102 aa9.5□□□□□ -0.89
COL6A3-206ENST00000409809 COL4A3Q01955 1670 aa9.5□□□□□ -0.89
COL6A3-206ENST00000409809 PRR4Q16378 134 aa9.49□□□□□ -0.89
COL6A3-206ENST00000409809 Q96MF0 132 aa9.49□□□□□ -0.89
COL6A3-206ENST00000409809 PSMG3-AS1Q96PY0 264 aa9.49□□□□□ -0.89
COL6A3-206ENST00000409809 RNASE3P12724 160 aaKnown RBP9.49□□□□□ -0.89
COL6A3-206ENST00000409809 CEP295Q9C0D2 2601 aa9.49□□□□□ -0.89
COL6A3-206ENST00000409809 AMELXQ99217 191 aa9.48□□□□□ -0.89
COL6A3-206ENST00000409809 BRWD1-AS2P59051 145 aa9.47□□□□□ -0.89
COL6A3-206ENST00000409809 Q6ZTI0 123 aa9.47□□□□□ -0.89
COL6A3-206ENST00000409809 EGFEM1PQ0D2K5 195 aa9.47□□□□□ -0.89
COL6A3-206ENST00000409809 FBXL19-AS1Q494R0 122 aa9.47□□□□□ -0.89
COL6A3-206ENST00000409809 RETNLBQ9BQ08 111 aa9.47□□□□□ -0.89
COL6A3-206ENST00000409809 POLQO75417 2590 aa9.47□□□□□ -0.89
COL6A3-206ENST00000409809 POM121L12Q8N7R1 296 aa9.47□□□□□ -0.89
COL6A3-206ENST00000409809 MAPK1IP1LQ8NDC0 245 aa9.47□□□□□ -0.89
COL6A3-206ENST00000409809 ANKRD17O75179 2603 aaKnown RBP9.47□□□□□ -0.89
COL6A3-206ENST00000409809 J3QKU1 62 aa9.47□□□□□ -0.89
COL6A3-206ENST00000409809 LELP1Q5T871 98 aa9.46□□□□□ -0.89
COL6A3-206ENST00000409809 Q6ZVQ6 151 aa9.46□□□□□ -0.89
COL6A3-206ENST00000409809 CDC42SE2Q9NRR3 84 aa9.46□□□□□ -0.89
COL6A3-206ENST00000409809 A0A087WVE0 104 aa9.46□□□□□ -0.89
COL6A3-206ENST00000409809 C7orf33Q8WU49 177 aa9.46□□□□□ -0.9
COL6A3-206ENST00000409809 NHLRC4P0CG21 123 aaPredicted RBP9.45□□□□□ -0.9
COL6A3-206ENST00000409809 IGHV4-30-2A0A087WSY4 118 aa9.45□□□□□ -0.9
COL6A3-206ENST00000409809 DEFB135Q30KP9 77 aa9.45□□□□□ -0.9
COL6A3-206ENST00000409809 SMIM1B2RUZ4 78 aa9.45□□□□□ -0.9
COL6A3-206ENST00000409809 DAZAP2Q15038 168 aaPredicted RBP9.44□□□□□ -0.9
COL6A3-206ENST00000409809 Q8N7P7 452 aa9.44□□□□□ -0.9
COL6A3-206ENST00000409809 LY6LH3BQJ8 138 aa9.44□□□□□ -0.9
COL6A3-206ENST00000409809 C4orf26Q17RF5 130 aa9.44□□□□□ -0.9
COL6A3-206ENST00000409809 A6NDX4 124 aa9.44□□□□□ -0.9
COL6A3-206ENST00000409809 RPL37AP8A6NKH3 93 aa9.44□□□□□ -0.9
COL6A3-206ENST00000409809 LINC00959A0A1B0GUT2 108 aa9.44□□□□□ -0.9
COL6A3-206ENST00000409809 TNFRSF13BO14836 293 aaPredicted RBP9.43□□□□□ -0.9
COL6A3-206ENST00000409809 LINC00846Q9NV44 126 aa9.43□□□□□ -0.9
COL6A3-206ENST00000409809 BEAN1Q3B7T3 259 aa9.43□□□□□ -0.9
COL6A3-206ENST00000409809 SMAD5-AS1Q9Y6J3 95 aa9.43□□□□□ -0.9
COL6A3-206ENST00000409809 A0A087WYN8 130 aa9.43□□□□□ -0.9
COL6A3-206ENST00000409809 LINC00575Q6W349 94 aa9.43□□□□□ -0.9
COL6A3-206ENST00000409809 CRIP2P52943 208 aaPredicted RBP9.42□□□□□ -0.9
COL6A3-206ENST00000409809 SBSPONQ8IVN8 264 aa9.42□□□□□ -0.9
COL6A3-206ENST00000409809 A0A0J9YWU9 116 aa9.42□□□□□ -0.9
COL6A3-206ENST00000409809 IGHV4-38-2P0DP08 117 aa9.42□□□□□ -0.9
COL6A3-206ENST00000409809 XAGE1AQ9HD64 81 aa9.42□□□□□ -0.9
COL6A3-206ENST00000409809 ACYP2P14621 99 aa9.42□□□□□ -0.9
COL6A3-206ENST00000409809 LINC00242Q5T6M2 205 aa9.41□□□□□ -0.9
COL6A3-206ENST00000409809 LOC110117498A0A087WWA1 95 aa9.41□□□□□ -0.9
COL6A3-206ENST00000409809 LRCOL1A6NCL2 159 aa9.41□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 61 ms