RNA–Protein interactions for RNA: ENST00000409251.7

PTPRN-202, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

TSL 1 (best) BASIC

Gene PTPRN, Length 3,622 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-202ENST00000409251 AKAP9Q99996 3911 aa9.42□□□□□ -0.9
PTPRN-202ENST00000409251 C19orf54Q5BKX5 351 aa9.42□□□□□ -0.9
PTPRN-202ENST00000409251 ZNF702PQ9H963 129 aa9.42□□□□□ -0.9
PTPRN-202ENST00000409251 TENM1Q9UKZ4 2725 aa9.42□□□□□ -0.9
PTPRN-202ENST00000409251 J3KT08 172 aa9.42□□□□□ -0.9
PTPRN-202ENST00000409251 UQCRQO14949 82 aa9.42□□□□□ -0.9
PTPRN-202ENST00000409251 TRACP01848 142 aa9.42□□□□□ -0.9
PTPRN-202ENST00000409251 PSMB8P28062 276 aa9.42□□□□□ -0.9
PTPRN-202ENST00000409251 COX6A2Q02221 97 aa9.42□□□□□ -0.9
PTPRN-202ENST00000409251 Q6ZSN1 163 aa9.42□□□□□ -0.9
PTPRN-202ENST00000409251 LINC00308Q8TCZ7 52 aa9.42□□□□□ -0.9
PTPRN-202ENST00000409251 HRCT1Q6UXD1 115 aa9.41□□□□□ -0.9
PTPRN-202ENST00000409251 IGLV1-40P01703 118 aa9.41□□□□□ -0.9
PTPRN-202ENST00000409251 LINC00643Q86TS7 51 aa9.41□□□□□ -0.9
PTPRN-202ENST00000409251 LITAFQ99732 161 aa9.41□□□□□ -0.9
PTPRN-202ENST00000409251 ESM1Q9NQ30 184 aa9.41□□□□□ -0.9
PTPRN-202ENST00000409251 XCL2Q9UBD3 114 aa9.41□□□□□ -0.9
PTPRN-202ENST00000409251 U3KQE9 123 aa9.41□□□□□ -0.9
PTPRN-202ENST00000409251 PAX4O43316 350 aa9.41□□□□□ -0.9
PTPRN-202ENST00000409251 CRPP02741 224 aa9.41□□□□□ -0.9
PTPRN-202ENST00000409251 NCR3O14931 201 aa9.4□□□□□ -0.9
PTPRN-202ENST00000409251 APRG1Q8IVJ8 170 aa9.4□□□□□ -0.9
PTPRN-202ENST00000409251 FAM218AQ96MZ4 157 aa9.4□□□□□ -0.9
PTPRN-202ENST00000409251 MAST4O15021 2626 aa9.4□□□□□ -0.9
PTPRN-202ENST00000409251 CITED2Q99967 270 aaPredicted RBP9.4□□□□□ -0.9
PTPRN-202ENST00000409251 DNAJC9-AS1A6NH13 148 aa9.39□□□□□ -0.91
PTPRN-202ENST00000409251 CYSTM1Q9H1C7 97 aa9.39□□□□□ -0.91
PTPRN-202ENST00000409251 SMIM9A6NGZ8 99 aa9.39□□□□□ -0.91
PTPRN-202ENST00000409251 TRGV1A0A0A0MS02 117 aa9.39□□□□□ -0.91
PTPRN-202ENST00000409251 KLLNB2CW77 178 aa9.39□□□□□ -0.91
PTPRN-202ENST00000409251 SOCS3O14543 225 aa9.39□□□□□ -0.91
PTPRN-202ENST00000409251 TRAV23DV6A0A075B6W5 121 aa9.38□□□□□ -0.91
PTPRN-202ENST00000409251 COX7A2LO14548 114 aa9.38□□□□□ -0.91
PTPRN-202ENST00000409251 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP9.38□□□□□ -0.91
PTPRN-202ENST00000409251 J3QLI3 93 aa9.38□□□□□ -0.91
PTPRN-202ENST00000409251 LECT2O14960 151 aa9.38□□□□□ -0.91
PTPRN-202ENST00000409251 DNAJC30Q96LL9 226 aa9.38□□□□□ -0.91
PTPRN-202ENST00000409251 DYNLRB2Q8TF09 96 aa9.37□□□□□ -0.91
PTPRN-202ENST00000409251 NSD1Q96L73 2696 aaPredicted RBP9.37□□□□□ -0.91
PTPRN-202ENST00000409251 STAB1Q9NY15 2570 aa9.37□□□□□ -0.91
PTPRN-202ENST00000409251 SOSTDC1Q6X4U4 206 aa9.37□□□□□ -0.91
PTPRN-202ENST00000409251 A0A0J9YX75 114 aa9.36□□□□□ -0.91
PTPRN-202ENST00000409251 C4orf26Q17RF5 130 aa9.36□□□□□ -0.91
PTPRN-202ENST00000409251 UBE2L6O14933 153 aa9.36□□□□□ -0.91
PTPRN-202ENST00000409251 MED14OSP0DP75 135 aa9.36□□□□□ -0.91
PTPRN-202ENST00000409251 MRPS36P82909 103 aaKnown RBP9.36□□□□□ -0.91
PTPRN-202ENST00000409251 C9orf129Q5T035 196 aaKnown RBP9.36□□□□□ -0.91
PTPRN-202ENST00000409251 MIR7-3HGQ8N6C7 128 aa9.36□□□□□ -0.91
PTPRN-202ENST00000409251 COX7CP15954 63 aa9.36□□□□□ -0.91
PTPRN-202ENST00000409251 RPL36AP83881 106 aaKnown RBP9.36□□□□□ -0.91
PTPRN-202ENST00000409251 RPL36ALQ969Q0 106 aaKnown RBP9.36□□□□□ -0.91
PTPRN-202ENST00000409251 HILS1P60008 231 aa9.35□□□□□ -0.91
PTPRN-202ENST00000409251 CLPSL2Q6UWE3 100 aa9.35□□□□□ -0.91
PTPRN-202ENST00000409251 DCANP1Q8TF63 244 aa9.35□□□□□ -0.91
PTPRN-202ENST00000409251 TRBV6-5A0A0K0K1A5 114 aa9.35□□□□□ -0.91
PTPRN-202ENST00000409251 TRBV7-7A0A0K0K1E9 115 aa9.35□□□□□ -0.91
PTPRN-202ENST00000409251 C5orf47Q569G3 176 aa9.35□□□□□ -0.91
PTPRN-202ENST00000409251 MALP21145 153 aa9.34□□□□□ -0.91
PTPRN-202ENST00000409251 C5orf38Q86SI9 138 aa9.34□□□□□ -0.91
PTPRN-202ENST00000409251 UBE2D4Q9Y2X8 147 aa9.34□□□□□ -0.91
PTPRN-202ENST00000409251 A0A087WYN8 130 aa9.33□□□□□ -0.92
PTPRN-202ENST00000409251 INAFM2P0DMQ5 153 aa9.33□□□□□ -0.92
PTPRN-202ENST00000409251 C9orf85Q96MD7 179 aa9.33□□□□□ -0.92
PTPRN-202ENST00000409251 SPANXDQ9BXN6 97 aa9.33□□□□□ -0.92
PTPRN-202ENST00000409251 SND1-IT1Q9HBX3 110 aa9.33□□□□□ -0.92
PTPRN-202ENST00000409251 SPANXCQ9NY87 97 aa9.33□□□□□ -0.92
PTPRN-202ENST00000409251 RBMY1A1P0DJD3 496 aaKnown RBP9.33□□□□□ -0.92
PTPRN-202ENST00000409251 RBMY1CP0DJD4 496 aa9.33□□□□□ -0.92
PTPRN-202ENST00000409251 RBMY1FQ15415 496 aaKnown RBP9.33□□□□□ -0.92
PTPRN-202ENST00000409251 LINC00526Q96FQ7 95 aa9.33□□□□□ -0.92
PTPRN-202ENST00000409251 TRRAPQ9Y4A5 3859 aa9.33□□□□□ -0.92
PTPRN-202ENST00000409251 C20orf197Q8N268 126 aa9.33□□□□□ -0.92
PTPRN-202ENST00000409251 FAM240AA0A1B0GVK7 77 aa9.32□□□□□ -0.92
PTPRN-202ENST00000409251 ACYP1P07311 99 aa9.32□□□□□ -0.92
PTPRN-202ENST00000409251 WFDC10AQ9H1F0 79 aa9.32□□□□□ -0.92
PTPRN-202ENST00000409251 INAFM1C9JVW0 142 aa9.32□□□□□ -0.92
PTPRN-202ENST00000409251 LINC00846Q9NV44 126 aa9.32□□□□□ -0.92
PTPRN-202ENST00000409251 NOTCH1P46531 2555 aa9.31□□□□□ -0.92
PTPRN-202ENST00000409251 ATOX1O00244 68 aa9.31□□□□□ -0.92
PTPRN-202ENST00000409251 CHCHD7Q9BUK0 85 aa9.3□□□□□ -0.92
PTPRN-202ENST00000409251 COL6A5A8TX70 2615 aa9.3□□□□□ -0.92
PTPRN-202ENST00000409251 USP17L23D6RBM5 183 aa9.3□□□□□ -0.92
PTPRN-202ENST00000409251 H3BUA1 57 aa9.3□□□□□ -0.92
PTPRN-202ENST00000409251 LRRC75A-AS1Q8N1F1 130 aa9.3□□□□□ -0.92
PTPRN-202ENST00000409251 LINC00242Q5T6M2 205 aa9.29□□□□□ -0.92
PTPRN-202ENST00000409251 CXCL5P42830 114 aa9.29□□□□□ -0.92
PTPRN-202ENST00000409251 SPANXA1Q9NS26 97 aa9.29□□□□□ -0.92
PTPRN-202ENST00000409251 A0A096LPF7 62 aa9.29□□□□□ -0.92
PTPRN-202ENST00000409251 NDUFA1O15239 70 aa9.29□□□□□ -0.92
PTPRN-202ENST00000409251 TRGV2A0A075B6R0 118 aa9.28□□□□□ -0.92
PTPRN-202ENST00000409251 FSHBP01225 129 aa9.28□□□□□ -0.92
PTPRN-202ENST00000409251 PRR3P79522 188 aaKnown RBP9.28□□□□□ -0.92
PTPRN-202ENST00000409251 ZNF415Q09FC8 603 aa9.28□□□□□ -0.92
PTPRN-202ENST00000409251 FAM19A4Q96LR4 140 aa9.28□□□□□ -0.92
PTPRN-202ENST00000409251 GHRHP01286 108 aa9.28□□□□□ -0.92
PTPRN-202ENST00000409251 HAMPP81172 84 aa9.28□□□□□ -0.92
PTPRN-202ENST00000409251 LY6G6DO95868 133 aa9.27□□□□□ -0.92
PTPRN-202ENST00000409251 RPL18AQ02543 176 aaKnown RBP9.27□□□□□ -0.92
PTPRN-202ENST00000409251 ENHOQ6UWT2 76 aa9.27□□□□□ -0.92
PTPRN-202ENST00000409251 LINC01006Q8NI28 216 aa9.27□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms