RNA–Protein interactions for RNA: ENST00000401473.7

HMGA1-204, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,887 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-204ENST00000401473 DNAH5Q8TE73 4624 aa10.51□□□□□ -0.73
HMGA1-204ENST00000401473 IGHV3OR16-9A0A0B4J2B5 98 aa10.5□□□□□ -0.73
HMGA1-204ENST00000401473 LEPROTL1O95214 131 aa10.5□□□□□ -0.73
HMGA1-204ENST00000401473 PMVKQ15126 192 aa10.5□□□□□ -0.73
HMGA1-204ENST00000401473 IFI27L1Q96BM0 104 aa10.5□□□□□ -0.73
HMGA1-204ENST00000401473 A0A0J9YXV3 536 aa10.48□□□□□ -0.73
HMGA1-204ENST00000401473 PRSS1P07477 247 aa10.48□□□□□ -0.73
HMGA1-204ENST00000401473 FAM19A3Q7Z5A8 133 aa10.48□□□□□ -0.73
HMGA1-204ENST00000401473 C5orf38Q86SI9 138 aa10.48□□□□□ -0.73
HMGA1-204ENST00000401473 USP17L23D6RBM5 183 aa10.47□□□□□ -0.73
HMGA1-204ENST00000401473 FUSP35637 526 aaKnown RBP eCLIP10.47□□□□□ -0.73
HMGA1-204ENST00000401473 C15orf56Q8N910 161 aa10.46□□□□□ -0.74
HMGA1-204ENST00000401473 KRTAP10-2P60368 255 aa10.45□□□□□ -0.74
HMGA1-204ENST00000401473 Q8N814 137 aa10.45□□□□□ -0.74
HMGA1-204ENST00000401473 HSPB8Q9UJY1 196 aa10.45□□□□□ -0.74
HMGA1-204ENST00000401473 COX7A2LO14548 114 aa10.44□□□□□ -0.74
HMGA1-204ENST00000401473 IGLV4-69A0A075B6H9 119 aa10.44□□□□□ -0.74
HMGA1-204ENST00000401473 TINCRA0A1B0GVN0 87 aa10.44□□□□□ -0.74
HMGA1-204ENST00000401473 CDKN2A-AS1Q9UH64 79 aa10.44□□□□□ -0.74
HMGA1-204ENST00000401473 A0A087WZ39 114 aa10.43□□□□□ -0.74
HMGA1-204ENST00000401473 TRAV12-1A0A0B4J245 112 aa10.43□□□□□ -0.74
HMGA1-204ENST00000401473 H0Y8G0 127 aa10.43□□□□□ -0.74
HMGA1-204ENST00000401473 S100A6P06703 90 aa10.42□□□□□ -0.74
HMGA1-204ENST00000401473 SNRPEP62304 92 aaKnown RBP10.42□□□□□ -0.74
HMGA1-204ENST00000401473 HERVK_113P63121 156 aa10.42□□□□□ -0.74
HMGA1-204ENST00000401473 HIST3H2BBQ8N257 126 aa10.42□□□□□ -0.74
HMGA1-204ENST00000401473 IGLV2-33A0A075B6J2 118 aaPredicted RBP10.42□□□□□ -0.74
HMGA1-204ENST00000401473 SEC11AP67812 179 aa10.42□□□□□ -0.74
HMGA1-204ENST00000401473 GEMIN7Q9H840 131 aaKnown RBP10.42□□□□□ -0.74
HMGA1-204ENST00000401473 DYNC1H1Q14204 4646 aaKnown RBP10.42□□□□□ -0.74
HMGA1-204ENST00000401473 SLPIP03973 132 aa10.41□□□□□ -0.74
HMGA1-204ENST00000401473 IGLC3P0DOY3 106 aa10.41□□□□□ -0.74
HMGA1-204ENST00000401473 MALP21145 153 aa10.41□□□□□ -0.74
HMGA1-204ENST00000401473 ODF1Q14990 250 aa10.41□□□□□ -0.74
HMGA1-204ENST00000401473 HIGD2BQ4VC39 106 aa10.41□□□□□ -0.74
HMGA1-204ENST00000401473 SPATA12Q7Z6I5 190 aa10.41□□□□□ -0.74
HMGA1-204ENST00000401473 LINC00526Q96FQ7 95 aa10.41□□□□□ -0.74
HMGA1-204ENST00000401473 MRPL35Q9NZE8 188 aaKnown RBP10.41□□□□□ -0.74
HMGA1-204ENST00000401473 CHTOPQ9Y3Y2 248 aaKnown RBP10.41□□□□□ -0.74
HMGA1-204ENST00000401473 LRP1BQ9NZR2 4599 aa10.41□□□□□ -0.74
HMGA1-204ENST00000401473 IGLV5-45A0A087WSX0 123 aa10.4□□□□□ -0.74
HMGA1-204ENST00000401473 C5orf52A6NGY3 159 aa10.4□□□□□ -0.74
HMGA1-204ENST00000401473 EREGO14944 169 aa10.4□□□□□ -0.74
HMGA1-204ENST00000401473 NTN5Q8WTR8 489 aaPredicted RBP10.4□□□□□ -0.74
HMGA1-204ENST00000401473 PACRGQ96M98 296 aaPredicted RBP10.4□□□□□ -0.74
HMGA1-204ENST00000401473 IGHV1-58A0A0C4DH39 117 aa10.4□□□□□ -0.75
HMGA1-204ENST00000401473 hDV102S1A0JD36 115 aa10.4□□□□□ -0.75
HMGA1-204ENST00000401473 C11orf86A6NJI1 115 aa10.4□□□□□ -0.75
HMGA1-204ENST00000401473 CFAP161Q6P656 301 aa10.4□□□□□ -0.75
HMGA1-204ENST00000401473 MAP1LC3CQ9BXW4 147 aa10.4□□□□□ -0.75
HMGA1-204ENST00000401473 LINC00469Q8N7U9 141 aa10.39□□□□□ -0.75
HMGA1-204ENST00000401473 HIST1H2BLQ99880 126 aa10.39□□□□□ -0.75
HMGA1-204ENST00000401473 CHAC1Q9BUX1 264 aa10.39□□□□□ -0.75
HMGA1-204ENST00000401473 BIRC6Q9NR09 4857 aa10.39□□□□□ -0.75
HMGA1-204ENST00000401473 IGHV3-64A0A075B6Q5 118 aa10.38□□□□□ -0.75
HMGA1-204ENST00000401473 GVQW2A0A096LPI5 108 aaPredicted RBP10.38□□□□□ -0.75
HMGA1-204ENST00000401473 F8VRH5 84 aa10.38□□□□□ -0.75
HMGA1-204ENST00000401473 SYS1-DBNDD2H3BUS1 97 aa10.38□□□□□ -0.75
HMGA1-204ENST00000401473 PMCHL2Q9BQD1 86 aa10.38□□□□□ -0.75
HMGA1-204ENST00000401473 C3orf79P0CE67 100 aa10.38□□□□□ -0.75
HMGA1-204ENST00000401473 ZNF22P17026 224 aaPredicted RBP10.38□□□□□ -0.75
HMGA1-204ENST00000401473 C14orf177Q52M58 125 aa10.38□□□□□ -0.75
HMGA1-204ENST00000401473 PGPEP1Q9NXJ5 209 aa10.37□□□□□ -0.75
HMGA1-204ENST00000401473 APOMO95445 188 aa10.36□□□□□ -0.75
HMGA1-204ENST00000401473 LINC01561Q8N1V8 128 aa10.36□□□□□ -0.75
HMGA1-204ENST00000401473 ORAOV1Q8WV07 137 aa10.36□□□□□ -0.75
HMGA1-204ENST00000401473 KIAA0087Q14695 138 aa10.36□□□□□ -0.75
HMGA1-204ENST00000401473 LINC00518Q8N0U6 118 aa10.36□□□□□ -0.75
HMGA1-204ENST00000401473 SMIM1B2RUZ4 78 aa10.35□□□□□ -0.75
HMGA1-204ENST00000401473 SPINK8P0C7L1 97 aa10.35□□□□□ -0.75
HMGA1-204ENST00000401473 S100A2P29034 98 aa10.35□□□□□ -0.75
HMGA1-204ENST00000401473 LINC01620Q4KN68 170 aa10.35□□□□□ -0.75
HMGA1-204ENST00000401473 ZNF561-AS1K7EIQ3 104 aa10.34□□□□□ -0.75
HMGA1-204ENST00000401473 AKR1D1P51857 326 aa10.34□□□□□ -0.75
HMGA1-204ENST00000401473 KRTDAPP60985 99 aa10.34□□□□□ -0.75
HMGA1-204ENST00000401473 TMEM170BQ5T4T1 132 aa10.34□□□□□ -0.75
HMGA1-204ENST00000401473 OR10D4PQ8NGN7 298 aa10.34□□□□□ -0.75
HMGA1-204ENST00000401473 IGLV5-52A0A0A0MRZ9 124 aa10.34□□□□□ -0.75
HMGA1-204ENST00000401473 CNBPP62633 177 aaKnown RBP10.33□□□□□ -0.76
HMGA1-204ENST00000401473 SPAG11BQ08648 103 aa10.33□□□□□ -0.76
HMGA1-204ENST00000401473 KIAA1109Q2LD37 5005 aa10.32□□□□□ -0.76
HMGA1-204ENST00000401473 LINC01545Q5VT33 79 aa10.32□□□□□ -0.76
HMGA1-204ENST00000401473 PET117Q6UWS5 81 aa10.32□□□□□ -0.76
HMGA1-204ENST00000401473 CDPF1Q6NVV7 123 aa10.32□□□□□ -0.76
HMGA1-204ENST00000401473 TOMM7Q9P0U1 55 aa10.32□□□□□ -0.76
HMGA1-204ENST00000401473 C16orf90A8MZG2 172 aa10.31□□□□□ -0.76
HMGA1-204ENST00000401473 H3BRM9 83 aa10.31□□□□□ -0.76
HMGA1-204ENST00000401473 DPM2O94777 84 aa10.31□□□□□ -0.76
HMGA1-204ENST00000401473 C9orf163Q8N9P6 203 aa10.31□□□□□ -0.76
HMGA1-204ENST00000401473 IGLV5-39A0A0G2JS06 123 aa10.3□□□□□ -0.76
HMGA1-204ENST00000401473 TMEM223A0PJW6 202 aa10.3□□□□□ -0.76
HMGA1-204ENST00000401473 IGKCP01834 107 aa10.3□□□□□ -0.76
HMGA1-204ENST00000401473 PLNP26678 52 aa10.3□□□□□ -0.76
HMGA1-204ENST00000401473 C10orf25Q5T742 122 aa10.3□□□□□ -0.76
HMGA1-204ENST00000401473 C2orf82Q6UX34 121 aa10.3□□□□□ -0.76
HMGA1-204ENST00000401473 UNQ6190/PRO20217Q6UXQ8 127 aa10.3□□□□□ -0.76
HMGA1-204ENST00000401473 Q6ZRU5 148 aa10.3□□□□□ -0.76
HMGA1-204ENST00000401473 Q8IZM0 81 aa10.3□□□□□ -0.76
HMGA1-204ENST00000401473 C2orf48Q96LS8 159 aa10.3□□□□□ -0.76
HMGA1-204ENST00000401473 DNAH8Q96JB1 4490 aa10.29□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms