RNA–Protein interactions for RNA: ENST00000397053.6

UPF2-203, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 5 BASIC

Gene UPF2, Length 5,369 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-203ENST00000397053 MAST4O15021 2626 aa5.28□□□□□ -1.56
UPF2-203ENST00000397053 IGLV2-14P01704 120 aa5.28□□□□□ -1.56
UPF2-203ENST00000397053 C1orf137Q5JT78 98 aa5.28□□□□□ -1.56
UPF2-203ENST00000397053 ATRQ13535 2644 aa5.28□□□□□ -1.56
UPF2-203ENST00000397053 ARHGAP21Q5T5U3 1957 aa5.28□□□□□ -1.56
UPF2-203ENST00000397053 CHCHD7Q9BUK0 85 aa5.28□□□□□ -1.56
UPF2-203ENST00000397053 PYGO1Q9Y3Y4 419 aa5.27□□□□□ -1.57
UPF2-203ENST00000397053 ARHGAP32A7KAX9 2087 aa5.27□□□□□ -1.57
UPF2-203ENST00000397053 MGAM2Q2M2H8 2515 aa5.27□□□□□ -1.57
UPF2-203ENST00000397053 EGFEM1PQ0D2K5 195 aa5.27□□□□□ -1.57
UPF2-203ENST00000397053 ESRGQ1W209 222 aa5.27□□□□□ -1.57
UPF2-203ENST00000397053 SIPA1L1O43166 1804 aa5.27□□□□□ -1.57
UPF2-203ENST00000397053 FRMPD3Q5JV73 1810 aa5.27□□□□□ -1.57
UPF2-203ENST00000397053 ANK1P16157 1881 aa5.27□□□□□ -1.57
UPF2-203ENST00000397053 TRBV27A0A0K0K1C4 114 aa5.27□□□□□ -1.57
UPF2-203ENST00000397053 SPINK1P00995 79 aa5.27□□□□□ -1.57
UPF2-203ENST00000397053 Q6ZTC4 211 aa5.27□□□□□ -1.57
UPF2-203ENST00000397053 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP5.27□□□□□ -1.57
UPF2-203ENST00000397053 MUC7Q8TAX7 377 aa5.27□□□□□ -1.57
UPF2-203ENST00000397053 EPG5Q9HCE0 2579 aa5.26□□□□□ -1.57
UPF2-203ENST00000397053 A8MZ25 164 aa5.26□□□□□ -1.57
UPF2-203ENST00000397053 NDUFC2-KCTD14E9PQ53 114 aa5.26□□□□□ -1.57
UPF2-203ENST00000397053 IGHV6-1A0A0B4J1U7 121 aa5.26□□□□□ -1.57
UPF2-203ENST00000397053 UQCRQO14949 82 aa5.26□□□□□ -1.57
UPF2-203ENST00000397053 UNQ6190/PRO20217Q6UXQ8 127 aa5.26□□□□□ -1.57
UPF2-203ENST00000397053 A0A1B0GXF2 115 aa5.26□□□□□ -1.57
UPF2-203ENST00000397053 TRIAP1O43715 76 aa5.26□□□□□ -1.57
UPF2-203ENST00000397053 PRM2P04554 102 aa5.26□□□□□ -1.57
UPF2-203ENST00000397053 NDUFV3P56181 108 aaKnown RBP5.26□□□□□ -1.57
UPF2-203ENST00000397053 KRTAP10-9P60411 292 aa5.26□□□□□ -1.57
UPF2-203ENST00000397053 PLXNA4Q9HCM2 1894 aa5.25□□□□□ -1.57
UPF2-203ENST00000397053 NHLRC4P0CG21 123 aaPredicted RBP5.25□□□□□ -1.57
UPF2-203ENST00000397053 Q8IZM0 81 aa5.25□□□□□ -1.57
UPF2-203ENST00000397053 C2orf48Q96LS8 159 aa5.25□□□□□ -1.57
UPF2-203ENST00000397053 AGRNO00468 2067 aa5.25□□□□□ -1.57
UPF2-203ENST00000397053 COX6A2Q02221 97 aa5.25□□□□□ -1.57
UPF2-203ENST00000397053 COX17Q14061 63 aa5.25□□□□□ -1.57
UPF2-203ENST00000397053 Q6ZS46 218 aa5.25□□□□□ -1.57
UPF2-203ENST00000397053 NDUFC1O43677 76 aa5.25□□□□□ -1.57
UPF2-203ENST00000397053 RETNLBQ9BQ08 111 aa5.25□□□□□ -1.57
UPF2-203ENST00000397053 A0A0U1RQV1 116 aa5.24□□□□□ -1.57
UPF2-203ENST00000397053 CDPF1Q6NVV7 123 aa5.24□□□□□ -1.57
UPF2-203ENST00000397053 REG3GQ6UW15 175 aa5.24□□□□□ -1.57
UPF2-203ENST00000397053 POM121L12Q8N7R1 296 aa5.24□□□□□ -1.57
UPF2-203ENST00000397053 TRBV7-6A0A0J9YX20 115 aa5.24□□□□□ -1.57
UPF2-203ENST00000397053 ODF3L2Q3SX64 289 aa5.24□□□□□ -1.57
UPF2-203ENST00000397053 LINC00208Q96KT6 92 aa5.24□□□□□ -1.57
UPF2-203ENST00000397053 CELA1Q9UNI1 258 aa5.24□□□□□ -1.57
UPF2-203ENST00000397053 SNURFQ9Y675 71 aa5.24□□□□□ -1.57
UPF2-203ENST00000397053 TRBV30A0A0K0K1B3 111 aa5.24□□□□□ -1.57
UPF2-203ENST00000397053 TIMM17BO60830 172 aa5.23□□□□□ -1.57
UPF2-203ENST00000397053 TSHBP01222 138 aa5.23□□□□□ -1.57
UPF2-203ENST00000397053 AVPP01185 164 aa5.23□□□□□ -1.57
UPF2-203ENST00000397053 IGLV1-40P01703 118 aa5.23□□□□□ -1.57
UPF2-203ENST00000397053 RNASE3P12724 160 aaKnown RBP5.23□□□□□ -1.57
UPF2-203ENST00000397053 Q6JHZ5 121 aa5.23□□□□□ -1.57
UPF2-203ENST00000397053 IGLV1-51P01701 117 aa5.23□□□□□ -1.57
UPF2-203ENST00000397053 P0C879 139 aa5.23□□□□□ -1.57
UPF2-203ENST00000397053 SMIM11BQ8TCY0 68 aa5.23□□□□□ -1.57
UPF2-203ENST00000397053 MBD6Q96DN6 1003 aa5.23□□□□□ -1.57
UPF2-203ENST00000397053 KLLNB2CW77 178 aa5.23□□□□□ -1.57
UPF2-203ENST00000397053 MRPS36P82909 103 aaKnown RBP5.23□□□□□ -1.57
UPF2-203ENST00000397053 LIMD2Q9BT23 127 aa5.22□□□□□ -1.57
UPF2-203ENST00000397053 TANC2Q9HCD6 1990 aa5.22□□□□□ -1.57
UPF2-203ENST00000397053 NTM-AS1Q6ZSK4 140 aa5.22□□□□□ -1.57
UPF2-203ENST00000397053 FAM30AQ9NZY2 134 aa5.22□□□□□ -1.57
UPF2-203ENST00000397053 PLXNA3P51805 1871 aa5.22□□□□□ -1.57
UPF2-203ENST00000397053 ATP5EP56381 51 aaPredicted RBP5.22□□□□□ -1.57
UPF2-203ENST00000397053 Q6Q795 121 aa5.22□□□□□ -1.57
UPF2-203ENST00000397053 CDC42SE2Q9NRR3 84 aa5.22□□□□□ -1.57
UPF2-203ENST00000397053 BRWD1-AS2P59051 145 aa5.22□□□□□ -1.57
UPF2-203ENST00000397053 TRBV10-3A0A0K0K1G6 114 aa5.21□□□□□ -1.58
UPF2-203ENST00000397053 Q8N6K4 173 aa5.21□□□□□ -1.58
UPF2-203ENST00000397053 C1orf229Q6ZS94 237 aaPredicted RBP5.21□□□□□ -1.58
UPF2-203ENST00000397053 FAM229AH3BQW9 127 aa5.21□□□□□ -1.58
UPF2-203ENST00000397053 LINC01547P58512 204 aaPredicted RBP5.21□□□□□ -1.58
UPF2-203ENST00000397053 Q9BRP9 147 aa5.21□□□□□ -1.58
UPF2-203ENST00000397053 CRIP1P50238 77 aa5.2□□□□□ -1.58
UPF2-203ENST00000397053 DENND4AQ7Z401 1863 aa5.2□□□□□ -1.58
UPF2-203ENST00000397053 A0A087WSZ3 146 aa5.2□□□□□ -1.58
UPF2-203ENST00000397053 C9orf116Q5BN46 136 aaPredicted RBP5.2□□□□□ -1.58
UPF2-203ENST00000397053 MAPKAPK5-AS1Q8N8E1 139 aa5.2□□□□□ -1.58
UPF2-203ENST00000397053 POLR2KP53803 58 aaKnown RBP5.2□□□□□ -1.58
UPF2-203ENST00000397053 RNASE8Q8TDE3 154 aaKnown RBP5.2□□□□□ -1.58
UPF2-203ENST00000397053 ADAMTS9Q9P2N4 1935 aa5.2□□□□□ -1.58
UPF2-203ENST00000397053 PRR9Q5T870 116 aa5.19□□□□□ -1.58
UPF2-203ENST00000397053 MT-ATP8P03928 68 aa5.19□□□□□ -1.58
UPF2-203ENST00000397053 PCOTHQ58A44 107 aa5.19□□□□□ -1.58
UPF2-203ENST00000397053 RNF185Q96GF1 192 aa5.19□□□□□ -1.58
UPF2-203ENST00000397053 MRPS12O15235 138 aaKnown RBP5.19□□□□□ -1.58
UPF2-203ENST00000397053 PRO3102Q9H379 93 aa5.18□□□□□ -1.58
UPF2-203ENST00000397053 TSC2P49815 1807 aa5.18□□□□□ -1.58
UPF2-203ENST00000397053 hDV103S1A0JD37 113 aa5.18□□□□□ -1.58
UPF2-203ENST00000397053 J3QL48 77 aa5.18□□□□□ -1.58
UPF2-203ENST00000397053 ZSWIM8A7E2V4 1837 aa5.18□□□□□ -1.58
UPF2-203ENST00000397053 CDSNQ15517 529 aa5.18□□□□□ -1.58
UPF2-203ENST00000397053 LINC00242Q5T6M2 205 aa5.18□□□□□ -1.58
UPF2-203ENST00000397053 Q8N2B8 174 aa5.18□□□□□ -1.58
UPF2-203ENST00000397053 C11orf21Q9P2W6 132 aa5.18□□□□□ -1.58
UPF2-203ENST00000397053 IGKV2D-30A0A075B6S6 120 aa5.18□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 166 ms