RNA–Protein interactions for RNA: ENST00000395682.3

SHMT1-204, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 570 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-204ENST00000395682 IGLV4-69A0A075B6H9 119 aa15.07■□□□□ 0
SHMT1-204ENST00000395682 APOMO95445 188 aa15.07■□□□□ 0
SHMT1-204ENST00000395682 COX19Q49B96 90 aa15.07■□□□□ 0
SHMT1-204ENST00000395682 SPACA4Q8TDM5 124 aa15.07■□□□□ 0
SHMT1-204ENST00000395682 TMEM141Q96I45 108 aa15.07■□□□□ 0
SHMT1-204ENST00000395682 FLG2Q5D862 2391 aaPredicted RBP15.07■□□□□ 0
SHMT1-204ENST00000395682 APOC3P02656 99 aa15.06■□□□□ 0
SHMT1-204ENST00000395682 A0A087WYN8 130 aa15.05■□□□□ -0
SHMT1-204ENST00000395682 IGHV3OR16-9A0A0B4J2B5 98 aa15.05■□□□□ -0
SHMT1-204ENST00000395682 IGKV2-24A0A0C4DH68 120 aa15.04■□□□□ -0
SHMT1-204ENST00000395682 ALKBH7Q9BT30 221 aaPredicted RBP15.04■□□□□ -0
SHMT1-204ENST00000395682 G0S2P27469 103 aa15.03■□□□□ -0
SHMT1-204ENST00000395682 KRTAP10-4P60372 401 aaPredicted RBP15.03■□□□□ -0
SHMT1-204ENST00000395682 FABP9Q0Z7S8 132 aa15.03■□□□□ -0
SHMT1-204ENST00000395682 MAJINQ3KP22 176 aa15.03■□□□□ -0
SHMT1-204ENST00000395682 TEX43Q6ZNM6 134 aa15.03■□□□□ -0
SHMT1-204ENST00000395682 MRPL18Q9H0U6 180 aaKnown RBP15.03■□□□□ -0
SHMT1-204ENST00000395682 IGIPA6NJ69 53 aa15.02■□□□□ -0
SHMT1-204ENST00000395682 MT-ND6P03923 174 aa15.02■□□□□ -0
SHMT1-204ENST00000395682 NDUFA5Q16718 116 aa15.02■□□□□ -0
SHMT1-204ENST00000395682 LINC00242Q5T6M2 205 aa15.02■□□□□ -0
SHMT1-204ENST00000395682 Q6ZN92 141 aa15.02■□□□□ -0
SHMT1-204ENST00000395682 CAMK2N2Q96S95 79 aa15.02■□□□□ -0
SHMT1-204ENST00000395682 VCX2Q9H322 139 aa15.02■□□□□ -0
SHMT1-204ENST00000395682 A0A096LNI7 61 aa15.01□□□□□ -0.01
SHMT1-204ENST00000395682 TGIF2-C20orf24A0A0A6YYL0 155 aa15.01□□□□□ -0.01
SHMT1-204ENST00000395682 RPL37AP61513 92 aaKnown RBP15.01□□□□□ -0.01
SHMT1-204ENST00000395682 SPAG11BQ08648 103 aa15.01□□□□□ -0.01
SHMT1-204ENST00000395682 ZC2HC1BQ5TFG8 222 aa15.01□□□□□ -0.01
SHMT1-204ENST00000395682 Q6ZRU5 148 aa15.01□□□□□ -0.01
SHMT1-204ENST00000395682 C2orf48Q96LS8 159 aa15.01□□□□□ -0.01
SHMT1-204ENST00000395682 PKIGQ9Y2B9 76 aa15.01□□□□□ -0.01
SHMT1-204ENST00000395682 SNAPINO95295 136 aa15□□□□□ -0.01
SHMT1-204ENST00000395682 SVBPQ8N300 66 aa15□□□□□ -0.01
SHMT1-204ENST00000395682 OR10D4PQ8NGN7 298 aa15□□□□□ -0.01
SHMT1-204ENST00000395682 ORAOV1Q8WV07 137 aa15□□□□□ -0.01
SHMT1-204ENST00000395682 AMELXQ99217 191 aa15□□□□□ -0.01
SHMT1-204ENST00000395682 C2orf88Q9BSF0 95 aa15□□□□□ -0.01
SHMT1-204ENST00000395682 PLAC8Q9NZF1 115 aa15□□□□□ -0.01
SHMT1-204ENST00000395682 NPSP0C0P6 89 aa14.99□□□□□ -0.01
SHMT1-204ENST00000395682 UBE2D1P51668 147 aa14.98□□□□□ -0.01
SHMT1-204ENST00000395682 LINC00173Q6ZV60 143 aa14.98□□□□□ -0.01
SHMT1-204ENST00000395682 TOMM6Q96B49 74 aa14.98□□□□□ -0.01
SHMT1-204ENST00000395682 LINC00474Q9P2X8 69 aa14.98□□□□□ -0.01
SHMT1-204ENST00000395682 A0A087WZ39 114 aa14.97□□□□□ -0.01
SHMT1-204ENST00000395682 STPG4Q8N801 248 aa14.97□□□□□ -0.01
SHMT1-204ENST00000395682 MYCBP2O75592 4640 aa14.96□□□□□ -0.01
SHMT1-204ENST00000395682 LOC107984640A0A0U1RRK4 108 aa14.95□□□□□ -0.02
SHMT1-204ENST00000395682 LINC01546A6NGU7 62 aa14.95□□□□□ -0.02
SHMT1-204ENST00000395682 PAPPA-AS1Q5QFB9 102 aa14.95□□□□□ -0.02
SHMT1-204ENST00000395682 TIMM17AQ99595 171 aa14.95□□□□□ -0.02
SHMT1-204ENST00000395682 TRAPPC1Q9Y5R8 145 aa14.95□□□□□ -0.02
SHMT1-204ENST00000395682 GAGE2BQ13066 116 aa14.94□□□□□ -0.02
SHMT1-204ENST00000395682 SCGB3A1Q96QR1 104 aa14.94□□□□□ -0.02
SHMT1-204ENST00000395682 F8WDY8 70 aa14.93□□□□□ -0.02
SHMT1-204ENST00000395682 FA2HQ7L5A8 372 aa14.93□□□□□ -0.02
SHMT1-204ENST00000395682 ERASQ7Z444 233 aa14.93□□□□□ -0.02
SHMT1-204ENST00000395682 DMBT1Q9UGM3 2413 aaPredicted RBP14.93□□□□□ -0.02
SHMT1-204ENST00000395682 PTTG1IPP53801 180 aa14.92□□□□□ -0.02
SHMT1-204ENST00000395682 RNF151Q2KHN1 245 aa14.92□□□□□ -0.02
SHMT1-204ENST00000395682 A0A0J9YXV3 536 aa14.91□□□□□ -0.02
SHMT1-204ENST00000395682 SMCO4Q9NRQ5 59 aa14.91□□□□□ -0.02
SHMT1-204ENST00000395682 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP14.9□□□□□ -0.02
SHMT1-204ENST00000395682 NDUFA1O15239 70 aa14.9□□□□□ -0.02
SHMT1-204ENST00000395682 FAM19A3Q7Z5A8 133 aa14.9□□□□□ -0.02
SHMT1-204ENST00000395682 C7orf33Q8WU49 177 aa14.9□□□□□ -0.02
SHMT1-204ENST00000395682 MRPL35Q9NZE8 188 aaKnown RBP14.9□□□□□ -0.02
SHMT1-204ENST00000395682 LINC01549A6NIU2 74 aa14.89□□□□□ -0.03
SHMT1-204ENST00000395682 KIAA0087Q14695 138 aa14.89□□□□□ -0.03
SHMT1-204ENST00000395682 C10orf25Q5T742 122 aa14.89□□□□□ -0.03
SHMT1-204ENST00000395682 UNQ6190/PRO20217Q6UXQ8 127 aa14.89□□□□□ -0.03
SHMT1-204ENST00000395682 LINC01561Q8N1V8 128 aa14.89□□□□□ -0.03
SHMT1-204ENST00000395682 SEC11AP67812 179 aa14.87□□□□□ -0.03
SHMT1-204ENST00000395682 RPL18AQ02543 176 aaKnown RBP14.87□□□□□ -0.03
SHMT1-204ENST00000395682 HNRNPA3P51991 378 aaKnown RBP14.86□□□□□ -0.03
SHMT1-204ENST00000395682 HERVK_113P63121 156 aa14.86□□□□□ -0.03
SHMT1-204ENST00000395682 C18orf32Q8TCD1 76 aa14.86□□□□□ -0.03
SHMT1-204ENST00000395682 GEMIN7Q9H840 131 aaKnown RBP14.86□□□□□ -0.03
SHMT1-204ENST00000395682 KRTAP29-1A8MX34 341 aaPredicted RBP14.84□□□□□ -0.03
SHMT1-204ENST00000395682 J3QL48 77 aa14.84□□□□□ -0.03
SHMT1-204ENST00000395682 YPEL4Q96NS1 127 aa14.84□□□□□ -0.03
SHMT1-204ENST00000395682 C6orf48Q9UBA6 75 aa14.84□□□□□ -0.03
SHMT1-204ENST00000395682 CDKN2A-AS1Q9UH64 79 aa14.84□□□□□ -0.03
SHMT1-204ENST00000395682 LINC00614P0C842 121 aa14.83□□□□□ -0.04
SHMT1-204ENST00000395682 C2orf82Q6UX34 121 aa14.83□□□□□ -0.04
SHMT1-204ENST00000395682 CST9LQ9H4G1 147 aa14.83□□□□□ -0.04
SHMT1-204ENST00000395682 A0A1W2PNN7 141 aa14.82□□□□□ -0.04
SHMT1-204ENST00000395682 SLC7A5P1Q8MH63 180 aa14.82□□□□□ -0.04
SHMT1-204ENST00000395682 URB1-AS1Q96HZ7 61 aa14.82□□□□□ -0.04
SHMT1-204ENST00000395682 PRSS2P07478 247 aa14.81□□□□□ -0.04
SHMT1-204ENST00000395682 TOMM7Q9P0U1 55 aa14.81□□□□□ -0.04
SHMT1-204ENST00000395682 C6orf226Q5I0X4 101 aa14.8□□□□□ -0.04
SHMT1-204ENST00000395682 PACRGQ96M98 296 aaPredicted RBP14.8□□□□□ -0.04
SHMT1-204ENST00000395682 TRBV30A0A0K0K1B3 111 aa14.79□□□□□ -0.04
SHMT1-204ENST00000395682 TINCRA0A1B0GVN0 87 aa14.79□□□□□ -0.04
SHMT1-204ENST00000395682 TLX1NBP0CAT3 122 aa14.79□□□□□ -0.04
SHMT1-204ENST00000395682 PMVKQ15126 192 aa14.79□□□□□ -0.04
SHMT1-204ENST00000395682 C9orf116Q5BN46 136 aaPredicted RBP14.79□□□□□ -0.04
SHMT1-204ENST00000395682 LINC00469Q8N7U9 141 aa14.79□□□□□ -0.04
SHMT1-204ENST00000395682 HERC1Q15751 4861 aa14.78□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms