RNA–Protein interactions for RNA: ENST00000341594.9

SYNE1-201, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SYNE1, Length 26,584 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-201ENST00000341594 NDUFA12Q9UI09 145 aa2.67□□□□□ -1.98
SYNE1-201ENST00000341594 IGKV1-16P04430 117 aa2.67□□□□□ -1.98
SYNE1-201ENST00000341594 IGHV1-2P23083 117 aa2.67□□□□□ -1.98
SYNE1-201ENST00000341594 CDSNQ15517 529 aa2.67□□□□□ -1.98
SYNE1-201ENST00000341594 LECT2O14960 151 aa2.67□□□□□ -1.98
SYNE1-201ENST00000341594 Q6ZSN1 163 aa2.67□□□□□ -1.98
SYNE1-201ENST00000341594 Q6JHZ5 121 aa2.67□□□□□ -1.98
SYNE1-201ENST00000341594 Q86TA4 180 aa2.67□□□□□ -1.98
SYNE1-201ENST00000341594 SPRR3Q9UBC9 169 aa2.67□□□□□ -1.98
SYNE1-201ENST00000341594 ODF3L1Q8IXM7 274 aa2.66□□□□□ -1.98
SYNE1-201ENST00000341594 ZNF491Q8N8L2 437 aa2.66□□□□□ -1.98
SYNE1-201ENST00000341594 IGHV3-33P01772 117 aa2.66□□□□□ -1.98
SYNE1-201ENST00000341594 COX6A2Q02221 97 aa2.66□□□□□ -1.98
SYNE1-201ENST00000341594 EBI3Q14213 229 aa2.66□□□□□ -1.98
SYNE1-201ENST00000341594 ENHOQ6UWT2 76 aa2.66□□□□□ -1.98
SYNE1-201ENST00000341594 DEFB112Q30KQ8 113 aa2.66□□□□□ -1.98
SYNE1-201ENST00000341594 C9orf116Q5BN46 136 aaPredicted RBP2.66□□□□□ -1.98
SYNE1-201ENST00000341594 LIMD2Q9BT23 127 aa2.66□□□□□ -1.98
SYNE1-201ENST00000341594 CRIP1P50238 77 aa2.66□□□□□ -1.98
SYNE1-201ENST00000341594 PRSS33Q8NF86 280 aa2.66□□□□□ -1.98
SYNE1-201ENST00000341594 HIGD2BQ4VC39 106 aa2.66□□□□□ -1.98
SYNE1-201ENST00000341594 B3GALT5-AS1P59052 145 aa2.66□□□□□ -1.98
SYNE1-201ENST00000341594 LINC00269Q8N2A0 174 aa2.66□□□□□ -1.98
SYNE1-201ENST00000341594 C17orf100A8MU93 164 aa2.66□□□□□ -1.98
SYNE1-201ENST00000341594 DEFB123Q8N688 67 aa2.66□□□□□ -1.98
SYNE1-201ENST00000341594 IGHV3-30P01768 117 aa2.65□□□□□ -1.98
SYNE1-201ENST00000341594 IGHV3-30-5P0DP03 117 aa2.65□□□□□ -1.98
SYNE1-201ENST00000341594 SPAG11BQ08648 103 aa2.65□□□□□ -1.98
SYNE1-201ENST00000341594 SPAG11AQ6PDA7 123 aa2.65□□□□□ -1.98
SYNE1-201ENST00000341594 C16orf97H3BN30 126 aa2.65□□□□□ -1.98
SYNE1-201ENST00000341594 I3L3M4 83 aa2.65□□□□□ -1.98
SYNE1-201ENST00000341594 MSMPQ1L6U9 139 aa2.65□□□□□ -1.98
SYNE1-201ENST00000341594 NIPBLQ6KC79 2804 aaeCLIP2.65□□□□□ -1.98
SYNE1-201ENST00000341594 KLKP1Q107X0 134 aa2.65□□□□□ -1.98
SYNE1-201ENST00000341594 C9orf139Q6ZV77 190 aa2.65□□□□□ -1.98
SYNE1-201ENST00000341594 VWFP04275 2813 aa2.65□□□□□ -1.98
SYNE1-201ENST00000341594 PDZD2O15018 2839 aa2.65□□□□□ -1.98
SYNE1-201ENST00000341594 FAM223BA6NKX1 122 aa2.65□□□□□ -1.99
SYNE1-201ENST00000341594 FAM223AQ8IWN6 122 aa2.65□□□□□ -1.99
SYNE1-201ENST00000341594 WI2-2373I1.2A0A1W2PRP0 233 aa2.65□□□□□ -1.99
SYNE1-201ENST00000341594 IGFL3Q6UXB1 125 aa2.65□□□□□ -1.99
SYNE1-201ENST00000341594 ESRGQ1W209 222 aa2.65□□□□□ -1.99
SYNE1-201ENST00000341594 LST1O00453 97 aa2.65□□□□□ -1.99
SYNE1-201ENST00000341594 IGHV7-81A0A0B4J1V7 117 aa2.65□□□□□ -1.99
SYNE1-201ENST00000341594 CCL24O00175 119 aa2.65□□□□□ -1.99
SYNE1-201ENST00000341594 PSMG3-AS1Q96PY0 264 aa2.65□□□□□ -1.99
SYNE1-201ENST00000341594 GNLYP22749 145 aa2.65□□□□□ -1.99
SYNE1-201ENST00000341594 C2orf66Q6UXQ4 117 aa2.65□□□□□ -1.99
SYNE1-201ENST00000341594 Q8N9L7 120 aa2.65□□□□□ -1.99
SYNE1-201ENST00000341594 C15orf32Q32M92 178 aa2.65□□□□□ -1.99
SYNE1-201ENST00000341594 TRGV1A0A0A0MS02 117 aa2.65□□□□□ -1.99
SYNE1-201ENST00000341594 IGHV3-30-3P0DP02 117 aa2.65□□□□□ -1.99
SYNE1-201ENST00000341594 FAM19A1Q7Z5A9 133 aa2.65□□□□□ -1.99
SYNE1-201ENST00000341594 IGLV8-61A0A075B6I0 122 aa2.64□□□□□ -1.99
SYNE1-201ENST00000341594 H3BPC8 53 aa2.64□□□□□ -1.99
SYNE1-201ENST00000341594 TMEM61Q8N0U2 210 aa2.64□□□□□ -1.99
SYNE1-201ENST00000341594 TRAV10A0A0B4J240 114 aa2.64□□□□□ -1.99
SYNE1-201ENST00000341594 ELOF1P60002 83 aaKnown RBP2.64□□□□□ -1.99
SYNE1-201ENST00000341594 MGAQ8IWI9 3026 aa2.64□□□□□ -1.99
SYNE1-201ENST00000341594 H3BRN7 92 aa2.64□□□□□ -1.99
SYNE1-201ENST00000341594 NBEAQ8NFP9 2946 aa2.64□□□□□ -1.99
SYNE1-201ENST00000341594 SAP25Q8TEE9 199 aa2.64□□□□□ -1.99
SYNE1-201ENST00000341594 PRYO14603 147 aa2.64□□□□□ -1.99
SYNE1-201ENST00000341594 KTN1-AS1Q86SY8 53 aa2.64□□□□□ -1.99
SYNE1-201ENST00000341594 IGKV1-17P01599 117 aa2.64□□□□□ -1.99
SYNE1-201ENST00000341594 NOTCH2NLQ7Z3S9 236 aa2.64□□□□□ -1.99
SYNE1-201ENST00000341594 IGHV3OR16-9A0A0B4J2B5 98 aa2.64□□□□□ -1.99
SYNE1-201ENST00000341594 MRPS12O15235 138 aaKnown RBP2.64□□□□□ -1.99
SYNE1-201ENST00000341594 M0R2N4 97 aa2.64□□□□□ -1.99
SYNE1-201ENST00000341594 TRBV10-1A0A0K0K1A3 114 aa2.64□□□□□ -1.99
SYNE1-201ENST00000341594 ZNF73O43830 326 aaPredicted RBP2.64□□□□□ -1.99
SYNE1-201ENST00000341594 C6orf99Q4VX62 202 aa2.64□□□□□ -1.99
SYNE1-201ENST00000341594 SRRM2Q9UQ35 2752 aaKnown RBP2.64□□□□□ -1.99
SYNE1-201ENST00000341594 LOC100131303A0A0U1RQF7 123 aa2.64□□□□□ -1.99
SYNE1-201ENST00000341594 LYPD5Q6UWN5 251 aa2.64□□□□□ -1.99
SYNE1-201ENST00000341594 OBSCN-AS1Q96MR7 158 aa2.64□□□□□ -1.99
SYNE1-201ENST00000341594 LINC00467Q9BRT7 94 aa2.64□□□□□ -1.99
SYNE1-201ENST00000341594 XCL1P47992 114 aa2.64□□□□□ -1.99
SYNE1-201ENST00000341594 C7orf65Q6ZTY9 151 aa2.64□□□□□ -1.99
SYNE1-201ENST00000341594 A0A087WVE0 104 aa2.63□□□□□ -1.99
SYNE1-201ENST00000341594 POLR2KP53803 58 aaKnown RBP2.63□□□□□ -1.99
SYNE1-201ENST00000341594 BSPH1Q075Z2 132 aa2.63□□□□□ -1.99
SYNE1-201ENST00000341594 IGLV5-45A0A087WSX0 123 aa2.63□□□□□ -1.99
SYNE1-201ENST00000341594 BPY2O14599 106 aa2.63□□□□□ -1.99
SYNE1-201ENST00000341594 SPINK13Q1W4C9 94 aa2.63□□□□□ -1.99
SYNE1-201ENST00000341594 C11orf53Q8IXP5 236 aa2.63□□□□□ -1.99
SYNE1-201ENST00000341594 TMEM263Q8WUH6 116 aaKnown RBP2.63□□□□□ -1.99
SYNE1-201ENST00000341594 IGKV1D-17A0A075B6S4 117 aa2.63□□□□□ -1.99
SYNE1-201ENST00000341594 IGLV2-18A0A075B6J9 118 aa2.63□□□□□ -1.99
SYNE1-201ENST00000341594 Q6ZVQ6 151 aa2.63□□□□□ -1.99
SYNE1-201ENST00000341594 COX6B1P14854 86 aa2.63□□□□□ -1.99
SYNE1-201ENST00000341594 DEFB131AP59861 70 aa2.63□□□□□ -1.99
SYNE1-201ENST00000341594 TTTY12Q9BZ98 90 aa2.63□□□□□ -1.99
SYNE1-201ENST00000341594 Q96MF0 132 aa2.63□□□□□ -1.99
SYNE1-201ENST00000341594 RPL37AP8A6NKH3 93 aa2.63□□□□□ -1.99
SYNE1-201ENST00000341594 RPL28P46779 137 aaKnown RBP2.63□□□□□ -1.99
SYNE1-201ENST00000341594 LCA10Q71F78 164 aa2.63□□□□□ -1.99
SYNE1-201ENST00000341594 WFDC10AQ9H1F0 79 aa2.63□□□□□ -1.99
SYNE1-201ENST00000341594 TMEM223A0PJW6 202 aa2.63□□□□□ -1.99
SYNE1-201ENST00000341594 ADAMTSL4-AS1Q5T5F5 129 aa2.63□□□□□ -1.99
Retrieved 100 of 20,778 RNA–protein pairs in 64.1 ms