RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 A0A0J9YXV3 536 aa14.64□□□□□ -0.07
SDC3-202ENST00000339394 WFDC2Q14508 124 aa14.64□□□□□ -0.07
SDC3-202ENST00000339394 C5orf38Q86SI9 138 aa14.62□□□□□ -0.07
SDC3-202ENST00000339394 PKD1P98161 4303 aa14.62□□□□□ -0.07
SDC3-202ENST00000339394 SEC11AP67812 179 aa14.61□□□□□ -0.07
SDC3-202ENST00000339394 TRAV12-1A0A0B4J245 112 aa14.6□□□□□ -0.07
SDC3-202ENST00000339394 COX7A2LO14548 114 aa14.6□□□□□ -0.07
SDC3-202ENST00000339394 PACRGQ96M98 296 aaPredicted RBP14.6□□□□□ -0.07
SDC3-202ENST00000339394 TINCRA0A1B0GVN0 87 aa14.6□□□□□ -0.07
SDC3-202ENST00000339394 USP17L23D6RBM5 183 aa14.6□□□□□ -0.07
SDC3-202ENST00000339394 H0Y8G0 127 aa14.6□□□□□ -0.07
SDC3-202ENST00000339394 SNRPEP62304 92 aaKnown RBP14.6□□□□□ -0.07
SDC3-202ENST00000339394 HERVK_113P63121 156 aa14.6□□□□□ -0.07
SDC3-202ENST00000339394 HIST3H2BBQ8N257 126 aa14.6□□□□□ -0.07
SDC3-202ENST00000339394 GEMIN7Q9H840 131 aaKnown RBP14.6□□□□□ -0.07
SDC3-202ENST00000339394 MAP1LC3CQ9BXW4 147 aa14.59□□□□□ -0.07
SDC3-202ENST00000339394 CHTOPQ9Y3Y2 248 aaKnown RBP14.58□□□□□ -0.08
SDC3-202ENST00000339394 IGLV4-69A0A075B6H9 119 aa14.57□□□□□ -0.08
SDC3-202ENST00000339394 C5orf52A6NGY3 159 aa14.57□□□□□ -0.08
SDC3-202ENST00000339394 IGLC3P0DOY3 106 aa14.57□□□□□ -0.08
SDC3-202ENST00000339394 MALP21145 153 aa14.57□□□□□ -0.08
SDC3-202ENST00000339394 A0A087WZ39 114 aa14.56□□□□□ -0.08
SDC3-202ENST00000339394 EREGO14944 169 aa14.56□□□□□ -0.08
SDC3-202ENST00000339394 Q8N814 137 aa14.56□□□□□ -0.08
SDC3-202ENST00000339394 C15orf56Q8N910 161 aa14.56□□□□□ -0.08
SDC3-202ENST00000339394 CDKN2A-AS1Q9UH64 79 aa14.56□□□□□ -0.08
SDC3-202ENST00000339394 S100A2P29034 98 aa14.56□□□□□ -0.08
SDC3-202ENST00000339394 ODF1Q14990 250 aa14.56□□□□□ -0.08
SDC3-202ENST00000339394 CFAP161Q6P656 301 aa14.56□□□□□ -0.08
SDC3-202ENST00000339394 MRPL35Q9NZE8 188 aaKnown RBP14.56□□□□□ -0.08
SDC3-202ENST00000339394 LINC00469Q8N7U9 141 aa14.55□□□□□ -0.08
SDC3-202ENST00000339394 HIST1H2BLQ99880 126 aa14.55□□□□□ -0.08
SDC3-202ENST00000339394 CHAC1Q9BUX1 264 aa14.55□□□□□ -0.08
SDC3-202ENST00000339394 HECTD4Q9Y4D8 3996 aa14.54□□□□□ -0.08
SDC3-202ENST00000339394 IGLV5-45A0A087WSX0 123 aa14.54□□□□□ -0.08
SDC3-202ENST00000339394 IGHV1-58A0A0C4DH39 117 aa14.54□□□□□ -0.08
SDC3-202ENST00000339394 F8VRH5 84 aa14.54□□□□□ -0.08
SDC3-202ENST00000339394 TMA7Q9Y2S6 64 aaKnown RBP14.54□□□□□ -0.08
SDC3-202ENST00000339394 A0A1B0GVY2 172 aa14.53□□□□□ -0.08
SDC3-202ENST00000339394 SYS1-DBNDD2H3BUS1 97 aa14.53□□□□□ -0.08
SDC3-202ENST00000339394 C14orf177Q52M58 125 aa14.53□□□□□ -0.08
SDC3-202ENST00000339394 C11orf86A6NJI1 115 aa14.52□□□□□ -0.08
SDC3-202ENST00000339394 hDV102S1A0JD36 115 aa14.51□□□□□ -0.09
SDC3-202ENST00000339394 APOMO95445 188 aa14.51□□□□□ -0.09
SDC3-202ENST00000339394 C3orf79P0CE67 100 aa14.51□□□□□ -0.09
SDC3-202ENST00000339394 HIGD2BQ4VC39 106 aa14.51□□□□□ -0.09
SDC3-202ENST00000339394 SPATA12Q7Z6I5 190 aa14.51□□□□□ -0.09
SDC3-202ENST00000339394 GVQW2A0A096LPI5 108 aaPredicted RBP14.51□□□□□ -0.09
SDC3-202ENST00000339394 LINC01561Q8N1V8 128 aa14.51□□□□□ -0.09
SDC3-202ENST00000339394 IGLV2-33A0A075B6J2 118 aaPredicted RBP14.5□□□□□ -0.09
SDC3-202ENST00000339394 IGHV3-64A0A075B6Q5 118 aa14.5□□□□□ -0.09
SDC3-202ENST00000339394 ZNF22P17026 224 aaPredicted RBP14.5□□□□□ -0.09
SDC3-202ENST00000339394 KRTAP10-2P60368 255 aa14.5□□□□□ -0.09
SDC3-202ENST00000339394 KRTDAPP60985 99 aa14.5□□□□□ -0.09
SDC3-202ENST00000339394 PMCHL2Q9BQD1 86 aa14.5□□□□□ -0.09
SDC3-202ENST00000339394 DNAH5Q8TE73 4624 aa14.49□□□□□ -0.09
SDC3-202ENST00000339394 FUSP35637 526 aaKnown RBP eCLIP14.48□□□□□ -0.092e-6■■■■□ 20.2
SDC3-202ENST00000339394 PET117Q6UWS5 81 aa14.48□□□□□ -0.09
SDC3-202ENST00000339394 PKHD1P08F94 4074 aa14.48□□□□□ -0.09
SDC3-202ENST00000339394 TMEM170BQ5T4T1 132 aa14.47□□□□□ -0.09
SDC3-202ENST00000339394 ORAOV1Q8WV07 137 aa14.47□□□□□ -0.09
SDC3-202ENST00000339394 LINC00526Q96FQ7 95 aa14.47□□□□□ -0.09
SDC3-202ENST00000339394 H3BRM9 83 aa14.47□□□□□ -0.09
SDC3-202ENST00000339394 ZNF561-AS1K7EIQ3 104 aa14.47□□□□□ -0.09
SDC3-202ENST00000339394 OR10D4PQ8NGN7 298 aa14.47□□□□□ -0.09
SDC3-202ENST00000339394 SMIM1B2RUZ4 78 aa14.46□□□□□ -0.09
SDC3-202ENST00000339394 SLPIP03973 132 aa14.46□□□□□ -0.09
SDC3-202ENST00000339394 SPINK8P0C7L1 97 aa14.46□□□□□ -0.09
SDC3-202ENST00000339394 PLNP26678 52 aa14.46□□□□□ -0.09
SDC3-202ENST00000339394 DPM2O94777 84 aa14.45□□□□□ -0.1
SDC3-202ENST00000339394 SPAG11BQ08648 103 aa14.45□□□□□ -0.1
SDC3-202ENST00000339394 LINC01545Q5VT33 79 aa14.45□□□□□ -0.1
SDC3-202ENST00000339394 NTN5Q8WTR8 489 aaPredicted RBP14.45□□□□□ -0.1
SDC3-202ENST00000339394 PGPEP1Q9NXJ5 209 aa14.45□□□□□ -0.1
SDC3-202ENST00000339394 IGKCP01834 107 aa14.43□□□□□ -0.1
SDC3-202ENST00000339394 EPPK1P58107 5090 aaKnown RBP14.43□□□□□ -0.1
SDC3-202ENST00000339394 KIAA0087Q14695 138 aa14.43□□□□□ -0.1
SDC3-202ENST00000339394 IGLV5-52A0A0A0MRZ9 124 aa14.42□□□□□ -0.1
SDC3-202ENST00000339394 CNBPP62633 177 aaKnown RBP14.42□□□□□ -0.1
SDC3-202ENST00000339394 TOMM7Q9P0U1 55 aa14.42□□□□□ -0.1
SDC3-202ENST00000339394 TMEM223A0PJW6 202 aa14.4□□□□□ -0.1
SDC3-202ENST00000339394 CDPF1Q6NVV7 123 aa14.4□□□□□ -0.1
SDC3-202ENST00000339394 IGLV5-39A0A0G2JS06 123 aa14.39□□□□□ -0.11
SDC3-202ENST00000339394 Q8IZM0 81 aa14.39□□□□□ -0.11
SDC3-202ENST00000339394 C2orf48Q96LS8 159 aa14.39□□□□□ -0.11
SDC3-202ENST00000339394 PRSS2P07478 247 aa14.39□□□□□ -0.11
SDC3-202ENST00000339394 C6orf226Q5I0X4 101 aa14.39□□□□□ -0.11
SDC3-202ENST00000339394 CAMK2N2Q96S95 79 aa14.39□□□□□ -0.11
SDC3-202ENST00000339394 TRAV16A0A0A6YYK6 109 aaPredicted RBP14.38□□□□□ -0.11
SDC3-202ENST00000339394 C20orf202A1L168 122 aa14.38□□□□□ -0.11
SDC3-202ENST00000339394 SYCNQ0VAF6 134 aa14.37□□□□□ -0.11
SDC3-202ENST00000339394 COX7B2Q8TF08 81 aa14.37□□□□□ -0.11
SDC3-202ENST00000339394 LRP1BQ9NZR2 4599 aa14.37□□□□□ -0.11
SDC3-202ENST00000339394 DYNC1H1Q14204 4646 aaKnown RBP14.35□□□□□ -0.11
SDC3-202ENST00000339394 LINC01620Q4KN68 170 aa14.35□□□□□ -0.11
SDC3-202ENST00000339394 C2orf82Q6UX34 121 aa14.35□□□□□ -0.11
SDC3-202ENST00000339394 Q6ZRU5 148 aa14.35□□□□□ -0.11
SDC3-202ENST00000339394 C9orf163Q8N9P6 203 aa14.35□□□□□ -0.11
SDC3-202ENST00000339394 F8WDY8 70 aa14.34□□□□□ -0.11
SDC3-202ENST00000339394 CKS1BP61024 79 aa14.34□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms