RNA–Protein interactions for RNA: ENST00000334448.5

CCDC88C-202, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best)

Gene CCDC88C, Length 1,055 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-202ENST00000334448 SLC25A34Q6PIV7 304 aa10.1□□□□□ -0.79
CCDC88C-202ENST00000334448 A0A087WZ39 114 aa10.09□□□□□ -0.79
CCDC88C-202ENST00000334448 TRAV8-4A0A0B4J246 113 aa10.09□□□□□ -0.79
CCDC88C-202ENST00000334448 IGHV1-58A0A0C4DH39 117 aa10.09□□□□□ -0.79
CCDC88C-202ENST00000334448 LEPROTO15243 131 aa10.09□□□□□ -0.79
CCDC88C-202ENST00000334448 MIAQ16674 131 aa10.09□□□□□ -0.79
CCDC88C-202ENST00000334448 ENHOQ6UWT2 76 aa10.09□□□□□ -0.79
CCDC88C-202ENST00000334448 PLEKHB2Q96CS7 222 aa10.09□□□□□ -0.79
CCDC88C-202ENST00000334448 KLK12Q9UKR0 248 aa10.09□□□□□ -0.79
CCDC88C-202ENST00000334448 SMIM1B2RUZ4 78 aa10.08□□□□□ -0.8
CCDC88C-202ENST00000334448 SIVA1O15304 175 aa10.08□□□□□ -0.8
CCDC88C-202ENST00000334448 IGHV3-30P01768 117 aa10.08□□□□□ -0.8
CCDC88C-202ENST00000334448 IGHV3-33P01772 117 aa10.08□□□□□ -0.8
CCDC88C-202ENST00000334448 IGHV3-30-3P0DP02 117 aa10.08□□□□□ -0.8
CCDC88C-202ENST00000334448 IGHV3-30-5P0DP03 117 aa10.08□□□□□ -0.8
CCDC88C-202ENST00000334448 DDTP30046 118 aa10.08□□□□□ -0.8
CCDC88C-202ENST00000334448 NMUP48645 174 aa10.08□□□□□ -0.8
CCDC88C-202ENST00000334448 CD164L2Q6UWJ8 174 aa10.08□□□□□ -0.8
CCDC88C-202ENST00000334448 C14orf144Q96I85 54 aa10.08□□□□□ -0.8
CCDC88C-202ENST00000334448 VPS13DQ5THJ4 4388 aa10.07□□□□□ -0.8
CCDC88C-202ENST00000334448 PCP2Q8IVA1 136 aa10.07□□□□□ -0.8
CCDC88C-202ENST00000334448 DNAH1Q9P2D7 4330 aa10.07□□□□□ -0.8
CCDC88C-202ENST00000334448 IGKV3OR2-268A0A0C4DH90 116 aa10.06□□□□□ -0.8
CCDC88C-202ENST00000334448 J3QQQ9 107 aa10.06□□□□□ -0.8
CCDC88C-202ENST00000334448 CRPP02741 224 aa10.06□□□□□ -0.8
CCDC88C-202ENST00000334448 TSPEAR-AS2P59090 65 aa10.06□□□□□ -0.8
CCDC88C-202ENST00000334448 CLPSL2Q6UWE3 100 aa10.06□□□□□ -0.8
CCDC88C-202ENST00000334448 C10orf126Q8N4M7 172 aa10.06□□□□□ -0.8
CCDC88C-202ENST00000334448 MUC7Q8TAX7 377 aa10.06□□□□□ -0.8
CCDC88C-202ENST00000334448 CHCHD10Q8WYQ3 142 aaPredicted RBP10.06□□□□□ -0.8
CCDC88C-202ENST00000334448 SPINK8P0C7L1 97 aa10.05□□□□□ -0.8
CCDC88C-202ENST00000334448 WWC2-AS2Q96NR7 200 aa10.05□□□□□ -0.8
CCDC88C-202ENST00000334448 TRAV8-3A0A0A6YYJ7 113 aa10.04□□□□□ -0.8
CCDC88C-202ENST00000334448 IBA57-AS1B1ANH7 110 aa10.04□□□□□ -0.8
CCDC88C-202ENST00000334448 XCL1P47992 114 aa10.04□□□□□ -0.8
CCDC88C-202ENST00000334448 FOXI1Q12951 378 aa10.04□□□□□ -0.8
CCDC88C-202ENST00000334448 ZFAND6Q6FIF0 208 aa10.04□□□□□ -0.8
CCDC88C-202ENST00000334448 KRTAP26-1Q6PEX3 210 aa10.04□□□□□ -0.8
CCDC88C-202ENST00000334448 UBE2WQ96B02 151 aa10.04□□□□□ -0.8
CCDC88C-202ENST00000334448 MYMXA0A1B0GTQ4 84 aa10.03□□□□□ -0.8
CCDC88C-202ENST00000334448 C2orf91Q6ZV80 131 aa10.03□□□□□ -0.8
CCDC88C-202ENST00000334448 Q9H8V8 135 aa10.03□□□□□ -0.8
CCDC88C-202ENST00000334448 HIGD1BQ9P298 99 aa10.03□□□□□ -0.8
CCDC88C-202ENST00000334448 COX7A2LO14548 114 aa10.02□□□□□ -0.81
CCDC88C-202ENST00000334448 LGALS3P17931 250 aaKnown RBP10.02□□□□□ -0.81
CCDC88C-202ENST00000334448 HNRNPA3P51991 378 aaKnown RBP10.02□□□□□ -0.81
CCDC88C-202ENST00000334448 MAPKAPK5-AS1Q8N8E1 139 aa10.02□□□□□ -0.81
CCDC88C-202ENST00000334448 TTTY13Q9BZ97 58 aa10.02□□□□□ -0.81
CCDC88C-202ENST00000334448 PCP4L1A6NKN8 68 aa10.01□□□□□ -0.81
CCDC88C-202ENST00000334448 ZNF815PA8K554 130 aa10.01□□□□□ -0.81
CCDC88C-202ENST00000334448 TP73-AS1Q9UF72 201 aa10.01□□□□□ -0.81
CCDC88C-202ENST00000334448 GAGE12HA6NDE8 117 aa10□□□□□ -0.81
CCDC88C-202ENST00000334448 C5orf38Q86SI9 138 aa10□□□□□ -0.81
CCDC88C-202ENST00000334448 UBE2DNLQ8IWF7 75 aa10□□□□□ -0.81
CCDC88C-202ENST00000334448 TGP01266 2768 aa9.99□□□□□ -0.81
CCDC88C-202ENST00000334448 IGLV10-54A0A075B6I4 117 aa9.99□□□□□ -0.81
CCDC88C-202ENST00000334448 IGHV3-64A0A075B6Q5 118 aa9.99□□□□□ -0.81
CCDC88C-202ENST00000334448 NDUFA1O15239 70 aa9.99□□□□□ -0.81
CCDC88C-202ENST00000334448 SFTA2Q6UW10 78 aa9.99□□□□□ -0.81
CCDC88C-202ENST00000334448 NDUFA12Q9UI09 145 aa9.99□□□□□ -0.81
CCDC88C-202ENST00000334448 Q8IZM0 81 aa9.98□□□□□ -0.81
CCDC88C-202ENST00000334448 COX7B2Q8TF08 81 aa9.98□□□□□ -0.81
CCDC88C-202ENST00000334448 ZNF625Q96I27 306 aaPredicted RBP9.98□□□□□ -0.81
CCDC88C-202ENST00000334448 C1orf43Q9BWL3 253 aa9.98□□□□□ -0.81
CCDC88C-202ENST00000334448 LINC00587B1AMM8 73 aa9.97□□□□□ -0.81
CCDC88C-202ENST00000334448 TTC32Q5I0X7 151 aa9.97□□□□□ -0.81
CCDC88C-202ENST00000334448 RMI2Q96E14 147 aa9.97□□□□□ -0.81
CCDC88C-202ENST00000334448 TENM2Q9NT68 2774 aa9.96□□□□□ -0.81
CCDC88C-202ENST00000334448 C3orf84H3BNL1 204 aa9.96□□□□□ -0.82
CCDC88C-202ENST00000334448 APOMO95445 188 aa9.96□□□□□ -0.82
CCDC88C-202ENST00000334448 HERV-K104P63124 156 aa9.96□□□□□ -0.82
CCDC88C-202ENST00000334448 TIMM17BO60830 172 aa9.95□□□□□ -0.82
CCDC88C-202ENST00000334448 MALP21145 153 aa9.95□□□□□ -0.82
CCDC88C-202ENST00000334448 CXCL5P42830 114 aa9.95□□□□□ -0.82
CCDC88C-202ENST00000334448 KIAA0087Q14695 138 aa9.95□□□□□ -0.82
CCDC88C-202ENST00000334448 KRTAP1-5Q9BYS1 174 aa9.95□□□□□ -0.82
CCDC88C-202ENST00000334448 SPANXB1Q9NS25 103 aaPredicted RBP9.95□□□□□ -0.82
CCDC88C-202ENST00000334448 COX11Q9Y6N1 276 aa9.95□□□□□ -0.82
CCDC88C-202ENST00000334448 ALMS1Q8TCU4 4167 aa9.95□□□□□ -0.82
CCDC88C-202ENST00000334448 LYSTQ99698 3801 aa9.95□□□□□ -0.82
CCDC88C-202ENST00000334448 DNAH6Q9C0G6 4158 aa9.94□□□□□ -0.82
CCDC88C-202ENST00000334448 A0A0J9YXY3 114 aa9.94□□□□□ -0.82
CCDC88C-202ENST00000334448 CTAG1AP78358 180 aa9.94□□□□□ -0.82
CCDC88C-202ENST00000334448 HSD52Q0P140 79 aa9.94□□□□□ -0.82
CCDC88C-202ENST00000334448 TAL2Q16559 108 aa9.94□□□□□ -0.82
CCDC88C-202ENST00000334448 IGKV2D-24A0A075B6R9 120 aa9.93□□□□□ -0.82
CCDC88C-202ENST00000334448 SCGB1D4Q6XE38 83 aa9.93□□□□□ -0.82
CCDC88C-202ENST00000334448 ORAOV1Q8WV07 137 aa9.93□□□□□ -0.82
CCDC88C-202ENST00000334448 NBDYA0A0U1RRE5 68 aa9.92□□□□□ -0.82
CCDC88C-202ENST00000334448 CASC10Q5T4H9 136 aa9.92□□□□□ -0.82
CCDC88C-202ENST00000334448 LITAFQ99732 161 aa9.92□□□□□ -0.82
CCDC88C-202ENST00000334448 F8WDY8 70 aa9.91□□□□□ -0.82
CCDC88C-202ENST00000334448 PRSS2P07478 247 aa9.91□□□□□ -0.82
CCDC88C-202ENST00000334448 Q9HAA7 133 aa9.91□□□□□ -0.82
CCDC88C-202ENST00000334448 GVQW2A0A096LPI5 108 aaPredicted RBP9.9□□□□□ -0.82
CCDC88C-202ENST00000334448 TMEM238C9JI98 176 aa9.9□□□□□ -0.82
CCDC88C-202ENST00000334448 M0R143 59 aa9.9□□□□□ -0.82
CCDC88C-202ENST00000334448 SPAG11BQ08648 103 aa9.9□□□□□ -0.82
CCDC88C-202ENST00000334448 C6orf226Q5I0X4 101 aa9.9□□□□□ -0.82
CCDC88C-202ENST00000334448 Q6ZVH6 145 aa9.9□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 187.8 ms