RNA–Protein interactions for RNA: ENST00000330494.11

CHD3-201, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CHD3, Length 7,328 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-201ENST00000330494 IGKV2D-28P01615 120 aa7.48□□□□□ -1.21
CHD3-201ENST00000330494 PTPRBP23467 1997 aa7.48□□□□□ -1.21
CHD3-201ENST00000330494 UFSP1Q6NVU6 142 aa7.48□□□□□ -1.21
CHD3-201ENST00000330494 BPY2O14599 106 aa7.47□□□□□ -1.21
CHD3-201ENST00000330494 LY6G6CO95867 125 aa7.47□□□□□ -1.21
CHD3-201ENST00000330494 IGKV4-1P06312 121 aa7.47□□□□□ -1.21
CHD3-201ENST00000330494 MUC4Q99102 2169 aa7.47□□□□□ -1.21
CHD3-201ENST00000330494 NAV2Q8IVL1 2488 aa7.47□□□□□ -1.21
CHD3-201ENST00000330494 A6NED7 52 aa7.47□□□□□ -1.21
CHD3-201ENST00000330494 TSHBP01222 138 aa7.47□□□□□ -1.21
CHD3-201ENST00000330494 NRACQ8N912 160 aa7.47□□□□□ -1.21
CHD3-201ENST00000330494 SERP2Q8N6R1 65 aa7.46□□□□□ -1.21
CHD3-201ENST00000330494 IL17DQ8TAD2 202 aa7.46□□□□□ -1.22
CHD3-201ENST00000330494 TRIAP1O43715 76 aa7.46□□□□□ -1.22
CHD3-201ENST00000330494 MYO18BQ8IUG5 2567 aa7.46□□□□□ -1.22
CHD3-201ENST00000330494 IGHV4-30-4P0DP06 118 aa7.46□□□□□ -1.22
CHD3-201ENST00000330494 COX7CP15954 63 aa7.45□□□□□ -1.22
CHD3-201ENST00000330494 PPDPFQ9H3Y8 114 aa7.45□□□□□ -1.22
CHD3-201ENST00000330494 TRBV6-4A0A1B0GX49 114 aa7.45□□□□□ -1.22
CHD3-201ENST00000330494 RPL37AP8A6NKH3 93 aa7.45□□□□□ -1.22
CHD3-201ENST00000330494 BRI3O95415 125 aa7.45□□□□□ -1.22
CHD3-201ENST00000330494 C14orf177Q52M58 125 aa7.45□□□□□ -1.22
CHD3-201ENST00000330494 TRAV10A0A0B4J240 114 aa7.44□□□□□ -1.22
CHD3-201ENST00000330494 U3KQK5 164 aa7.44□□□□□ -1.22
CHD3-201ENST00000330494 PRR4Q16378 134 aa7.44□□□□□ -1.22
CHD3-201ENST00000330494 LINC00308Q8TCZ7 52 aa7.44□□□□□ -1.22
CHD3-201ENST00000330494 CRIP2P52943 208 aaPredicted RBP7.44□□□□□ -1.22
CHD3-201ENST00000330494 KLLNB2CW77 178 aa7.43□□□□□ -1.22
CHD3-201ENST00000330494 USP17L23D6RBM5 183 aa7.43□□□□□ -1.22
CHD3-201ENST00000330494 H7C423 109 aa7.42□□□□□ -1.22
CHD3-201ENST00000330494 PDE6GP18545 87 aa7.42□□□□□ -1.22
CHD3-201ENST00000330494 ATP5EP56381 51 aaPredicted RBP7.42□□□□□ -1.22
CHD3-201ENST00000330494 YPEL4Q96NS1 127 aa7.42□□□□□ -1.22
CHD3-201ENST00000330494 UBE2D4Q9Y2X8 147 aa7.42□□□□□ -1.22
CHD3-201ENST00000330494 C2CD3Q4AC94 2353 aa7.42□□□□□ -1.22
CHD3-201ENST00000330494 C2orf91Q6ZV80 131 aa7.42□□□□□ -1.22
CHD3-201ENST00000330494 TRBV27A0A0K0K1C4 114 aa7.42□□□□□ -1.22
CHD3-201ENST00000330494 SYCNQ0VAF6 134 aa7.42□□□□□ -1.22
CHD3-201ENST00000330494 ATP5EP2Q5VTU8 51 aa7.41□□□□□ -1.22
CHD3-201ENST00000330494 LINC00959A0A1B0GUT2 108 aa7.41□□□□□ -1.22
CHD3-201ENST00000330494 C6orf99Q4VX62 202 aa7.41□□□□□ -1.22
CHD3-201ENST00000330494 TLN1Q9Y490 2541 aaKnown RBP7.41□□□□□ -1.22
CHD3-201ENST00000330494 WFDC10BQ8IUB3 73 aa7.41□□□□□ -1.22
CHD3-201ENST00000330494 SOSTDC1Q6X4U4 206 aa7.4□□□□□ -1.22
CHD3-201ENST00000330494 C9orf85Q96MD7 179 aa7.4□□□□□ -1.22
CHD3-201ENST00000330494 PMAIP1Q13794 54 aa7.4□□□□□ -1.22
CHD3-201ENST00000330494 COL27A1Q8IZC6 1860 aaPredicted RBP7.4□□□□□ -1.22
CHD3-201ENST00000330494 ODF3L2Q3SX64 289 aa7.4□□□□□ -1.22
CHD3-201ENST00000330494 C3orf84H3BNL1 204 aa7.4□□□□□ -1.23
CHD3-201ENST00000330494 IMUPQ9GZP8 106 aa7.4□□□□□ -1.23
CHD3-201ENST00000330494 TRBV30A0A0K0K1B3 111 aa7.4□□□□□ -1.23
CHD3-201ENST00000330494 NDUFC1O43677 76 aa7.4□□□□□ -1.23
CHD3-201ENST00000330494 C1orf158Q8N1D5 194 aa7.4□□□□□ -1.23
CHD3-201ENST00000330494 PIEZO1Q92508 2521 aa7.4□□□□□ -1.23
CHD3-201ENST00000330494 IBA57-AS1B1ANH7 110 aa7.39□□□□□ -1.23
CHD3-201ENST00000330494 CASC2Q6XLA1 102 aa7.39□□□□□ -1.23
CHD3-201ENST00000330494 SPINK6Q6UWN8 80 aa7.39□□□□□ -1.23
CHD3-201ENST00000330494 LELP1Q5T871 98 aa7.38□□□□□ -1.23
CHD3-201ENST00000330494 LOC107984640A0A0U1RRK4 108 aa7.38□□□□□ -1.23
CHD3-201ENST00000330494 UBE2D1P51668 147 aa7.38□□□□□ -1.23
CHD3-201ENST00000330494 C9orf116Q5BN46 136 aaPredicted RBP7.38□□□□□ -1.23
CHD3-201ENST00000330494 SMIM26A0A096LP01 95 aa7.38□□□□□ -1.23
CHD3-201ENST00000330494 ZFYVE26Q68DK2 2539 aa7.38□□□□□ -1.23
CHD3-201ENST00000330494 CD164L2Q6UWJ8 174 aa7.38□□□□□ -1.23
CHD3-201ENST00000330494 CSDC2Q9Y534 153 aaKnown RBP7.38□□□□□ -1.23
CHD3-201ENST00000330494 TRBV6-5A0A0K0K1A5 114 aa7.37□□□□□ -1.23
CHD3-201ENST00000330494 PCSK5Q92824 1860 aa7.37□□□□□ -1.23
CHD3-201ENST00000330494 LRRK2Q5S007 2527 aa7.37□□□□□ -1.23
CHD3-201ENST00000330494 COX6A2Q02221 97 aa7.36□□□□□ -1.23
CHD3-201ENST00000330494 IGLV9-49A0A0B4J1Y8 123 aa7.36□□□□□ -1.23
CHD3-201ENST00000330494 PRR15LQ9BU68 103 aa7.36□□□□□ -1.23
CHD3-201ENST00000330494 IGLV4-69A0A075B6H9 119 aa7.36□□□□□ -1.23
CHD3-201ENST00000330494 POLR2KP53803 58 aaKnown RBP7.36□□□□□ -1.23
CHD3-201ENST00000330494 SMIM11BQ8TCY0 68 aa7.36□□□□□ -1.23
CHD3-201ENST00000330494 TLN2Q9Y4G6 2542 aa7.36□□□□□ -1.23
CHD3-201ENST00000330494 KIR2DL5BQ8NHK3 375 aa7.35□□□□□ -1.23
CHD3-201ENST00000330494 POM121L12Q8N7R1 296 aa7.35□□□□□ -1.23
CHD3-201ENST00000330494 FAM30AQ9NZY2 134 aa7.35□□□□□ -1.23
CHD3-201ENST00000330494 SERP1Q9Y6X1 66 aa7.35□□□□□ -1.23
CHD3-201ENST00000330494 MRGPRG-AS1Q2M3A8 158 aa7.35□□□□□ -1.23
CHD3-201ENST00000330494 FAM19A3Q7Z5A8 133 aa7.35□□□□□ -1.23
CHD3-201ENST00000330494 PYGO1Q9Y3Y4 419 aa7.35□□□□□ -1.23
CHD3-201ENST00000330494 Q6ZTC4 211 aa7.35□□□□□ -1.23
CHD3-201ENST00000330494 K7ERS5 55 aa7.34□□□□□ -1.23
CHD3-201ENST00000330494 UBE2D3P61077 147 aa7.34□□□□□ -1.23
CHD3-201ENST00000330494 UBE2D2P62837 147 aa7.34□□□□□ -1.23
CHD3-201ENST00000330494 PRR3P79522 188 aaKnown RBP7.34□□□□□ -1.23
CHD3-201ENST00000330494 CDC42SE2Q9NRR3 84 aa7.34□□□□□ -1.23
CHD3-201ENST00000330494 IGLV4-60A0A075B6I1 120 aa7.34□□□□□ -1.23
CHD3-201ENST00000330494 Q6ZSN1 163 aa7.34□□□□□ -1.23
CHD3-201ENST00000330494 Q6Q795 121 aa7.34□□□□□ -1.23
CHD3-201ENST00000330494 FN1P02751 2386 aaKnown RBP7.34□□□□□ -1.24
CHD3-201ENST00000330494 C7orf33Q8WU49 177 aa7.33□□□□□ -1.24
CHD3-201ENST00000330494 ANKRD11Q6UB99 2663 aaPredicted RBP7.33□□□□□ -1.24
CHD3-201ENST00000330494 CCKP06307 115 aa7.33□□□□□ -1.24
CHD3-201ENST00000330494 CYSRT1A8MQ03 144 aa7.33□□□□□ -1.24
CHD3-201ENST00000330494 IGLV1-51P01701 117 aa7.33□□□□□ -1.24
CHD3-201ENST00000330494 MYO9AB2RTY4 2548 aa7.33□□□□□ -1.24
CHD3-201ENST00000330494 UNQ6190/PRO20217Q6UXQ8 127 aa7.33□□□□□ -1.24
CHD3-201ENST00000330494 Q6ZQY7 126 aa7.33□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 72.7 ms