RNA–Protein interactions for RNA: ENST00000318988.10

CTDNEP1-201, Transcript of CTD nuclear envelope phosphatase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CTDNEP1, Length 1,549 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1-201ENST00000318988 C1orf43Q9BWL3 253 aa18.46■□□□□ 0.55
CTDNEP1-201ENST00000318988 RMI2Q96E14 147 aa18.45■□□□□ 0.54
CTDNEP1-201ENST00000318988 COX6A2Q02221 97 aa18.44■□□□□ 0.54
CTDNEP1-201ENST00000318988 IGKV2D-24A0A075B6R9 120 aa18.44■□□□□ 0.54
CTDNEP1-201ENST00000318988 CD164L2Q6UWJ8 174 aa18.44■□□□□ 0.54
CTDNEP1-201ENST00000318988 H3BRM9 83 aa18.43■□□□□ 0.54
CTDNEP1-201ENST00000318988 ZNF22P17026 224 aaPredicted RBP18.42■□□□□ 0.54
CTDNEP1-201ENST00000318988 LYSTQ99698 3801 aa18.42■□□□□ 0.54
CTDNEP1-201ENST00000318988 GAGE12HA6NDE8 117 aa18.41■□□□□ 0.54
CTDNEP1-201ENST00000318988 HSBP1L1C9JCN9 74 aa18.41■□□□□ 0.54
CTDNEP1-201ENST00000318988 SMIM6P0DI80 62 aa18.41■□□□□ 0.54
CTDNEP1-201ENST00000318988 KRTAP1-5Q9BYS1 174 aa18.41■□□□□ 0.54
CTDNEP1-201ENST00000318988 CDKN2A-AS1Q9UH64 79 aa18.41■□□□□ 0.54
CTDNEP1-201ENST00000318988 IGLV5-45A0A087WSX0 123 aa18.39■□□□□ 0.54
CTDNEP1-201ENST00000318988 IGHV3OR16-9A0A0B4J2B5 98 aa18.39■□□□□ 0.53
CTDNEP1-201ENST00000318988 M0R2N4 97 aa18.39■□□□□ 0.53
CTDNEP1-201ENST00000318988 HERVK_113P61574 105 aa18.39■□□□□ 0.53
CTDNEP1-201ENST00000318988 COX7A2LO14548 114 aa18.38■□□□□ 0.53
CTDNEP1-201ENST00000318988 C5orf38Q86SI9 138 aa18.38■□□□□ 0.53
CTDNEP1-201ENST00000318988 COX11Q9Y6N1 276 aa18.37■□□□□ 0.53
CTDNEP1-201ENST00000318988 FOXI1Q12951 378 aa18.36■□□□□ 0.53
CTDNEP1-201ENST00000318988 TM2D2Q9BX73 214 aa18.36■□□□□ 0.53
CTDNEP1-201ENST00000318988 VPS13DQ5THJ4 4388 aa18.36■□□□□ 0.53
CTDNEP1-201ENST00000318988 hDV102S1A0JD36 115 aa18.35■□□□□ 0.53
CTDNEP1-201ENST00000318988 MALP21145 153 aa18.35■□□□□ 0.53
CTDNEP1-201ENST00000318988 STPG4Q8N801 248 aa18.35■□□□□ 0.53
CTDNEP1-201ENST00000318988 VAMP8Q9BV40 100 aa18.35■□□□□ 0.53
CTDNEP1-201ENST00000318988 A0A087WZ39 114 aa18.34■□□□□ 0.53
CTDNEP1-201ENST00000318988 S100A12P80511 92 aa18.34■□□□□ 0.53
CTDNEP1-201ENST00000318988 TMEM223A0PJW6 202 aa18.33■□□□□ 0.53
CTDNEP1-201ENST00000318988 SPINK8P0C7L1 97 aa18.33■□□□□ 0.53
CTDNEP1-201ENST00000318988 DNAH1Q9P2D7 4330 aa18.31■□□□□ 0.52
CTDNEP1-201ENST00000318988 MAJINQ3KP22 176 aa18.31■□□□□ 0.52
CTDNEP1-201ENST00000318988 CDPF1Q6NVV7 123 aa18.31■□□□□ 0.52
CTDNEP1-201ENST00000318988 LINC01561Q8N1V8 128 aa18.31■□□□□ 0.52
CTDNEP1-201ENST00000318988 KRTAP26-1Q6PEX3 210 aa18.3■□□□□ 0.52
CTDNEP1-201ENST00000318988 PAM16Q9Y3D7 125 aa18.3■□□□□ 0.52
CTDNEP1-201ENST00000318988 ALMS1Q8TCU4 4167 aa18.29■□□□□ 0.52
CTDNEP1-201ENST00000318988 IGHV3-64A0A075B6Q5 118 aa18.29■□□□□ 0.52
CTDNEP1-201ENST00000318988 PSCAO43653 123 aa18.29■□□□□ 0.52
CTDNEP1-201ENST00000318988 APOMO95445 188 aa18.29■□□□□ 0.52
CTDNEP1-201ENST00000318988 Q6ZR54 194 aa18.28■□□□□ 0.52
CTDNEP1-201ENST00000318988 SMIM1B2RUZ4 78 aa18.28■□□□□ 0.52
CTDNEP1-201ENST00000318988 IGHV1-58A0A0C4DH39 117 aa18.27■□□□□ 0.51
CTDNEP1-201ENST00000318988 C12orf57Q99622 126 aa18.27■□□□□ 0.51
CTDNEP1-201ENST00000318988 E9PLD3 99 aa18.26■□□□□ 0.51
CTDNEP1-201ENST00000318988 SPATA45Q537H7 98 aa18.26■□□□□ 0.51
CTDNEP1-201ENST00000318988 ANKRD39Q53RE8 183 aa18.26■□□□□ 0.51
CTDNEP1-201ENST00000318988 CFAP161Q6P656 301 aa18.24■□□□□ 0.51
CTDNEP1-201ENST00000318988 C6orf223Q8N319 242 aa18.24■□□□□ 0.51
CTDNEP1-201ENST00000318988 PLEKHB2Q96CS7 222 aa18.24■□□□□ 0.51
CTDNEP1-201ENST00000318988 LEPROTO15243 131 aa18.23■□□□□ 0.51
CTDNEP1-201ENST00000318988 NMUP48645 174 aa18.23■□□□□ 0.51
CTDNEP1-201ENST00000318988 ORAOV1Q8WV07 137 aa18.23■□□□□ 0.51
CTDNEP1-201ENST00000318988 IGLV5-39A0A0G2JS06 123 aa18.23■□□□□ 0.51
CTDNEP1-201ENST00000318988 LCE6AA0A183 80 aa18.23■□□□□ 0.51
CTDNEP1-201ENST00000318988 TOMM7Q9P0U1 55 aa18.23■□□□□ 0.51
CTDNEP1-201ENST00000318988 PRSS2P07478 247 aa18.22■□□□□ 0.51
CTDNEP1-201ENST00000318988 C1orf134Q5TEV5 83 aa18.22■□□□□ 0.51
CTDNEP1-201ENST00000318988 LINC00518Q8N0U6 118 aa18.21■□□□□ 0.51
CTDNEP1-201ENST00000318988 LGALS3P17931 250 aaKnown RBP18.2■□□□□ 0.5
CTDNEP1-201ENST00000318988 J3QQQ9 107 aa18.19■□□□□ 0.5
CTDNEP1-201ENST00000318988 COX7B2Q8TF08 81 aa18.19■□□□□ 0.5
CTDNEP1-201ENST00000318988 IGKV2D-26A0A0A0MRZ7 120 aa18.18■□□□□ 0.5
CTDNEP1-201ENST00000318988 C6orf226Q5I0X4 101 aa18.18■□□□□ 0.5
CTDNEP1-201ENST00000318988 MAPKAPK5-AS1Q8N8E1 139 aa18.18■□□□□ 0.5
CTDNEP1-201ENST00000318988 SPAG11BQ08648 103 aa18.16■□□□□ 0.5
CTDNEP1-201ENST00000318988 Q8IZM0 81 aa18.16■□□□□ 0.5
CTDNEP1-201ENST00000318988 USP17L23D6RBM5 183 aa18.15■□□□□ 0.5
CTDNEP1-201ENST00000318988 ZNF561-AS1K7EIQ3 104 aa18.15■□□□□ 0.5
CTDNEP1-201ENST00000318988 Q6ZRN7 208 aaPredicted RBP18.15■□□□□ 0.5
CTDNEP1-201ENST00000318988 C15orf56Q8N910 161 aa18.14■□□□□ 0.49
CTDNEP1-201ENST00000318988 TSPEAR-AS2P59090 65 aa18.13■□□□□ 0.49
CTDNEP1-201ENST00000318988 HIGD2BQ4VC39 106 aa18.13■□□□□ 0.49
CTDNEP1-201ENST00000318988 LECT2O14960 151 aa18.13■□□□□ 0.49
CTDNEP1-201ENST00000318988 DNAH6Q9C0G6 4158 aa18.12■□□□□ 0.49
CTDNEP1-201ENST00000318988 CKS1BP61024 79 aa18.12■□□□□ 0.49
CTDNEP1-201ENST00000318988 NDUFA12Q9UI09 145 aa18.12■□□□□ 0.49
CTDNEP1-201ENST00000318988 PCP2Q8IVA1 136 aa18.11■□□□□ 0.49
CTDNEP1-201ENST00000318988 C14orf144Q96I85 54 aa18.11■□□□□ 0.49
CTDNEP1-201ENST00000318988 ZNF815PA8K554 130 aa18.1■□□□□ 0.49
CTDNEP1-201ENST00000318988 COX8AP10176 69 aa18.1■□□□□ 0.49
CTDNEP1-201ENST00000318988 KMT2AQ03164 3969 aa18.1■□□□□ 0.49
CTDNEP1-201ENST00000318988 GVQW2A0A096LPI5 108 aaPredicted RBP18.09■□□□□ 0.49
CTDNEP1-201ENST00000318988 MYMXA0A1B0GTQ4 84 aa18.09■□□□□ 0.49
CTDNEP1-201ENST00000318988 CXCL5P42830 114 aa18.09■□□□□ 0.49
CTDNEP1-201ENST00000318988 KIAA0087Q14695 138 aa18.09■□□□□ 0.49
CTDNEP1-201ENST00000318988 C14orf177Q52M58 125 aa18.09■□□□□ 0.49
CTDNEP1-201ENST00000318988 SFTA2Q6UW10 78 aa18.08■□□□□ 0.49
CTDNEP1-201ENST00000318988 TTTY13Q9BZ97 58 aa18.08■□□□□ 0.49
CTDNEP1-201ENST00000318988 LINC00526Q96FQ7 95 aa18.08■□□□□ 0.48
CTDNEP1-201ENST00000318988 NDUFA1O15239 70 aa18.07■□□□□ 0.48
CTDNEP1-201ENST00000318988 SLC25A34Q6PIV7 304 aa18.07■□□□□ 0.48
CTDNEP1-201ENST00000318988 NTN5Q8WTR8 489 aaPredicted RBP18.05■□□□□ 0.48
CTDNEP1-201ENST00000318988 PRO1933Q9H354 126 aa18.05■□□□□ 0.48
CTDNEP1-201ENST00000318988 C2orf82Q6UX34 121 aa18.04■□□□□ 0.48
CTDNEP1-201ENST00000318988 C2orf48Q96LS8 159 aa18.04■□□□□ 0.48
CTDNEP1-201ENST00000318988 CAMK2N2Q96S95 79 aa18.04■□□□□ 0.48
CTDNEP1-201ENST00000318988 F8WDY8 70 aa18.03■□□□□ 0.48
CTDNEP1-201ENST00000318988 HERV-K104P63124 156 aa18.03■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 121.1 ms