RNA–Protein interactions for RNA: ENST00000305481.10

USP47-201, Transcript of ubiquitin specific peptidase 47, humanhuman

TSL 1 (best)

Gene USP47, Length 3,577 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-201ENST00000305481 GYPEP15421 78 aa4.57□□□□□ -1.68
USP47-201ENST00000305481 TRAV13-1A0A0B4J241 112 aa4.57□□□□□ -1.68
USP47-201ENST00000305481 A0A0J9YXY3 114 aa4.57□□□□□ -1.68
USP47-201ENST00000305481 SAMD5Q5TGI4 173 aa4.57□□□□□ -1.68
USP47-201ENST00000305481 TMEM101Q96IK0 257 aa4.57□□□□□ -1.68
USP47-201ENST00000305481 LITAFQ99732 161 aa4.57□□□□□ -1.68
USP47-201ENST00000305481 IGLV4-60A0A075B6I1 120 aa4.57□□□□□ -1.68
USP47-201ENST00000305481 H7C423 109 aa4.57□□□□□ -1.68
USP47-201ENST00000305481 UBE2L6O14933 153 aa4.57□□□□□ -1.68
USP47-201ENST00000305481 GAGE6Q13070 117 aa4.57□□□□□ -1.68
USP47-201ENST00000305481 PRO0255Q9UI72 69 aa4.57□□□□□ -1.68
USP47-201ENST00000305481 IGLL5B9A064 214 aa4.56□□□□□ -1.68
USP47-201ENST00000305481 COL6A5A8TX70 2615 aa4.56□□□□□ -1.68
USP47-201ENST00000305481 F5H768 121 aa4.56□□□□□ -1.68
USP47-201ENST00000305481 SCGB1A1P11684 91 aa4.56□□□□□ -1.68
USP47-201ENST00000305481 MIFP14174 115 aa4.56□□□□□ -1.68
USP47-201ENST00000305481 HERVK_113P63121 156 aa4.56□□□□□ -1.68
USP47-201ENST00000305481 C3orf56Q8N813 242 aa4.56□□□□□ -1.68
USP47-201ENST00000305481 ATP6V0E2Q8NHE4 81 aa4.56□□□□□ -1.68
USP47-201ENST00000305481 IGLV5-39A0A0G2JS06 123 aa4.55□□□□□ -1.68
USP47-201ENST00000305481 ZFAND6Q6FIF0 208 aa4.55□□□□□ -1.68
USP47-201ENST00000305481 NDUFA12Q9UI09 145 aa4.55□□□□□ -1.68
USP47-201ENST00000305481 A0A096LPF7 62 aa4.55□□□□□ -1.68
USP47-201ENST00000305481 GAGE10A6NGK3 116 aa4.55□□□□□ -1.68
USP47-201ENST00000305481 K7EP34 96 aa4.55□□□□□ -1.68
USP47-201ENST00000305481 EIF4EBP3O60516 100 aaPredicted RBP4.55□□□□□ -1.68
USP47-201ENST00000305481 EGFEM1PQ0D2K5 195 aa4.55□□□□□ -1.68
USP47-201ENST00000305481 ADAMTSL4-AS1Q5T5F5 129 aa4.55□□□□□ -1.68
USP47-201ENST00000305481 CHCHD5Q9BSY4 110 aa4.55□□□□□ -1.68
USP47-201ENST00000305481 SMIM1B2RUZ4 78 aa4.55□□□□□ -1.68
USP47-201ENST00000305481 PAX4O43316 350 aa4.55□□□□□ -1.68
USP47-201ENST00000305481 CFC1BP0CG36 223 aa4.54□□□□□ -1.68
USP47-201ENST00000305481 CFC1P0CG37 223 aa4.54□□□□□ -1.68
USP47-201ENST00000305481 DAD1P61803 113 aa4.54□□□□□ -1.68
USP47-201ENST00000305481 FABP2P12104 132 aa4.54□□□□□ -1.68
USP47-201ENST00000305481 MUSTN1Q8IVN3 82 aa4.54□□□□□ -1.68
USP47-201ENST00000305481 SPCS1Q9Y6A9 102 aa4.54□□□□□ -1.68
USP47-201ENST00000305481 TENM3Q9P273 2699 aa4.53□□□□□ -1.68
USP47-201ENST00000305481 TEX48A0A1B0GUV7 120 aa4.53□□□□□ -1.68
USP47-201ENST00000305481 GAGE12HA6NDE8 117 aa4.53□□□□□ -1.68
USP47-201ENST00000305481 APOMO95445 188 aa4.53□□□□□ -1.68
USP47-201ENST00000305481 RETNQ9HD89 108 aa4.53□□□□□ -1.68
USP47-201ENST00000305481 NOTCH1P46531 2555 aa4.53□□□□□ -1.68
USP47-201ENST00000305481 IGKV3OR2-268A0A0C4DH90 116 aa4.53□□□□□ -1.68
USP47-201ENST00000305481 NDUFA1O15239 70 aa4.53□□□□□ -1.68
USP47-201ENST00000305481 ATP5G1P05496 136 aa4.53□□□□□ -1.68
USP47-201ENST00000305481 SPART-AS1P0CW21 52 aa4.53□□□□□ -1.68
USP47-201ENST00000305481 GTF2H5Q6ZYL4 71 aa4.53□□□□□ -1.68
USP47-201ENST00000305481 ZNF625Q96I27 306 aaPredicted RBP4.52□□□□□ -1.69
USP47-201ENST00000305481 IGHV3OR16-9A0A0B4J2B5 98 aa4.52□□□□□ -1.69
USP47-201ENST00000305481 A0A1B0GUV1 79 aa4.52□□□□□ -1.69
USP47-201ENST00000305481 Q8N3U1 123 aa4.52□□□□□ -1.69
USP47-201ENST00000305481 SPANXDQ9BXN6 97 aa4.52□□□□□ -1.69
USP47-201ENST00000305481 Q9H8V8 135 aa4.52□□□□□ -1.69
USP47-201ENST00000305481 SPANXCQ9NY87 97 aa4.52□□□□□ -1.69
USP47-201ENST00000305481 NBEAL1Q6ZS30 2694 aa4.52□□□□□ -1.69
USP47-201ENST00000305481 LINC00959A0A1B0GUT2 108 aa4.52□□□□□ -1.69
USP47-201ENST00000305481 TMEM262E9PQX1 116 aa4.52□□□□□ -1.69
USP47-201ENST00000305481 RPL24P83731 157 aaKnown RBP4.52□□□□□ -1.69
USP47-201ENST00000305481 MIAQ16674 131 aa4.52□□□□□ -1.69
USP47-201ENST00000305481 DAND5Q8N907 189 aa4.52□□□□□ -1.69
USP47-201ENST00000305481 PRSS2P07478 247 aa4.51□□□□□ -1.69
USP47-201ENST00000305481 HTN3P15516 51 aa4.51□□□□□ -1.69
USP47-201ENST00000305481 SFTA2Q6UW10 78 aa4.51□□□□□ -1.69
USP47-201ENST00000305481 TIMM17BO60830 172 aa4.51□□□□□ -1.69
USP47-201ENST00000305481 PRO1854Q9UHT4 67 aa4.51□□□□□ -1.69
USP47-201ENST00000305481 NPC2P61916 151 aa4.5□□□□□ -1.69
USP47-201ENST00000305481 H3BMG7 143 aa4.5□□□□□ -1.69
USP47-201ENST00000305481 MRPL23Q16540 153 aaKnown RBP4.5□□□□□ -1.69
USP47-201ENST00000305481 A0A087WZ39 114 aa4.5□□□□□ -1.69
USP47-201ENST00000305481 A0A0B4J2C4 111 aa4.5□□□□□ -1.69
USP47-201ENST00000305481 IGHV3-33P01772 117 aa4.5□□□□□ -1.69
USP47-201ENST00000305481 CLPSL2Q6UWE3 100 aa4.5□□□□□ -1.69
USP47-201ENST00000305481 C5orf38Q86SI9 138 aa4.49□□□□□ -1.69
USP47-201ENST00000305481 ERG28Q9UKR5 140 aa4.49□□□□□ -1.69
USP47-201ENST00000305481 A0A0U1RRA0 63 aa4.49□□□□□ -1.69
USP47-201ENST00000305481 C5orf47Q569G3 176 aa4.49□□□□□ -1.69
USP47-201ENST00000305481 SOSTDC1Q6X4U4 206 aa4.49□□□□□ -1.69
USP47-201ENST00000305481 LINC00269Q8N2A0 174 aa4.49□□□□□ -1.69
USP47-201ENST00000305481 COX7B2Q8TF08 81 aa4.49□□□□□ -1.69
USP47-201ENST00000305481 LOC107984156A0A0G2JMH3 177 aa4.48□□□□□ -1.69
USP47-201ENST00000305481 CCDC179H3BU77 68 aa4.48□□□□□ -1.69
USP47-201ENST00000305481 XCL1P47992 114 aa4.48□□□□□ -1.69
USP47-201ENST00000305481 ARL17AQ8IVW1 177 aa4.48□□□□□ -1.69
USP47-201ENST00000305481 ICOSQ9Y6W8 199 aa4.48□□□□□ -1.69
USP47-201ENST00000305481 TRAV16A0A0A6YYK6 109 aaPredicted RBP4.48□□□□□ -1.69
USP47-201ENST00000305481 NHLRC4P0CG21 123 aaPredicted RBP4.48□□□□□ -1.69
USP47-201ENST00000305481 LINC00308Q8TCZ7 52 aa4.48□□□□□ -1.69
USP47-201ENST00000305481 PRO0461Q9UI25 63 aa4.48□□□□□ -1.69
USP47-201ENST00000305481 LOC107984640A0A0U1RRK4 108 aa4.48□□□□□ -1.69
USP47-201ENST00000305481 PRB2P02812 416 aaPredicted RBP4.48□□□□□ -1.69
USP47-201ENST00000305481 MT-ATP8P03928 68 aa4.48□□□□□ -1.69
USP47-201ENST00000305481 Q6ZTC4 211 aa4.48□□□□□ -1.69
USP47-201ENST00000305481 TOMM7Q9P0U1 55 aa4.48□□□□□ -1.69
USP47-201ENST00000305481 H7C2G1 150 aa4.47□□□□□ -1.69
USP47-201ENST00000305481 IFITM1P13164 125 aa4.47□□□□□ -1.69
USP47-201ENST00000305481 CIRBPQ14011 172 aaKnown RBP4.47□□□□□ -1.69
USP47-201ENST00000305481 WFDC2Q14508 124 aa4.47□□□□□ -1.69
USP47-201ENST00000305481 SS18Q15532 418 aa4.47□□□□□ -1.69
USP47-201ENST00000305481 LELP1Q5T871 98 aa4.47□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms