RNA–Protein interactions for RNA: ENST00000303354.10

SCN9A-201, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 9,786 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-201ENST00000303354 REG3GQ6UW15 175 aa5.6□□□□□ -1.51
SCN9A-201ENST00000303354 FHL2Q14192 279 aa5.6□□□□□ -1.51
SCN9A-201ENST00000303354 P0C879 139 aa5.6□□□□□ -1.51
SCN9A-201ENST00000303354 SPANXDQ9BXN6 97 aa5.59□□□□□ -1.51
SCN9A-201ENST00000303354 H7C423 109 aa5.59□□□□□ -1.51
SCN9A-201ENST00000303354 IGLV1-51P01701 117 aa5.59□□□□□ -1.51
SCN9A-201ENST00000303354 ALPK3Q96L96 1907 aa5.59□□□□□ -1.51
SCN9A-201ENST00000303354 KIAA1549Q9HCM3 1950 aa5.59□□□□□ -1.51
SCN9A-201ENST00000303354 IBA57-AS1B1ANH7 110 aa5.59□□□□□ -1.51
SCN9A-201ENST00000303354 PCOTHQ58A44 107 aa5.59□□□□□ -1.51
SCN9A-201ENST00000303354 LINC00574Q9H8X3 128 aa5.59□□□□□ -1.51
SCN9A-201ENST00000303354 FHL3Q13643 280 aa5.59□□□□□ -1.51
SCN9A-201ENST00000303354 LYPD5Q6UWN5 251 aa5.59□□□□□ -1.52
SCN9A-201ENST00000303354 CDC42SE2Q9NRR3 84 aa5.58□□□□□ -1.52
SCN9A-201ENST00000303354 PTPRQQ9UMZ3 2332 aa5.58□□□□□ -1.52
SCN9A-201ENST00000303354 DSCAMO60469 2012 aa5.58□□□□□ -1.52
SCN9A-201ENST00000303354 RAI1Q7Z5J4 1906 aaPredicted RBP5.58□□□□□ -1.52
SCN9A-201ENST00000303354 A0A1B0GXF2 115 aa5.58□□□□□ -1.52
SCN9A-201ENST00000303354 SPACA4Q8TDM5 124 aa5.58□□□□□ -1.52
SCN9A-201ENST00000303354 CEP192Q8TEP8 1941 aa5.58□□□□□ -1.52
SCN9A-201ENST00000303354 RPL28P46779 137 aaKnown RBP5.58□□□□□ -1.52
SCN9A-201ENST00000303354 A0A0U1RQV1 116 aa5.58□□□□□ -1.52
SCN9A-201ENST00000303354 LINC00242Q5T6M2 205 aa5.57□□□□□ -1.52
SCN9A-201ENST00000303354 SMIM20Q8N5G0 67 aa5.57□□□□□ -1.52
SCN9A-201ENST00000303354 TRBV10-3A0A0K0K1G6 114 aa5.57□□□□□ -1.52
SCN9A-201ENST00000303354 OTOGLQ3ZCN5 2332 aa5.57□□□□□ -1.52
SCN9A-201ENST00000303354 MED13LQ71F56 2210 aa5.57□□□□□ -1.52
SCN9A-201ENST00000303354 ATOX1O00244 68 aa5.57□□□□□ -1.52
SCN9A-201ENST00000303354 NRACQ8N912 160 aa5.57□□□□□ -1.52
SCN9A-201ENST00000303354 LINC00337Q8N6G1 96 aa5.56□□□□□ -1.52
SCN9A-201ENST00000303354 Q8N3U1 123 aa5.56□□□□□ -1.52
SCN9A-201ENST00000303354 C16orf95Q9H693 158 aa5.56□□□□□ -1.52
SCN9A-201ENST00000303354 EXPH5Q8NEV8 1989 aa5.56□□□□□ -1.52
SCN9A-201ENST00000303354 ZNF73O43830 326 aaPredicted RBP5.56□□□□□ -1.52
SCN9A-201ENST00000303354 Q6ZRU5 148 aa5.56□□□□□ -1.52
SCN9A-201ENST00000303354 SERP1Q9Y6X1 66 aa5.56□□□□□ -1.52
SCN9A-201ENST00000303354 TNCP24821 2201 aa5.56□□□□□ -1.52
SCN9A-201ENST00000303354 C16orf90A8MZG2 172 aa5.56□□□□□ -1.52
SCN9A-201ENST00000303354 H3BQ85 93 aa5.56□□□□□ -1.52
SCN9A-201ENST00000303354 Q9BRP9 147 aa5.56□□□□□ -1.52
SCN9A-201ENST00000303354 LINC00474Q9P2X8 69 aa5.55□□□□□ -1.52
SCN9A-201ENST00000303354 MRPS12O15235 138 aaKnown RBP5.55□□□□□ -1.52
SCN9A-201ENST00000303354 FAM19A3Q7Z5A8 133 aa5.55□□□□□ -1.52
SCN9A-201ENST00000303354 J3QL48 77 aa5.55□□□□□ -1.52
SCN9A-201ENST00000303354 COA6Q5JTJ3 125 aaKnown RBP5.55□□□□□ -1.52
SCN9A-201ENST00000303354 MUC6Q6W4X9 2439 aa5.55□□□□□ -1.52
SCN9A-201ENST00000303354 KLLNB2CW77 178 aa5.55□□□□□ -1.52
SCN9A-201ENST00000303354 C2orf48Q96LS8 159 aa5.55□□□□□ -1.52
SCN9A-201ENST00000303354 MT-ATP8P03928 68 aa5.55□□□□□ -1.52
SCN9A-201ENST00000303354 ARHGAP32A7KAX9 2087 aa5.55□□□□□ -1.52
SCN9A-201ENST00000303354 NBASA2RRP1 2371 aa5.54□□□□□ -1.52
SCN9A-201ENST00000303354 DHRS4-AS1Q9P1J3 65 aa5.54□□□□□ -1.52
SCN9A-201ENST00000303354 A0A087WYN8 130 aa5.54□□□□□ -1.52
SCN9A-201ENST00000303354 HIGD1BQ9P298 99 aa5.53□□□□□ -1.52
SCN9A-201ENST00000303354 PHF5AQ7RTV0 110 aaKnown RBP5.53□□□□□ -1.52
SCN9A-201ENST00000303354 LST1O00453 97 aa5.53□□□□□ -1.52
SCN9A-201ENST00000303354 TRBV27A0A0K0K1C4 114 aa5.53□□□□□ -1.52
SCN9A-201ENST00000303354 CHCHD7Q9BUK0 85 aa5.53□□□□□ -1.52
SCN9A-201ENST00000303354 PCNX3Q9H6A9 2034 aa5.53□□□□□ -1.52
SCN9A-201ENST00000303354 Q9UF83 564 aa5.53□□□□□ -1.52
SCN9A-201ENST00000303354 SMR3BP02814 79 aaPredicted RBP5.52□□□□□ -1.53
SCN9A-201ENST00000303354 TIMM17BO60830 172 aa5.52□□□□□ -1.53
SCN9A-201ENST00000303354 H3BT86 120 aa5.52□□□□□ -1.53
SCN9A-201ENST00000303354 MRPL55Q7Z7F7 128 aaKnown RBP5.52□□□□□ -1.53
SCN9A-201ENST00000303354 K7ERS5 55 aa5.51□□□□□ -1.53
SCN9A-201ENST00000303354 FAM229AH3BQW9 127 aa5.51□□□□□ -1.53
SCN9A-201ENST00000303354 CUL9Q8IWT3 2517 aa5.51□□□□□ -1.53
SCN9A-201ENST00000303354 HIVEP2P31629 2446 aa5.51□□□□□ -1.53
SCN9A-201ENST00000303354 PRYO14603 147 aa5.51□□□□□ -1.53
SCN9A-201ENST00000303354 LINC01547P58512 204 aaPredicted RBP5.51□□□□□ -1.53
SCN9A-201ENST00000303354 Q8N9L7 120 aa5.51□□□□□ -1.53
SCN9A-201ENST00000303354 C22orf24Q9Y442 160 aa5.51□□□□□ -1.53
SCN9A-201ENST00000303354 FREM1Q5H8C1 2179 aa5.51□□□□□ -1.53
SCN9A-201ENST00000303354 SMCR5Q8TEV8 140 aa5.51□□□□□ -1.53
SCN9A-201ENST00000303354 IGKV2D-30A0A075B6S6 120 aa5.5□□□□□ -1.53
SCN9A-201ENST00000303354 A0A087WSZ3 146 aa5.5□□□□□ -1.53
SCN9A-201ENST00000303354 PLA2G1BP04054 148 aaKnown RBP5.5□□□□□ -1.53
SCN9A-201ENST00000303354 IGKV2-30P06310 120 aa5.5□□□□□ -1.53
SCN9A-201ENST00000303354 Q8IZM0 81 aa5.5□□□□□ -1.53
SCN9A-201ENST00000303354 LINC00208Q96KT6 92 aa5.5□□□□□ -1.53
SCN9A-201ENST00000303354 FSTL3O95633 263 aa5.5□□□□□ -1.53
SCN9A-201ENST00000303354 POLR2KP53803 58 aaKnown RBP5.49□□□□□ -1.53
SCN9A-201ENST00000303354 NHLRC4P0CG21 123 aaPredicted RBP5.49□□□□□ -1.53
SCN9A-201ENST00000303354 CREBBPQ92793 2442 aa5.49□□□□□ -1.53
SCN9A-201ENST00000303354 MOBPQ13875 183 aa5.49□□□□□ -1.53
SCN9A-201ENST00000303354 LINC00643Q86TS7 51 aa5.49□□□□□ -1.53
SCN9A-201ENST00000303354 MED12LQ86YW9 2145 aa5.49□□□□□ -1.53
SCN9A-201ENST00000303354 LINC00315P59091 139 aa5.48□□□□□ -1.53
SCN9A-201ENST00000303354 TSPEAR-AS2P59090 65 aa5.48□□□□□ -1.53
SCN9A-201ENST00000303354 XIRP2A4UGR9 3374 aa5.48□□□□□ -1.53
SCN9A-201ENST00000303354 RTL8CO15255 209 aa5.48□□□□□ -1.53
SCN9A-201ENST00000303354 PDE6GP18545 87 aa5.48□□□□□ -1.53
SCN9A-201ENST00000303354 SERP2Q8N6R1 65 aa5.48□□□□□ -1.53
SCN9A-201ENST00000303354 SMIM1B2RUZ4 78 aa5.48□□□□□ -1.53
SCN9A-201ENST00000303354 BEAN1Q3B7T3 259 aa5.48□□□□□ -1.53
SCN9A-201ENST00000303354 A0A087WVE0 104 aa5.47□□□□□ -1.53
SCN9A-201ENST00000303354 NOTCH3Q9UM47 2321 aa5.47□□□□□ -1.53
SCN9A-201ENST00000303354 ADAMTSL4-AS1Q5T5F5 129 aa5.47□□□□□ -1.53
SCN9A-201ENST00000303354 NDUFC2O95298 119 aa5.47□□□□□ -1.53
SCN9A-201ENST00000303354 LINC00575Q6W349 94 aa5.47□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 59 ms