RNA–Protein interactions for RNA: ENST00000263274.11

LIG1-201, Transcript of DNA ligase 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIG1, Length 3,384 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-201ENST00000263274 DEFB114Q30KQ6 69 aa9.14□□□□□ -0.95
LIG1-201ENST00000263274 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP9.14□□□□□ -0.95
LIG1-201ENST00000263274 NIPBLQ6KC79 2804 aaeCLIP9.14□□□□□ -0.95
LIG1-201ENST00000263274 TRBV30A0A0K0K1B3 111 aa9.13□□□□□ -0.95
LIG1-201ENST00000263274 LITAFQ99732 161 aa9.13□□□□□ -0.95
LIG1-201ENST00000263274 F8WDY8 70 aa9.13□□□□□ -0.95
LIG1-201ENST00000263274 H7C423 109 aa9.13□□□□□ -0.95
LIG1-201ENST00000263274 TMEM126AQ9H061 195 aa9.13□□□□□ -0.95
LIG1-201ENST00000263274 FAM19A5Q7Z5A7 132 aaPredicted RBP9.12□□□□□ -0.95
LIG1-201ENST00000263274 Q6Q795 121 aa9.12□□□□□ -0.95
LIG1-201ENST00000263274 KLK5Q9Y337 293 aaPredicted RBP9.12□□□□□ -0.95
LIG1-201ENST00000263274 C11orf68Q9H3H3 251 aaKnown RBP9.12□□□□□ -0.95
LIG1-201ENST00000263274 WFDC10AQ9H1F0 79 aa9.11□□□□□ -0.95
LIG1-201ENST00000263274 PIK3CD-AS1Q5SR53 167 aa9.1□□□□□ -0.95
LIG1-201ENST00000263274 C11orf72Q8NBR9 251 aa9.1□□□□□ -0.95
LIG1-201ENST00000263274 SEC61GP60059 68 aa9.1□□□□□ -0.95
LIG1-201ENST00000263274 SPANXDQ9BXN6 97 aa9.1□□□□□ -0.95
LIG1-201ENST00000263274 SPANXCQ9NY87 97 aa9.1□□□□□ -0.95
LIG1-201ENST00000263274 HERVK_113P63121 156 aa9.1□□□□□ -0.95
LIG1-201ENST00000263274 ODF3L2Q3SX64 289 aa9.1□□□□□ -0.95
LIG1-201ENST00000263274 LINC00242Q5T6M2 205 aa9.1□□□□□ -0.95
LIG1-201ENST00000263274 LOC100131303A0A0U1RQF7 123 aa9.09□□□□□ -0.95
LIG1-201ENST00000263274 LINC00308Q8TCZ7 52 aa9.09□□□□□ -0.95
LIG1-201ENST00000263274 F8P00451 2351 aa9.09□□□□□ -0.95
LIG1-201ENST00000263274 NBEAL2Q6ZNJ1 2754 aa9.09□□□□□ -0.95
LIG1-201ENST00000263274 DNAJC30Q96LL9 226 aa9.09□□□□□ -0.95
LIG1-201ENST00000263274 EDA2RQ9HAV5 297 aa9.09□□□□□ -0.95
LIG1-201ENST00000263274 TRGV4A0A0C4DH28 118 aa9.09□□□□□ -0.95
LIG1-201ENST00000263274 RS1O15537 224 aa9.08□□□□□ -0.96
LIG1-201ENST00000263274 C1orf158Q8N1D5 194 aa9.08□□□□□ -0.96
LIG1-201ENST00000263274 C4orf3Q8WVX3 66 aa9.08□□□□□ -0.96
LIG1-201ENST00000263274 K7EQD1 137 aa9.07□□□□□ -0.96
LIG1-201ENST00000263274 CCL24O00175 119 aa9.07□□□□□ -0.96
LIG1-201ENST00000263274 LINC00158P58513 81 aa9.07□□□□□ -0.96
LIG1-201ENST00000263274 NDUFA1O15239 70 aa9.07□□□□□ -0.96
LIG1-201ENST00000263274 PFN2P35080 140 aa9.07□□□□□ -0.96
LIG1-201ENST00000263274 LST1O00453 97 aa9.06□□□□□ -0.96
LIG1-201ENST00000263274 Q8N2B8 174 aa9.06□□□□□ -0.96
LIG1-201ENST00000263274 OR13C6PQ8NH95 151 aa9.06□□□□□ -0.96
LIG1-201ENST00000263274 DEFB130BP0DP73 79 aa9.06□□□□□ -0.96
LIG1-201ENST00000263274 DEFB130AP0DP74 79 aa9.06□□□□□ -0.96
LIG1-201ENST00000263274 TIRAPP58753 221 aa9.06□□□□□ -0.96
LIG1-201ENST00000263274 NTM-AS1Q6ZSK4 140 aa9.06□□□□□ -0.96
LIG1-201ENST00000263274 TMEM243Q9BU79 118 aa9.06□□□□□ -0.96
LIG1-201ENST00000263274 Q9HAA7 133 aa9.06□□□□□ -0.96
LIG1-201ENST00000263274 A0A096LNT2 108 aa9.05□□□□□ -0.96
LIG1-201ENST00000263274 DEFB113Q30KQ7 82 aa9.05□□□□□ -0.96
LIG1-201ENST00000263274 H3BT86 120 aa9.05□□□□□ -0.96
LIG1-201ENST00000263274 C5orf38Q86SI9 138 aa9.05□□□□□ -0.96
LIG1-201ENST00000263274 SMIM1B2RUZ4 78 aa9.04□□□□□ -0.96
LIG1-201ENST00000263274 SOSTDC1Q6X4U4 206 aa9.04□□□□□ -0.96
LIG1-201ENST00000263274 A0A096LPF7 62 aa9.04□□□□□ -0.96
LIG1-201ENST00000263274 C1orf43Q9BWL3 253 aa9.04□□□□□ -0.96
LIG1-201ENST00000263274 PKIGQ9Y2B9 76 aa9.04□□□□□ -0.96
LIG1-201ENST00000263274 BEAN1Q3B7T3 259 aa9.04□□□□□ -0.96
LIG1-201ENST00000263274 CLPSL2Q6UWE3 100 aa9.03□□□□□ -0.96
LIG1-201ENST00000263274 BAALC-AS2P0C853 105 aa9.03□□□□□ -0.96
LIG1-201ENST00000263274 RNF152Q8N8N0 203 aa9.03□□□□□ -0.96
LIG1-201ENST00000263274 MIR7-3HGQ8N6C7 128 aa9.03□□□□□ -0.96
LIG1-201ENST00000263274 J3KT08 172 aa9.02□□□□□ -0.97
LIG1-201ENST00000263274 C3orf22Q8N5N4 141 aa9.02□□□□□ -0.97
LIG1-201ENST00000263274 WFDC11Q8NEX6 87 aa9.02□□□□□ -0.97
LIG1-201ENST00000263274 DNAJC9-AS1A6NH13 148 aa9.02□□□□□ -0.97
LIG1-201ENST00000263274 CRPP02741 224 aa9.02□□□□□ -0.97
LIG1-201ENST00000263274 DAZ2Q13117 558 aaKnown RBP9.02□□□□□ -0.97
LIG1-201ENST00000263274 GAGE2AQ6NT46 116 aa9.02□□□□□ -0.97
LIG1-201ENST00000263274 HRCT1Q6UXD1 115 aa9.02□□□□□ -0.97
LIG1-201ENST00000263274 DAZ4Q86SG3 579 aaKnown RBP9.02□□□□□ -0.97
LIG1-201ENST00000263274 DAZ3Q9NR90 486 aaKnown RBP9.02□□□□□ -0.97
LIG1-201ENST00000263274 CDC42SE2Q9NRR3 84 aa9.02□□□□□ -0.97
LIG1-201ENST00000263274 PAX4O43316 350 aa9.01□□□□□ -0.97
LIG1-201ENST00000263274 COX7A2LO14548 114 aa9.01□□□□□ -0.97
LIG1-201ENST00000263274 DNAL4O96015 105 aa9.01□□□□□ -0.97
LIG1-201ENST00000263274 COPS9Q8WXC6 57 aa9.01□□□□□ -0.97
LIG1-201ENST00000263274 TIMM17BO60830 172 aa9□□□□□ -0.97
LIG1-201ENST00000263274 KIR2DL5BQ8NHK3 375 aa9□□□□□ -0.97
LIG1-201ENST00000263274 ATP5G1P05496 136 aa8.99□□□□□ -0.97
LIG1-201ENST00000263274 UQCRQO14949 82 aa8.99□□□□□ -0.97
LIG1-201ENST00000263274 C4orf26Q17RF5 130 aa8.99□□□□□ -0.97
LIG1-201ENST00000263274 SND1-IT1Q9HBX3 110 aa8.99□□□□□ -0.97
LIG1-201ENST00000263274 FSHBP01225 129 aa8.99□□□□□ -0.97
LIG1-201ENST00000263274 CR1P17927 2039 aa8.99□□□□□ -0.97
LIG1-201ENST00000263274 TRBV10-1A0A0K0K1A3 114 aa8.98□□□□□ -0.97
LIG1-201ENST00000263274 IGLV4-60A0A075B6I1 120 aa8.98□□□□□ -0.97
LIG1-201ENST00000263274 IGLV5-39A0A0G2JS06 123 aa8.98□□□□□ -0.97
LIG1-201ENST00000263274 hADV29S1A0JD25 119 aa8.98□□□□□ -0.97
LIG1-201ENST00000263274 C6orf226Q5I0X4 101 aa8.98□□□□□ -0.97
LIG1-201ENST00000263274 COX7B2Q8TF08 81 aa8.98□□□□□ -0.97
LIG1-201ENST00000263274 A8MTW9 85 aa8.98□□□□□ -0.97
LIG1-201ENST00000263274 XCL1P47992 114 aa8.98□□□□□ -0.97
LIG1-201ENST00000263274 IGLV5-45A0A087WSX0 123 aa8.97□□□□□ -0.97
LIG1-201ENST00000263274 TRBV7-7A0A0K0K1E9 115 aa8.97□□□□□ -0.97
LIG1-201ENST00000263274 RNASE1P07998 156 aaKnown RBP8.97□□□□□ -0.97
LIG1-201ENST00000263274 ESM1Q9NQ30 184 aa8.97□□□□□ -0.97
LIG1-201ENST00000263274 HIVEP1P15822 2718 aa8.97□□□□□ -0.97
LIG1-201ENST00000263274 FAM218AQ96MZ4 157 aa8.96□□□□□ -0.97
LIG1-201ENST00000263274 ATRQ13535 2644 aa8.96□□□□□ -0.97
LIG1-201ENST00000263274 SLPIP03973 132 aa8.94□□□□□ -0.98
LIG1-201ENST00000263274 OTOGQ6ZRI0 2925 aa8.94□□□□□ -0.98
LIG1-201ENST00000263274 TRAV13-2A0A0B4J235 113 aa8.94□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 58 ms