RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 CLUHP3Q96NS8 147 aa14.02□□□□□ -0.16
UPF1-201ENST00000262803 LINC00310P59036 64 aa14.02□□□□□ -0.16
UPF1-201ENST00000262803 A8MZ25 164 aa14.02□□□□□ -0.17
UPF1-201ENST00000262803 POLR2KP53803 58 aaKnown RBP14.02□□□□□ -0.17
UPF1-201ENST00000262803 UBE2D3P61077 147 aa14.02□□□□□ -0.17
UPF1-201ENST00000262803 UBE2D2P62837 147 aa14.02□□□□□ -0.17
UPF1-201ENST00000262803 ATG2AQ2TAZ0 1938 aa14.02□□□□□ -0.17
UPF1-201ENST00000262803 NDUFV3P56181 108 aaKnown RBP14.01□□□□□ -0.17
UPF1-201ENST00000262803 DCANP1Q8TF63 244 aa14□□□□□ -0.17
UPF1-201ENST00000262803 IMUPQ9GZP8 106 aa14□□□□□ -0.17
UPF1-201ENST00000262803 A0A096LNI7 61 aa14□□□□□ -0.17
UPF1-201ENST00000262803 FAM236DA0A1B0GTK5 79 aa14□□□□□ -0.17
UPF1-201ENST00000262803 FAM236CP0DP71 79 aa14□□□□□ -0.17
UPF1-201ENST00000262803 Q6ZS46 218 aa14□□□□□ -0.17
UPF1-201ENST00000262803 SLPIP03973 132 aa14□□□□□ -0.17
UPF1-201ENST00000262803 C16orf95Q9H693 158 aa14□□□□□ -0.17
UPF1-201ENST00000262803 CNFNQ9BYD5 112 aa13.99□□□□□ -0.17
UPF1-201ENST00000262803 RPL28P46779 137 aaKnown RBP13.99□□□□□ -0.17
UPF1-201ENST00000262803 PLAC8L1A1L4L8 177 aa13.98□□□□□ -0.17
UPF1-201ENST00000262803 SDIM1Q6ZPB5 146 aa13.98□□□□□ -0.17
UPF1-201ENST00000262803 EGFEM1PQ0D2K5 195 aa13.98□□□□□ -0.17
UPF1-201ENST00000262803 DOPEY1Q5JWR5 2465 aa13.97□□□□□ -0.17
UPF1-201ENST00000262803 LY6G6CO95867 125 aa13.97□□□□□ -0.17
UPF1-201ENST00000262803 C3orf22Q8N5N4 141 aa13.97□□□□□ -0.17
UPF1-201ENST00000262803 ZNF73O43830 326 aaPredicted RBP13.96□□□□□ -0.17
UPF1-201ENST00000262803 C1orf158Q8N1D5 194 aa13.96□□□□□ -0.17
UPF1-201ENST00000262803 ENHOQ6UWT2 76 aa13.96□□□□□ -0.17
UPF1-201ENST00000262803 IGHV4-30-4P0DP06 118 aa13.95□□□□□ -0.18
UPF1-201ENST00000262803 CDSNQ15517 529 aa13.95□□□□□ -0.18
UPF1-201ENST00000262803 MRPS12O15235 138 aaKnown RBP13.95□□□□□ -0.18
UPF1-201ENST00000262803 C20orf197Q8N268 126 aa13.95□□□□□ -0.18
UPF1-201ENST00000262803 URB1-AS1Q96HZ7 61 aa13.95□□□□□ -0.18
UPF1-201ENST00000262803 PRM2P04554 102 aa13.94□□□□□ -0.18
UPF1-201ENST00000262803 Q6ZQY7 126 aa13.94□□□□□ -0.18
UPF1-201ENST00000262803 C18orf65Q6ZTR6 163 aa13.94□□□□□ -0.18
UPF1-201ENST00000262803 LRP4O75096 1905 aa13.94□□□□□ -0.18
UPF1-201ENST00000262803 NDUFC2-KCTD14E9PQ53 114 aa13.94□□□□□ -0.18
UPF1-201ENST00000262803 WFDC10BQ8IUB3 73 aa13.94□□□□□ -0.18
UPF1-201ENST00000262803 FAM19A3Q7Z5A8 133 aa13.93□□□□□ -0.18
UPF1-201ENST00000262803 IGLV2-18A0A075B6J9 118 aa13.93□□□□□ -0.18
UPF1-201ENST00000262803 CDC42SE2Q9NRR3 84 aa13.93□□□□□ -0.18
UPF1-201ENST00000262803 A0A0J9YWU9 116 aa13.93□□□□□ -0.18
UPF1-201ENST00000262803 LST1O00453 97 aa13.93□□□□□ -0.18
UPF1-201ENST00000262803 SERP1Q9Y6X1 66 aa13.93□□□□□ -0.18
UPF1-201ENST00000262803 IGKV2-28A0A075B6P5 120 aa13.92□□□□□ -0.18
UPF1-201ENST00000262803 IGKV2D-28P01615 120 aa13.92□□□□□ -0.18
UPF1-201ENST00000262803 IGLV1-51P01701 117 aa13.92□□□□□ -0.18
UPF1-201ENST00000262803 C10orf25Q5T742 122 aa13.92□□□□□ -0.18
UPF1-201ENST00000262803 Q8N9L7 120 aa13.92□□□□□ -0.18
UPF1-201ENST00000262803 WFDC10AQ9H1F0 79 aa13.91□□□□□ -0.18
UPF1-201ENST00000262803 FAM240AA0A1B0GVK7 77 aa13.9□□□□□ -0.18
UPF1-201ENST00000262803 LOC100131303A0A0U1RQF7 123 aa13.89□□□□□ -0.19
UPF1-201ENST00000262803 PTPRSQ13332 1948 aa13.89□□□□□ -0.19
UPF1-201ENST00000262803 NANOS2P60321 138 aaKnown RBP13.89□□□□□ -0.19
UPF1-201ENST00000262803 PRRC2AP48634 2157 aaKnown RBP13.89□□□□□ -0.19
UPF1-201ENST00000262803 Q6JHZ5 121 aa13.88□□□□□ -0.19
UPF1-201ENST00000262803 TLN2Q9Y4G6 2542 aa13.88□□□□□ -0.19
UPF1-201ENST00000262803 IGIPA6NJ69 53 aa13.88□□□□□ -0.19
UPF1-201ENST00000262803 SCXQ7RTU7 201 aa13.87□□□□□ -0.19
UPF1-201ENST00000262803 M0R2N4 97 aa13.87□□□□□ -0.19
UPF1-201ENST00000262803 AVPP01185 164 aa13.87□□□□□ -0.19
UPF1-201ENST00000262803 UTRNP46939 3433 aa13.86□□□□□ -0.19
UPF1-201ENST00000262803 LINC01561Q8N1V8 128 aa13.86□□□□□ -0.19
UPF1-201ENST00000262803 SERP2Q8N6R1 65 aa13.86□□□□□ -0.19
UPF1-201ENST00000262803 SMIM11BQ8TCY0 68 aa13.86□□□□□ -0.19
UPF1-201ENST00000262803 ODF3L2Q3SX64 289 aa13.86□□□□□ -0.19
UPF1-201ENST00000262803 SVIPQ8NHG7 77 aa13.86□□□□□ -0.19
UPF1-201ENST00000262803 USP9XQ93008 2570 aaPredicted RBP13.86□□□□□ -0.19
UPF1-201ENST00000262803 CYSRT1A8MQ03 144 aa13.85□□□□□ -0.19
UPF1-201ENST00000262803 SPINK6Q6UWN8 80 aa13.85□□□□□ -0.19
UPF1-201ENST00000262803 C3orf84H3BNL1 204 aa13.85□□□□□ -0.19
UPF1-201ENST00000262803 PPDPFQ9H3Y8 114 aa13.85□□□□□ -0.19
UPF1-201ENST00000262803 CSDC2Q9Y534 153 aaKnown RBP13.85□□□□□ -0.19
UPF1-201ENST00000262803 BRK1Q8WUW1 75 aa13.85□□□□□ -0.19
UPF1-201ENST00000262803 NHLRC4P0CG21 123 aaPredicted RBP13.84□□□□□ -0.19
UPF1-201ENST00000262803 POM121L12Q8N7R1 296 aa13.84□□□□□ -0.19
UPF1-201ENST00000262803 EML5Q05BV3 1969 aa13.84□□□□□ -0.19
UPF1-201ENST00000262803 M0QXV9 152 aa13.84□□□□□ -0.19
UPF1-201ENST00000262803 EDN2P20800 178 aa13.84□□□□□ -0.19
UPF1-201ENST00000262803 LINC00526Q96FQ7 95 aa13.84□□□□□ -0.19
UPF1-201ENST00000262803 FSHBP01225 129 aa13.83□□□□□ -0.2
UPF1-201ENST00000262803 JMJD1CQ15652 2540 aa13.82□□□□□ -0.2
UPF1-201ENST00000262803 C2orf48Q96LS8 159 aa13.82□□□□□ -0.2
UPF1-201ENST00000262803 REG3GQ6UW15 175 aa13.81□□□□□ -0.2
UPF1-201ENST00000262803 CEP295Q9C0D2 2601 aa13.81□□□□□ -0.2
UPF1-201ENST00000262803 ABCA12Q86UK0 2595 aa13.81□□□□□ -0.2
UPF1-201ENST00000262803 OXLD1Q5BKU9 147 aa13.81□□□□□ -0.2
UPF1-201ENST00000262803 IGLV9-49A0A0B4J1Y8 123 aa13.8□□□□□ -0.2
UPF1-201ENST00000262803 IGLV5-52A0A0A0MRZ9 124 aa13.79□□□□□ -0.2
UPF1-201ENST00000262803 WFDC13Q8IUB5 93 aa13.79□□□□□ -0.2
UPF1-201ENST00000262803 SETD2Q9BYW2 2564 aaPredicted RBP13.79□□□□□ -0.2
UPF1-201ENST00000262803 COX8CQ7Z4L0 72 aa13.79□□□□□ -0.2
UPF1-201ENST00000262803 RPL37AP8A6NKH3 93 aa13.78□□□□□ -0.2
UPF1-201ENST00000262803 XGP55808 180 aa13.78□□□□□ -0.2
UPF1-201ENST00000262803 LINC00242Q5T6M2 205 aa13.78□□□□□ -0.2
UPF1-201ENST00000262803 CENPFP49454 3210 aa13.77□□□□□ -0.2
UPF1-201ENST00000262803 PRYO14603 147 aa13.76□□□□□ -0.21
UPF1-201ENST00000262803 BEAN1Q3B7T3 259 aa13.76□□□□□ -0.21
UPF1-201ENST00000262803 NTM-AS1Q6ZSK4 140 aa13.76□□□□□ -0.21
UPF1-201ENST00000262803 A0A1B0GUV1 79 aa13.75□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 53.9 ms