RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 FGF6P10767 208 aa11.75□□□□□ -0.53
CLN3-252ENST00000636907 UQCR10Q9UDW1 63 aa11.75□□□□□ -0.53
CLN3-252ENST00000636907 C11orf86A6NJI1 115 aa11.75□□□□□ -0.53
CLN3-252ENST00000636907 TMEM97Q5BJF2 176 aa11.75□□□□□ -0.53
CLN3-252ENST00000636907 UBE2L6O14933 153 aa11.74□□□□□ -0.53
CLN3-252ENST00000636907 MRPS36P82909 103 aaKnown RBP11.74□□□□□ -0.53
CLN3-252ENST00000636907 DGAT2L7PQ6IED9 249 aa11.74□□□□□ -0.53
CLN3-252ENST00000636907 Q6ZTC4 211 aa11.74□□□□□ -0.53
CLN3-252ENST00000636907 MRPL52Q86TS9 123 aaKnown RBP11.74□□□□□ -0.53
CLN3-252ENST00000636907 TP73-AS1Q9UF72 201 aa11.73□□□□□ -0.53
CLN3-252ENST00000636907 H7C423 109 aa11.72□□□□□ -0.53
CLN3-252ENST00000636907 NANOS2P60321 138 aaKnown RBP11.72□□□□□ -0.53
CLN3-252ENST00000636907 GAGE6Q13070 117 aa11.72□□□□□ -0.53
CLN3-252ENST00000636907 CSDC2Q9Y534 153 aaKnown RBP11.72□□□□□ -0.53
CLN3-252ENST00000636907 NFE4Q86UQ8 179 aa11.71□□□□□ -0.53
CLN3-252ENST00000636907 C11orf45Q8TAV5 145 aa11.71□□□□□ -0.53
CLN3-252ENST00000636907 HUWE1Q7Z6Z7 4374 aaKnown RBP11.71□□□□□ -0.53
CLN3-252ENST00000636907 IGKV2D-26A0A0A0MRZ7 120 aa11.71□□□□□ -0.54
CLN3-252ENST00000636907 A0A0J9YXV3 536 aa11.71□□□□□ -0.54
CLN3-252ENST00000636907 COX8AP10176 69 aa11.71□□□□□ -0.54
CLN3-252ENST00000636907 SMAGPQ0VAQ4 97 aa11.71□□□□□ -0.54
CLN3-252ENST00000636907 AMMECR1LQ6DCA0 310 aa11.71□□□□□ -0.54
CLN3-252ENST00000636907 CHCHD5Q9BSY4 110 aa11.71□□□□□ -0.54
CLN3-252ENST00000636907 NMUP48645 174 aa11.7□□□□□ -0.54
CLN3-252ENST00000636907 MRPL23Q16540 153 aaKnown RBP11.7□□□□□ -0.54
CLN3-252ENST00000636907 SLC25A34Q6PIV7 304 aa11.7□□□□□ -0.54
CLN3-252ENST00000636907 OR5A1Q8NGJ0 315 aa11.7□□□□□ -0.54
CLN3-252ENST00000636907 CHAC1Q9BUX1 264 aa11.7□□□□□ -0.54
CLN3-252ENST00000636907 ICOSQ9Y6W8 199 aa11.7□□□□□ -0.54
CLN3-252ENST00000636907 DNHD1Q96M86 4753 aa11.69□□□□□ -0.54
CLN3-252ENST00000636907 C2orf88Q9BSF0 95 aa11.69□□□□□ -0.54
CLN3-252ENST00000636907 TMEM101Q96IK0 257 aa11.68□□□□□ -0.54
CLN3-252ENST00000636907 CDC42SE2Q9NRR3 84 aa11.68□□□□□ -0.54
CLN3-252ENST00000636907 ZNF25P17030 456 aaPredicted RBP11.68□□□□□ -0.54
CLN3-252ENST00000636907 HNRNPA3P51991 378 aaKnown RBP11.68□□□□□ -0.54
CLN3-252ENST00000636907 PCP2Q8IVA1 136 aa11.68□□□□□ -0.54
CLN3-252ENST00000636907 UBE2D1P51668 147 aa11.67□□□□□ -0.54
CLN3-252ENST00000636907 DEFA6Q01524 100 aa11.67□□□□□ -0.54
CLN3-252ENST00000636907 TMEM170BQ5T4T1 132 aa11.67□□□□□ -0.54
CLN3-252ENST00000636907 SH2D6Q7Z4S9 175 aa11.66□□□□□ -0.54
CLN3-252ENST00000636907 BOD1L2Q8IYS8 172 aa11.66□□□□□ -0.54
CLN3-252ENST00000636907 IGLV4-60A0A075B6I1 120 aa11.65□□□□□ -0.54
CLN3-252ENST00000636907 DEFB131BA0A096LNP1 70 aa11.65□□□□□ -0.54
CLN3-252ENST00000636907 H3BNG1 76 aa11.65□□□□□ -0.54
CLN3-252ENST00000636907 ZNF22P17026 224 aaPredicted RBP11.65□□□□□ -0.54
CLN3-252ENST00000636907 TTTY13Q9BZ97 58 aa11.65□□□□□ -0.54
CLN3-252ENST00000636907 TINCRA0A1B0GVN0 87 aa11.65□□□□□ -0.55
CLN3-252ENST00000636907 E9PLD3 99 aa11.65□□□□□ -0.55
CLN3-252ENST00000636907 CTAG1AP78358 180 aa11.65□□□□□ -0.55
CLN3-252ENST00000636907 KRTAP21-3Q3LHN1 58 aa11.65□□□□□ -0.55
CLN3-252ENST00000636907 DNAH9Q9NYC9 4486 aa11.64□□□□□ -0.55
CLN3-252ENST00000636907 TMEM262E9PQX1 116 aa11.63□□□□□ -0.55
CLN3-252ENST00000636907 DLEU1O43261 78 aa11.63□□□□□ -0.55
CLN3-252ENST00000636907 HERVK_113P61574 105 aa11.63□□□□□ -0.55
CLN3-252ENST00000636907 B9D2Q9BPU9 175 aa11.63□□□□□ -0.55
CLN3-252ENST00000636907 TRAV13-1A0A0B4J241 112 aa11.62□□□□□ -0.55
CLN3-252ENST00000636907 TRAV8-6A0A0B4J262 113 aa11.62□□□□□ -0.55
CLN3-252ENST00000636907 TMEM223A0PJW6 202 aa11.62□□□□□ -0.55
CLN3-252ENST00000636907 MPV17L2Q567V2 206 aa11.62□□□□□ -0.55
CLN3-252ENST00000636907 C2orf91Q6ZV80 131 aa11.62□□□□□ -0.55
CLN3-252ENST00000636907 MRPS16Q9Y3D3 137 aaKnown RBP11.62□□□□□ -0.55
CLN3-252ENST00000636907 RBX1P62877 108 aa11.62□□□□□ -0.55
CLN3-252ENST00000636907 LELP1Q5T871 98 aa11.62□□□□□ -0.55
CLN3-252ENST00000636907 FAM19A3Q7Z5A8 133 aa11.62□□□□□ -0.55
CLN3-252ENST00000636907 MAPKAPK5-AS1Q8N8E1 139 aa11.62□□□□□ -0.55
CLN3-252ENST00000636907 A0A1B0GUV1 79 aa11.61□□□□□ -0.55
CLN3-252ENST00000636907 TIRAPP58753 221 aa11.61□□□□□ -0.55
CLN3-252ENST00000636907 LINC00242Q5T6M2 205 aa11.61□□□□□ -0.55
CLN3-252ENST00000636907 LYPD5Q6UWN5 251 aa11.61□□□□□ -0.55
CLN3-252ENST00000636907 GEMIN7Q9H840 131 aaKnown RBP11.61□□□□□ -0.55
CLN3-252ENST00000636907 TRAV10A0A0B4J240 114 aa11.6□□□□□ -0.55
CLN3-252ENST00000636907 COX6A2Q02221 97 aa11.6□□□□□ -0.55
CLN3-252ENST00000636907 LINC00469Q8N7U9 141 aa11.59□□□□□ -0.55
CLN3-252ENST00000636907 IGHV3-64A0A075B6Q5 118 aa11.59□□□□□ -0.55
CLN3-252ENST00000636907 IGLV5-45A0A087WSX0 123 aa11.59□□□□□ -0.55
CLN3-252ENST00000636907 Q8N3U1 123 aa11.59□□□□□ -0.55
CLN3-252ENST00000636907 CDKN2A-AS1Q9UH64 79 aa11.59□□□□□ -0.55
CLN3-252ENST00000636907 IGKV3OR2-268A0A0C4DH90 116 aa11.58□□□□□ -0.56
CLN3-252ENST00000636907 EREGO14944 169 aa11.58□□□□□ -0.56
CLN3-252ENST00000636907 TSPEAR-AS2P59090 65 aa11.58□□□□□ -0.56
CLN3-252ENST00000636907 HERVK_113P63121 156 aa11.58□□□□□ -0.56
CLN3-252ENST00000636907 SEC11AP67812 179 aa11.58□□□□□ -0.56
CLN3-252ENST00000636907 SNHG12Q9BXW3 62 aa11.58□□□□□ -0.56
CLN3-252ENST00000636907 LEPROTO15243 131 aa11.57□□□□□ -0.56
CLN3-252ENST00000636907 SIVA1O15304 175 aa11.57□□□□□ -0.56
CLN3-252ENST00000636907 MYMXA0A1B0GTQ4 84 aa11.56□□□□□ -0.56
CLN3-252ENST00000636907 M0R143 59 aa11.56□□□□□ -0.56
CLN3-252ENST00000636907 SPINK8P0C7L1 97 aa11.56□□□□□ -0.56
CLN3-252ENST00000636907 TRAV8-3A0A0A6YYJ7 113 aa11.55□□□□□ -0.56
CLN3-252ENST00000636907 J3QQQ9 107 aa11.55□□□□□ -0.56
CLN3-252ENST00000636907 ZNF815PA8K554 130 aa11.55□□□□□ -0.56
CLN3-252ENST00000636907 H3BRM9 83 aa11.55□□□□□ -0.56
CLN3-252ENST00000636907 IGHV1-58A0A0C4DH39 117 aa11.54□□□□□ -0.56
CLN3-252ENST00000636907 ESRGQ1W209 222 aa11.54□□□□□ -0.56
CLN3-252ENST00000636907 LINC00959A0A1B0GUT2 108 aa11.53□□□□□ -0.56
CLN3-252ENST00000636907 IGHV3-30-3P0DP02 117 aa11.53□□□□□ -0.56
CLN3-252ENST00000636907 LGALS3P17931 250 aaKnown RBP11.53□□□□□ -0.56
CLN3-252ENST00000636907 HINT1P49773 126 aaPredicted RBP11.53□□□□□ -0.56
CLN3-252ENST00000636907 BATFQ16520 125 aa11.53□□□□□ -0.56
CLN3-252ENST00000636907 CLPSL2Q6UWE3 100 aa11.53□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 74.9 ms