RNA–Protein interactions for RNA: ENST00000629179.1

PNKP-223, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 4

Gene PNKP, Length 811 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-223ENST00000629179 CLRN3Q8NCR9 226 aa9.2□□□□□ -0.94
PNKP-223ENST00000629179 OR5A1Q8NGJ0 315 aa9.2□□□□□ -0.94
PNKP-223ENST00000629179 ANAPC16Q96DE5 110 aa9.2□□□□□ -0.94
PNKP-223ENST00000629179 DNAH8Q96JB1 4490 aa9.19□□□□□ -0.94
PNKP-223ENST00000629179 TRBV24-1A0A075B6N3 115 aa9.19□□□□□ -0.94
PNKP-223ENST00000629179 TNFRSF6BO95407 300 aa9.19□□□□□ -0.94
PNKP-223ENST00000629179 ATP5L2Q7Z4Y8 100 aa9.19□□□□□ -0.94
PNKP-223ENST00000629179 MRPL52Q86TS9 123 aaKnown RBP9.19□□□□□ -0.94
PNKP-223ENST00000629179 KIR2DL4Q99706 377 aa9.19□□□□□ -0.94
PNKP-223ENST00000629179 C20orf78Q9BR46 151 aa9.19□□□□□ -0.94
PNKP-223ENST00000629179 FAM229AH3BQW9 127 aa9.18□□□□□ -0.94
PNKP-223ENST00000629179 NPYP01303 97 aa9.18□□□□□ -0.94
PNKP-223ENST00000629179 SCXQ7RTU7 201 aa9.18□□□□□ -0.94
PNKP-223ENST00000629179 C9orf163Q8N9P6 203 aa9.18□□□□□ -0.94
PNKP-223ENST00000629179 CDC42SE2Q9NRR3 84 aa9.18□□□□□ -0.94
PNKP-223ENST00000629179 SRRM2Q9UQ35 2752 aaKnown RBP9.18□□□□□ -0.94
PNKP-223ENST00000629179 LINC00959A0A1B0GUT2 108 aa9.17□□□□□ -0.94
PNKP-223ENST00000629179 SLPIP03973 132 aa9.17□□□□□ -0.94
PNKP-223ENST00000629179 ADCYAP1P18509 176 aa9.17□□□□□ -0.94
PNKP-223ENST00000629179 RPL32P62910 135 aaKnown RBP9.17□□□□□ -0.94
PNKP-223ENST00000629179 ZNF664Q8N3J9 261 aa9.17□□□□□ -0.94
PNKP-223ENST00000629179 C15orf56Q8N910 161 aa9.17□□□□□ -0.94
PNKP-223ENST00000629179 CHAC1Q9BUX1 264 aa9.17□□□□□ -0.94
PNKP-223ENST00000629179 FAT1Q14517 4588 aa9.16□□□□□ -0.94
PNKP-223ENST00000629179 TMEM218A2RU14 115 aa9.16□□□□□ -0.94
PNKP-223ENST00000629179 PPBPP02775 128 aa9.16□□□□□ -0.94
PNKP-223ENST00000629179 INAFM2P0DMQ5 153 aa9.16□□□□□ -0.94
PNKP-223ENST00000629179 XCL1P47992 114 aa9.16□□□□□ -0.94
PNKP-223ENST00000629179 FOXI1Q12951 378 aa9.16□□□□□ -0.94
PNKP-223ENST00000629179 CFAP161Q6P656 301 aa9.16□□□□□ -0.94
PNKP-223ENST00000629179 CIRBP-AS1Q8TBR5 109 aa9.16□□□□□ -0.94
PNKP-223ENST00000629179 SMIM2Q9BVW6 85 aa9.16□□□□□ -0.94
PNKP-223ENST00000629179 AP5S1Q9NUS5 200 aa9.16□□□□□ -0.94
PNKP-223ENST00000629179 UBE2D4Q9Y2X8 147 aa9.16□□□□□ -0.94
PNKP-223ENST00000629179 CCL25O15444 150 aa9.15□□□□□ -0.94
PNKP-223ENST00000629179 CNBPP62633 177 aaKnown RBP9.15□□□□□ -0.94
PNKP-223ENST00000629179 HIGD2BQ4VC39 106 aa9.15□□□□□ -0.94
PNKP-223ENST00000629179 RNASE13Q5GAN3 156 aaKnown RBP9.15□□□□□ -0.94
PNKP-223ENST00000629179 SDIM1Q6ZPB5 146 aa9.15□□□□□ -0.94
PNKP-223ENST00000629179 TMEM136Q6ZRR5 245 aa9.15□□□□□ -0.94
PNKP-223ENST00000629179 ORMDL3Q8N138 153 aa9.15□□□□□ -0.94
PNKP-223ENST00000629179 PHOX2AO14813 284 aa9.14□□□□□ -0.95
PNKP-223ENST00000629179 TCAPO15273 167 aa9.14□□□□□ -0.95
PNKP-223ENST00000629179 RPL39P62891 51 aaKnown RBP9.14□□□□□ -0.95
PNKP-223ENST00000629179 SS18Q15532 418 aa9.14□□□□□ -0.95
PNKP-223ENST00000629179 LINC00528Q8N1L1 170 aa9.14□□□□□ -0.95
PNKP-223ENST00000629179 PRELID3AQ96N28 172 aa9.14□□□□□ -0.95
PNKP-223ENST00000629179 CSDC2Q9Y534 153 aaKnown RBP9.14□□□□□ -0.95
PNKP-223ENST00000629179 VPS13BQ7Z7G8 4022 aa9.14□□□□□ -0.95
PNKP-223ENST00000629179 SMAGPQ0VAQ4 97 aa9.13□□□□□ -0.95
PNKP-223ENST00000629179 TMEM18Q96B42 140 aa9.13□□□□□ -0.95
PNKP-223ENST00000629179 TRAV16A0A0A6YYK6 109 aaPredicted RBP9.12□□□□□ -0.95
PNKP-223ENST00000629179 PANO1I0J062 215 aa9.12□□□□□ -0.95
PNKP-223ENST00000629179 Q6ZUT4 128 aa9.12□□□□□ -0.95
PNKP-223ENST00000629179 TIMM21Q9BVV7 248 aa9.12□□□□□ -0.95
PNKP-223ENST00000629179 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP9.12□□□□□ -0.95
PNKP-223ENST00000629179 IGHV3-64A0A075B6Q5 118 aa9.11□□□□□ -0.95
PNKP-223ENST00000629179 CD164L2Q6UWJ8 174 aa9.11□□□□□ -0.95
PNKP-223ENST00000629179 SEC11CQ9BY50 192 aa9.11□□□□□ -0.95
PNKP-223ENST00000629179 GVQW2A0A096LPI5 108 aaPredicted RBP9.1□□□□□ -0.95
PNKP-223ENST00000629179 TRAV13-1A0A0B4J241 112 aa9.1□□□□□ -0.95
PNKP-223ENST00000629179 LOC389332A0A1B0GUA5 103 aa9.1□□□□□ -0.95
PNKP-223ENST00000629179 C1orf196B1AJZ1 125 aa9.1□□□□□ -0.95
PNKP-223ENST00000629179 PLA2G1BP04054 148 aaKnown RBP9.1□□□□□ -0.95
PNKP-223ENST00000629179 FAM104AQ969W3 186 aa9.1□□□□□ -0.95
PNKP-223ENST00000629179 LINC00526Q96FQ7 95 aa9.1□□□□□ -0.95
PNKP-223ENST00000629179 IMMP2LQ96T52 175 aa9.1□□□□□ -0.95
PNKP-223ENST00000629179 OPRPNQ99935 248 aaPredicted RBP9.1□□□□□ -0.95
PNKP-223ENST00000629179 IGHV1-58A0A0C4DH39 117 aa9.09□□□□□ -0.95
PNKP-223ENST00000629179 PRSS47A8MTI9 375 aa9.09□□□□□ -0.95
PNKP-223ENST00000629179 RAB5AP20339 215 aa9.09□□□□□ -0.95
PNKP-223ENST00000629179 CTDSP1Q9GZU7 261 aa9.09□□□□□ -0.95
PNKP-223ENST00000629179 LAMTOR2Q9Y2Q5 125 aa9.09□□□□□ -0.95
PNKP-223ENST00000629179 CHTF8P0CG12 524 aa9.08□□□□□ -0.96
PNKP-223ENST00000629179 SVBPQ8N300 66 aa9.08□□□□□ -0.96
PNKP-223ENST00000629179 MAP1LC3AQ9H492 121 aa9.08□□□□□ -0.96
PNKP-223ENST00000629179 SPANXA1Q9NS26 97 aa9.08□□□□□ -0.96
PNKP-223ENST00000629179 COX6A2Q02221 97 aa9.07□□□□□ -0.96
PNKP-223ENST00000629179 DPH3Q96FX2 82 aa9.07□□□□□ -0.96
PNKP-223ENST00000629179 DMBT1Q9UGM3 2413 aaPredicted RBP9.07□□□□□ -0.96
PNKP-223ENST00000629179 COX7A2LO14548 114 aa9.06□□□□□ -0.96
PNKP-223ENST00000629179 SNAPINO95295 136 aa9.06□□□□□ -0.96
PNKP-223ENST00000629179 MRPS36P82909 103 aaKnown RBP9.06□□□□□ -0.96
PNKP-223ENST00000629179 CIRBPQ14011 172 aaKnown RBP9.06□□□□□ -0.96
PNKP-223ENST00000629179 KIAA1644Q3SXP7 199 aa9.06□□□□□ -0.96
PNKP-223ENST00000629179 C5orf38Q86SI9 138 aa9.06□□□□□ -0.96
PNKP-223ENST00000629179 Q8N8P6 123 aa9.06□□□□□ -0.96
PNKP-223ENST00000629179 PRSS3P2Q8NHM4 247 aa9.06□□□□□ -0.96
PNKP-223ENST00000629179 APOC3P02656 99 aa9.05□□□□□ -0.96
PNKP-223ENST00000629179 MALP21145 153 aa9.05□□□□□ -0.96
PNKP-223ENST00000629179 KRTAP10-4P60372 401 aaPredicted RBP9.05□□□□□ -0.96
PNKP-223ENST00000629179 C10orf91Q5T1B1 145 aa9.05□□□□□ -0.96
PNKP-223ENST00000629179 CARHSP1Q9Y2V2 147 aaKnown RBP9.05□□□□□ -0.96
PNKP-223ENST00000629179 TRAV9-1A0A075B6T8 112 aa9.04□□□□□ -0.96
PNKP-223ENST00000629179 ZNF561-AS1K7EIQ3 104 aa9.04□□□□□ -0.96
PNKP-223ENST00000629179 A0A087WYN8 130 aa9.03□□□□□ -0.96
PNKP-223ENST00000629179 IFITM10A6NMD0 228 aa9.03□□□□□ -0.96
PNKP-223ENST00000629179 S100PP25815 95 aa9.03□□□□□ -0.96
PNKP-223ENST00000629179 IFI27P40305 119 aaPredicted RBP9.03□□□□□ -0.96
PNKP-223ENST00000629179 SPACA4Q8TDM5 124 aa9.03□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 166.5 ms