RNA–Protein interactions for RNA: ENST00000611659.4

TPM3-223, Transcript of tropomyosin 3, humanhuman

TSL 3 BASIC

Gene TPM3, Length 3,149 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-223ENST00000611659 CACNA1AO00555 2505 aa8.64□□□□□ -1.03
TPM3-223ENST00000611659 IGHV4-59P01825 116 aa8.64□□□□□ -1.03
TPM3-223ENST00000611659 GAGE2AQ6NT46 116 aa8.64□□□□□ -1.03
TPM3-223ENST00000611659 HOXD3P31249 432 aaPredicted RBP8.64□□□□□ -1.03
TPM3-223ENST00000611659 PPDPFQ9H3Y8 114 aa8.64□□□□□ -1.03
TPM3-223ENST00000611659 Q9HAA7 133 aa8.64□□□□□ -1.03
TPM3-223ENST00000611659 AVPP01185 164 aa8.63□□□□□ -1.03
TPM3-223ENST00000611659 ZNF415Q09FC8 603 aa8.63□□□□□ -1.03
TPM3-223ENST00000611659 LINC00643Q86TS7 51 aa8.63□□□□□ -1.03
TPM3-223ENST00000611659 ZANQ9Y493 2812 aa8.63□□□□□ -1.03
TPM3-223ENST00000611659 IGHV3OR16-12A0A075B7B8 117 aa8.63□□□□□ -1.03
TPM3-223ENST00000611659 PIK3CD-AS1Q5SR53 167 aa8.63□□□□□ -1.03
TPM3-223ENST00000611659 NRGNQ92686 78 aa8.63□□□□□ -1.03
TPM3-223ENST00000611659 IMUPQ9GZP8 106 aa8.63□□□□□ -1.03
TPM3-223ENST00000611659 FAM208BQ5VWN6 2430 aa8.62□□□□□ -1.03
TPM3-223ENST00000611659 RS1O15537 224 aa8.62□□□□□ -1.03
TPM3-223ENST00000611659 LINC00694P0DN24 101 aa8.62□□□□□ -1.03
TPM3-223ENST00000611659 TIRAPP58753 221 aa8.62□□□□□ -1.03
TPM3-223ENST00000611659 FAM218AQ96MZ4 157 aa8.62□□□□□ -1.03
TPM3-223ENST00000611659 EDA2RQ9HAV5 297 aa8.62□□□□□ -1.03
TPM3-223ENST00000611659 HERVK_113P63121 156 aa8.62□□□□□ -1.03
TPM3-223ENST00000611659 LINC00242Q5T6M2 205 aa8.62□□□□□ -1.03
TPM3-223ENST00000611659 C2CD3Q4AC94 2353 aa8.62□□□□□ -1.03
TPM3-223ENST00000611659 PKD1L2Q7Z442 2459 aa8.62□□□□□ -1.03
TPM3-223ENST00000611659 CFAP46Q8IYW2 2715 aa8.62□□□□□ -1.03
TPM3-223ENST00000611659 IGHV4-30-2A0A087WSY4 118 aa8.61□□□□□ -1.03
TPM3-223ENST00000611659 MSMBP08118 114 aa8.61□□□□□ -1.03
TPM3-223ENST00000611659 DEFB136Q30KP8 78 aa8.61□□□□□ -1.03
TPM3-223ENST00000611659 C3orf22Q8N5N4 141 aa8.61□□□□□ -1.03
TPM3-223ENST00000611659 MAPK1IP1LQ8NDC0 245 aa8.61□□□□□ -1.03
TPM3-223ENST00000611659 VPREB3Q9UKI3 123 aa8.61□□□□□ -1.03
TPM3-223ENST00000611659 ZFYVE26Q68DK2 2539 aa8.61□□□□□ -1.03
TPM3-223ENST00000611659 RBMY1BA6NDE4 496 aaKnown RBP8.61□□□□□ -1.03
TPM3-223ENST00000611659 RBMY1EA6NEQ0 496 aaKnown RBP8.61□□□□□ -1.03
TPM3-223ENST00000611659 RBMY1DP0C7P1 496 aaKnown RBP8.61□□□□□ -1.03
TPM3-223ENST00000611659 UCNP55089 124 aa8.61□□□□□ -1.03
TPM3-223ENST00000611659 KLK5Q9Y337 293 aaPredicted RBP8.61□□□□□ -1.03
TPM3-223ENST00000611659 MYO18BQ8IUG5 2567 aa8.61□□□□□ -1.03
TPM3-223ENST00000611659 IGHV3-53P01767 116 aa8.6□□□□□ -1.03
TPM3-223ENST00000611659 NOTCH3Q9UM47 2321 aa8.6□□□□□ -1.03
TPM3-223ENST00000611659 ACACBO00763 2458 aa8.6□□□□□ -1.03
TPM3-223ENST00000611659 ATP5J2P56134 94 aa8.6□□□□□ -1.03
TPM3-223ENST00000611659 CCL19Q99731 98 aa8.6□□□□□ -1.03
TPM3-223ENST00000611659 IGLV5-45A0A087WSX0 123 aa8.6□□□□□ -1.03
TPM3-223ENST00000611659 SMIM1B2RUZ4 78 aa8.6□□□□□ -1.03
TPM3-223ENST00000611659 DEFB112Q30KQ8 113 aa8.6□□□□□ -1.03
TPM3-223ENST00000611659 COPS9Q8WXC6 57 aa8.6□□□□□ -1.03
TPM3-223ENST00000611659 USP9XQ93008 2570 aaPredicted RBP8.6□□□□□ -1.03
TPM3-223ENST00000611659 C10orf105Q8TEF2 133 aa8.59□□□□□ -1.03
TPM3-223ENST00000611659 IGLV5-39A0A0G2JS06 123 aa8.59□□□□□ -1.03
TPM3-223ENST00000611659 UQCRQO14949 82 aa8.59□□□□□ -1.03
TPM3-223ENST00000611659 TRACP01848 142 aa8.59□□□□□ -1.03
TPM3-223ENST00000611659 SLURP1P55000 103 aa8.59□□□□□ -1.03
TPM3-223ENST00000611659 LOC107984640A0A0U1RRK4 108 aa8.58□□□□□ -1.04
TPM3-223ENST00000611659 DNAJC30Q96LL9 226 aa8.58□□□□□ -1.04
TPM3-223ENST00000611659 BEAN1Q3B7T3 259 aa8.58□□□□□ -1.04
TPM3-223ENST00000611659 HIST2H2BDQ6DRA6 164 aa8.58□□□□□ -1.04
TPM3-223ENST00000611659 INAFM2P0DMQ5 153 aa8.57□□□□□ -1.04
TPM3-223ENST00000611659 PEMTQ9UBM1 199 aa8.57□□□□□ -1.04
TPM3-223ENST00000611659 C18orf65Q6ZTR6 163 aa8.57□□□□□ -1.04
TPM3-223ENST00000611659 TOMM7Q9P0U1 55 aa8.57□□□□□ -1.04
TPM3-223ENST00000611659 TLN2Q9Y4G6 2542 aa8.56□□□□□ -1.04
TPM3-223ENST00000611659 TRGV1A0A0A0MS02 117 aa8.56□□□□□ -1.04
TPM3-223ENST00000611659 IGKV3OR2-268A0A0C4DH90 116 aa8.56□□□□□ -1.04
TPM3-223ENST00000611659 DNAL4O96015 105 aa8.56□□□□□ -1.04
TPM3-223ENST00000611659 MALP21145 153 aa8.56□□□□□ -1.04
TPM3-223ENST00000611659 SDIM1Q6ZPB5 146 aa8.56□□□□□ -1.04
TPM3-223ENST00000611659 XCL2Q9UBD3 114 aa8.56□□□□□ -1.04
TPM3-223ENST00000611659 C22orf24Q9Y442 160 aa8.56□□□□□ -1.04
TPM3-223ENST00000611659 CRPP02741 224 aa8.56□□□□□ -1.04
TPM3-223ENST00000611659 HIST2H2BCQ6DN03 193 aa8.56□□□□□ -1.04
TPM3-223ENST00000611659 C11orf72Q8NBR9 251 aa8.56□□□□□ -1.04
TPM3-223ENST00000611659 TMEM89A2RUT3 159 aa8.56□□□□□ -1.04
TPM3-223ENST00000611659 KHDC1LQ5JSQ8 128 aa8.56□□□□□ -1.04
TPM3-223ENST00000611659 LINC00526Q96FQ7 95 aa8.56□□□□□ -1.04
TPM3-223ENST00000611659 RNF152Q8N8N0 203 aa8.55□□□□□ -1.04
TPM3-223ENST00000611659 UBE2E2Q96LR5 201 aa8.55□□□□□ -1.04
TPM3-223ENST00000611659 C14orf132Q9NPU4 83 aa8.55□□□□□ -1.04
TPM3-223ENST00000611659 IGKV3D-7A0A0C4DH55 119 aa8.55□□□□□ -1.04
TPM3-223ENST00000611659 MIR7-3HGQ8N6C7 128 aa8.54□□□□□ -1.04
TPM3-223ENST00000611659 B4DSR2 109 aa8.54□□□□□ -1.04
TPM3-223ENST00000611659 INSP01308 110 aa8.54□□□□□ -1.04
TPM3-223ENST00000611659 COX7CP15954 63 aa8.54□□□□□ -1.04
TPM3-223ENST00000611659 SETD2Q9BYW2 2564 aaPredicted RBP8.53□□□□□ -1.04
TPM3-223ENST00000611659 A0A087WYN8 130 aa8.53□□□□□ -1.04
TPM3-223ENST00000611659 TRAV13-2A0A0B4J235 113 aa8.53□□□□□ -1.04
TPM3-223ENST00000611659 ATP5G1P05496 136 aa8.53□□□□□ -1.04
TPM3-223ENST00000611659 RPL36AP83881 106 aaKnown RBP8.53□□□□□ -1.04
TPM3-223ENST00000611659 C9orf129Q5T035 196 aaKnown RBP8.53□□□□□ -1.04
TPM3-223ENST00000611659 C5orf38Q86SI9 138 aa8.53□□□□□ -1.04
TPM3-223ENST00000611659 LINC00337Q8N6G1 96 aa8.53□□□□□ -1.04
TPM3-223ENST00000611659 PIEZO1Q92508 2521 aa8.53□□□□□ -1.04
TPM3-223ENST00000611659 RPL36ALQ969Q0 106 aaKnown RBP8.53□□□□□ -1.04
TPM3-223ENST00000611659 PRORYQ9H606 182 aa8.53□□□□□ -1.04
TPM3-223ENST00000611659 hADV29S1A0JD25 119 aa8.53□□□□□ -1.04
TPM3-223ENST00000611659 CXCL5P42830 114 aa8.53□□□□□ -1.04
TPM3-223ENST00000611659 NTM-AS1Q6ZSK4 140 aa8.53□□□□□ -1.04
TPM3-223ENST00000611659 DYNLRB2Q8TF09 96 aa8.53□□□□□ -1.04
TPM3-223ENST00000611659 Q96MF0 132 aa8.53□□□□□ -1.04
TPM3-223ENST00000611659 MAP6D1Q9H9H5 199 aa8.53□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 72.7 ms