RNA–Protein interactions for RNA: ENST00000597172.5

TRIM28-208, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 577 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-208ENST00000597172 TMEM243Q9BU79 118 aa6.43□□□□□ -1.38
TRIM28-208ENST00000597172 C5orf52A6NGY3 159 aa6.42□□□□□ -1.38
TRIM28-208ENST00000597172 HSBP1O75506 76 aa6.42□□□□□ -1.38
TRIM28-208ENST00000597172 BTF3P20290 206 aaKnown RBP6.42□□□□□ -1.38
TRIM28-208ENST00000597172 GAGE6Q13070 117 aa6.42□□□□□ -1.38
TRIM28-208ENST00000597172 PDZD11Q5EBL8 140 aa6.42□□□□□ -1.38
TRIM28-208ENST00000597172 C2orf66Q6UXQ4 117 aa6.42□□□□□ -1.38
TRIM28-208ENST00000597172 FAM104AQ969W3 186 aa6.42□□□□□ -1.38
TRIM28-208ENST00000597172 TOMM6Q96B49 74 aa6.42□□□□□ -1.38
TRIM28-208ENST00000597172 IFITM10A6NMD0 228 aa6.41□□□□□ -1.38
TRIM28-208ENST00000597172 S100A6P06703 90 aa6.41□□□□□ -1.38
TRIM28-208ENST00000597172 CCL18P55774 89 aa6.41□□□□□ -1.38
TRIM28-208ENST00000597172 SERTAD4-AS1Q5TG53 156 aa6.41□□□□□ -1.38
TRIM28-208ENST00000597172 HIST3H2BBQ8N257 126 aa6.41□□□□□ -1.38
TRIM28-208ENST00000597172 Q8N3U1 123 aa6.41□□□□□ -1.38
TRIM28-208ENST00000597172 CHCHD5Q9BSY4 110 aa6.41□□□□□ -1.38
TRIM28-208ENST00000597172 MRPS16Q9Y3D3 137 aaKnown RBP6.41□□□□□ -1.38
TRIM28-208ENST00000597172 TRAV8-6A0A0B4J262 113 aa6.4□□□□□ -1.38
TRIM28-208ENST00000597172 IGIPA6NJ69 53 aa6.4□□□□□ -1.38
TRIM28-208ENST00000597172 H7C423 109 aa6.4□□□□□ -1.38
TRIM28-208ENST00000597172 HBDP02042 147 aa6.4□□□□□ -1.38
TRIM28-208ENST00000597172 FGF6P10767 208 aa6.4□□□□□ -1.38
TRIM28-208ENST00000597172 LINC00173Q6ZV60 143 aa6.4□□□□□ -1.38
TRIM28-208ENST00000597172 MRPL52Q86TS9 123 aaKnown RBP6.4□□□□□ -1.38
TRIM28-208ENST00000597172 WFDC10BQ8IUB3 73 aa6.4□□□□□ -1.38
TRIM28-208ENST00000597172 OPRPNQ99935 248 aaPredicted RBP6.4□□□□□ -1.38
TRIM28-208ENST00000597172 UPK3BQ9BT76 320 aa6.4□□□□□ -1.38
TRIM28-208ENST00000597172 CYSLTR1Q9Y271 337 aa6.4□□□□□ -1.38
TRIM28-208ENST00000597172 UBE2D4Q9Y2X8 147 aa6.4□□□□□ -1.38
TRIM28-208ENST00000597172 IGLV4-60A0A075B6I1 120 aa6.39□□□□□ -1.39
TRIM28-208ENST00000597172 TMEM262E9PQX1 116 aa6.39□□□□□ -1.39
TRIM28-208ENST00000597172 G0S2P27469 103 aa6.39□□□□□ -1.39
TRIM28-208ENST00000597172 MPV17L2Q567V2 206 aa6.39□□□□□ -1.39
TRIM28-208ENST00000597172 TMEM18Q96B42 140 aa6.39□□□□□ -1.39
TRIM28-208ENST00000597172 SCGB3A1Q96QR1 104 aa6.39□□□□□ -1.39
TRIM28-208ENST00000597172 TIMM21Q9BVV7 248 aa6.39□□□□□ -1.39
TRIM28-208ENST00000597172 PYGO1Q9Y3Y4 419 aa6.39□□□□□ -1.39
TRIM28-208ENST00000597172 A0A1B0GUV1 79 aa6.38□□□□□ -1.39
TRIM28-208ENST00000597172 UBE2L6O14933 153 aa6.38□□□□□ -1.39
TRIM28-208ENST00000597172 FABP4P15090 132 aa6.38□□□□□ -1.39
TRIM28-208ENST00000597172 RBX1P62877 108 aa6.38□□□□□ -1.39
TRIM28-208ENST00000597172 ERASQ7Z444 233 aa6.38□□□□□ -1.39
TRIM28-208ENST00000597172 Q8N976 141 aa6.38□□□□□ -1.39
TRIM28-208ENST00000597172 PACRGQ96M98 296 aaPredicted RBP6.38□□□□□ -1.39
TRIM28-208ENST00000597172 Q9H8V8 135 aa6.38□□□□□ -1.39
TRIM28-208ENST00000597172 CDC42SE2Q9NRR3 84 aa6.38□□□□□ -1.39
TRIM28-208ENST00000597172 CSDC2Q9Y534 153 aaKnown RBP6.38□□□□□ -1.39
TRIM28-208ENST00000597172 IGLV4-3A0A075B6K6 122 aa6.37□□□□□ -1.39
TRIM28-208ENST00000597172 SIVA1O15304 175 aa6.37□□□□□ -1.39
TRIM28-208ENST00000597172 LEPROTL1O95214 131 aa6.37□□□□□ -1.39
TRIM28-208ENST00000597172 IGHV3-30P01768 117 aa6.37□□□□□ -1.39
TRIM28-208ENST00000597172 IGHV3-33P01772 117 aa6.37□□□□□ -1.39
TRIM28-208ENST00000597172 DNAH10OSP0CZ25 163 aa6.37□□□□□ -1.39
TRIM28-208ENST00000597172 IGHV3-30-3P0DP02 117 aa6.37□□□□□ -1.39
TRIM28-208ENST00000597172 IGHV3-30-5P0DP03 117 aa6.37□□□□□ -1.39
TRIM28-208ENST00000597172 ZC2HC1BQ5TFG8 222 aa6.37□□□□□ -1.39
TRIM28-208ENST00000597172 AMMECR1LQ6DCA0 310 aa6.37□□□□□ -1.39
TRIM28-208ENST00000597172 ZNF664Q8N3J9 261 aa6.37□□□□□ -1.39
TRIM28-208ENST00000597172 TMEM141Q96I45 108 aa6.37□□□□□ -1.39
TRIM28-208ENST00000597172 TIMM17AQ99595 171 aa6.37□□□□□ -1.39
TRIM28-208ENST00000597172 HIST1H2BLQ99880 126 aa6.37□□□□□ -1.39
TRIM28-208ENST00000597172 SPANXA1Q9NS26 97 aa6.37□□□□□ -1.39
TRIM28-208ENST00000597172 A0A087WX48 190 aa6.36□□□□□ -1.39
TRIM28-208ENST00000597172 LINC01549A6NIU2 74 aa6.36□□□□□ -1.39
TRIM28-208ENST00000597172 ZNF25P17030 456 aaPredicted RBP6.36□□□□□ -1.39
TRIM28-208ENST00000597172 MRPS36P82909 103 aaKnown RBP6.36□□□□□ -1.39
TRIM28-208ENST00000597172 RNASE13Q5GAN3 156 aaKnown RBP6.36□□□□□ -1.39
TRIM28-208ENST00000597172 LINC01556Q5JQF7 62 aa6.36□□□□□ -1.39
TRIM28-208ENST00000597172 Q6ZUT4 128 aa6.36□□□□□ -1.39
TRIM28-208ENST00000597172 UBE2DNLQ8IWF7 75 aa6.36□□□□□ -1.39
TRIM28-208ENST00000597172 IFI27L1Q96BM0 104 aa6.36□□□□□ -1.39
TRIM28-208ENST00000597172 AMELXQ99217 191 aa6.36□□□□□ -1.39
TRIM28-208ENST00000597172 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP6.35□□□□□ -1.39
TRIM28-208ENST00000597172 ATP5LO75964 103 aa6.35□□□□□ -1.39
TRIM28-208ENST00000597172 NPSP0C0P6 89 aa6.35□□□□□ -1.39
TRIM28-208ENST00000597172 S100A2P29034 98 aa6.35□□□□□ -1.39
TRIM28-208ENST00000597172 PKIAP61925 76 aa6.35□□□□□ -1.39
TRIM28-208ENST00000597172 SMAGPQ0VAQ4 97 aa6.35□□□□□ -1.39
TRIM28-208ENST00000597172 DGAT2L7PQ6IED9 249 aa6.35□□□□□ -1.39
TRIM28-208ENST00000597172 OR5A1Q8NGJ0 315 aa6.35□□□□□ -1.39
TRIM28-208ENST00000597172 BAALCQ8WXS3 180 aa6.35□□□□□ -1.39
TRIM28-208ENST00000597172 TMEM101Q96IK0 257 aa6.35□□□□□ -1.39
TRIM28-208ENST00000597172 HSPB8Q9UJY1 196 aa6.35□□□□□ -1.39
TRIM28-208ENST00000597172 PLA2G2DQ9UNK4 145 aa6.35□□□□□ -1.39
TRIM28-208ENST00000597172 C3orf79P0CE67 100 aa6.34□□□□□ -1.39
TRIM28-208ENST00000597172 C1orf134Q5TEV5 83 aa6.34□□□□□ -1.39
TRIM28-208ENST00000597172 ENHOQ6UWT2 76 aa6.34□□□□□ -1.39
TRIM28-208ENST00000597172 Q6ZR54 194 aa6.34□□□□□ -1.39
TRIM28-208ENST00000597172 SPATA12Q7Z6I5 190 aa6.34□□□□□ -1.39
TRIM28-208ENST00000597172 LINC00269Q8N2A0 174 aa6.34□□□□□ -1.39
TRIM28-208ENST00000597172 VCX2Q9H322 139 aa6.34□□□□□ -1.39
TRIM28-208ENST00000597172 CST9LQ9H4G1 147 aa6.34□□□□□ -1.39
TRIM28-208ENST00000597172 KLK12Q9UKR0 248 aa6.34□□□□□ -1.39
TRIM28-208ENST00000597172 KRTAP9-6A0A140TA67 174 aa6.33□□□□□ -1.4
TRIM28-208ENST00000597172 ANGP03950 147 aaKnown RBP6.33□□□□□ -1.4
TRIM28-208ENST00000597172 PRSS1P07477 247 aa6.33□□□□□ -1.4
TRIM28-208ENST00000597172 TNP2Q05952 138 aa6.33□□□□□ -1.4
TRIM28-208ENST00000597172 Q5VSD8 79 aa6.33□□□□□ -1.4
TRIM28-208ENST00000597172 KRTAP1-5Q9BYS1 174 aa6.33□□□□□ -1.4
TRIM28-208ENST00000597172 PRR34Q9NV39 138 aa6.33□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 64.3 ms