RNA–Protein interactions for RNA: ENST00000597146.1

LIG1-214, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 589 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-214ENST00000597146 CHTF8P0CG12 524 aa9.77□□□□□ -0.85
LIG1-214ENST00000597146 FCER1GP30273 86 aa9.77□□□□□ -0.85
LIG1-214ENST00000597146 AMN1Q8IY45 258 aa9.77□□□□□ -0.85
LIG1-214ENST00000597146 IGKV2D-29A0A075B6S2 120 aaPredicted RBP9.76□□□□□ -0.85
LIG1-214ENST00000597146 TRBV6-5A0A0K0K1A5 114 aa9.76□□□□□ -0.85
LIG1-214ENST00000597146 IGKV2-29A2NJV5 120 aaPredicted RBP9.76□□□□□ -0.85
LIG1-214ENST00000597146 VCYO14598 125 aa9.76□□□□□ -0.85
LIG1-214ENST00000597146 S100A8P05109 93 aa9.76□□□□□ -0.85
LIG1-214ENST00000597146 DGAT2L7PQ6IED9 249 aa9.76□□□□□ -0.85
LIG1-214ENST00000597146 AP5S1Q9NUS5 200 aa9.76□□□□□ -0.85
LIG1-214ENST00000597146 A0A087WYN8 130 aa9.75□□□□□ -0.85
LIG1-214ENST00000597146 A0A1B0GW15 77 aa9.75□□□□□ -0.85
LIG1-214ENST00000597146 FGF6P10767 208 aa9.75□□□□□ -0.85
LIG1-214ENST00000597146 CFAP161Q6P656 301 aa9.75□□□□□ -0.85
LIG1-214ENST00000597146 CLRN3Q8NCR9 226 aa9.75□□□□□ -0.85
LIG1-214ENST00000597146 DPH3Q96FX2 82 aa9.75□□□□□ -0.85
LIG1-214ENST00000597146 SMIM27A0A1W2PRY6 76 aa9.74□□□□□ -0.85
LIG1-214ENST00000597146 hDV102S1A0JD36 115 aa9.74□□□□□ -0.85
LIG1-214ENST00000597146 F8W036 122 aa9.74□□□□□ -0.85
LIG1-214ENST00000597146 SMKR1H3BMG3 65 aa9.74□□□□□ -0.85
LIG1-214ENST00000597146 SMAGPQ0VAQ4 97 aa9.74□□□□□ -0.85
LIG1-214ENST00000597146 OR5A1Q8NGJ0 315 aa9.74□□□□□ -0.85
LIG1-214ENST00000597146 RNF185Q96GF1 192 aa9.74□□□□□ -0.85
LIG1-214ENST00000597146 TMEM242Q9NWH2 141 aa9.74□□□□□ -0.85
LIG1-214ENST00000597146 GAGE12HA6NDE8 117 aa9.73□□□□□ -0.85
LIG1-214ENST00000597146 PPP1R2P9O14990 202 aa9.73□□□□□ -0.85
LIG1-214ENST00000597146 CKS2P33552 79 aa9.73□□□□□ -0.85
LIG1-214ENST00000597146 KIR2DL4Q99706 377 aa9.73□□□□□ -0.85
LIG1-214ENST00000597146 ZNF25P17030 456 aaPredicted RBP9.72□□□□□ -0.85
LIG1-214ENST00000597146 PRR3P79522 188 aaKnown RBP9.72□□□□□ -0.85
LIG1-214ENST00000597146 FAM104BQ5XKR9 115 aa9.72□□□□□ -0.85
LIG1-214ENST00000597146 MRPL54Q6P161 138 aaKnown RBP9.72□□□□□ -0.85
LIG1-214ENST00000597146 TRAV16A0A0A6YYK6 109 aaPredicted RBP9.71□□□□□ -0.86
LIG1-214ENST00000597146 TSHBP01222 138 aa9.71□□□□□ -0.86
LIG1-214ENST00000597146 RPS10P46783 165 aaKnown RBP9.71□□□□□ -0.86
LIG1-214ENST00000597146 MRPL51Q4U2R6 128 aaKnown RBP9.71□□□□□ -0.86
LIG1-214ENST00000597146 SPACA4Q8TDM5 124 aa9.71□□□□□ -0.86
LIG1-214ENST00000597146 LINC00862A6NCI5 91 aa9.7□□□□□ -0.86
LIG1-214ENST00000597146 MT-ND4LP03901 98 aa9.7□□□□□ -0.86
LIG1-214ENST00000597146 POLR2KP53803 58 aaKnown RBP9.7□□□□□ -0.86
LIG1-214ENST00000597146 SUMO2P61956 95 aaKnown RBP9.7□□□□□ -0.86
LIG1-214ENST00000597146 HBBP68871 147 aa9.7□□□□□ -0.86
LIG1-214ENST00000597146 SS18Q15532 418 aa9.7□□□□□ -0.86
LIG1-214ENST00000597146 KRTAP26-1Q6PEX3 210 aa9.7□□□□□ -0.86
LIG1-214ENST00000597146 C7orf33Q8WU49 177 aa9.7□□□□□ -0.86
LIG1-214ENST00000597146 TMEM18Q96B42 140 aa9.7□□□□□ -0.86
LIG1-214ENST00000597146 TRBV27A0A0K0K1C4 114 aa9.69□□□□□ -0.86
LIG1-214ENST00000597146 C7orf77A4D0Y5 90 aa9.69□□□□□ -0.86
LIG1-214ENST00000597146 CHCHD10Q8WYQ3 142 aaPredicted RBP9.69□□□□□ -0.86
LIG1-214ENST00000597146 ESDP10768 282 aa9.68□□□□□ -0.86
LIG1-214ENST00000597146 PNRC1Q12796 327 aaPredicted RBP9.68□□□□□ -0.86
LIG1-214ENST00000597146 LCE2AQ5TA79 106 aaPredicted RBP9.68□□□□□ -0.86
LIG1-214ENST00000597146 PLAC8Q9NZF1 115 aa9.68□□□□□ -0.86
LIG1-214ENST00000597146 TCAPO15273 167 aa9.67□□□□□ -0.86
LIG1-214ENST00000597146 XCL1P47992 114 aa9.67□□□□□ -0.86
LIG1-214ENST00000597146 REG3GQ6UW15 175 aa9.67□□□□□ -0.86
LIG1-214ENST00000597146 ZNF664Q8N3J9 261 aa9.67□□□□□ -0.86
LIG1-214ENST00000597146 ANAPC16Q96DE5 110 aa9.67□□□□□ -0.86
LIG1-214ENST00000597146 C20orf78Q9BR46 151 aa9.67□□□□□ -0.86
LIG1-214ENST00000597146 IGHV3-64A0A075B6Q5 118 aa9.66□□□□□ -0.86
LIG1-214ENST00000597146 A0A0U1RQV1 116 aa9.66□□□□□ -0.86
LIG1-214ENST00000597146 TNFRSF6BO95407 300 aa9.66□□□□□ -0.86
LIG1-214ENST00000597146 CNBPP62633 177 aaKnown RBP9.66□□□□□ -0.86
LIG1-214ENST00000597146 NRACQ8N912 160 aa9.66□□□□□ -0.86
LIG1-214ENST00000597146 LINC00959A0A1B0GUT2 108 aa9.65□□□□□ -0.86
LIG1-214ENST00000597146 D6R8Y8 96 aa9.65□□□□□ -0.86
LIG1-214ENST00000597146 CCL25O15444 150 aa9.65□□□□□ -0.86
LIG1-214ENST00000597146 PPBPP02775 128 aa9.65□□□□□ -0.86
LIG1-214ENST00000597146 RAB5AP20339 215 aa9.65□□□□□ -0.86
LIG1-214ENST00000597146 CLLU1Q5K131 121 aa9.65□□□□□ -0.86
LIG1-214ENST00000597146 HIGD2BQ4VC39 106 aa9.64□□□□□ -0.87
LIG1-214ENST00000597146 TMEM136Q6ZRR5 245 aa9.64□□□□□ -0.87
LIG1-214ENST00000597146 ATP5L2Q7Z4Y8 100 aa9.64□□□□□ -0.87
LIG1-214ENST00000597146 MRPL52Q86TS9 123 aaKnown RBP9.64□□□□□ -0.87
LIG1-214ENST00000597146 CDC42SE2Q9NRR3 84 aa9.64□□□□□ -0.87
LIG1-214ENST00000597146 TRBV24-1A0A075B6N3 115 aa9.63□□□□□ -0.87
LIG1-214ENST00000597146 SLPIP03973 132 aa9.63□□□□□ -0.87
LIG1-214ENST00000597146 SPINK6Q6UWN8 80 aa9.63□□□□□ -0.87
LIG1-214ENST00000597146 ORMDL3Q8N138 153 aa9.63□□□□□ -0.87
LIG1-214ENST00000597146 C1orf196B1AJZ1 125 aa9.62□□□□□ -0.87
LIG1-214ENST00000597146 MALP21145 153 aa9.62□□□□□ -0.87
LIG1-214ENST00000597146 PRELID3AQ96N28 172 aa9.62□□□□□ -0.87
LIG1-214ENST00000597146 TRAV13-1A0A0B4J241 112 aa9.61□□□□□ -0.87
LIG1-214ENST00000597146 A0A1B0GXF2 115 aa9.61□□□□□ -0.87
LIG1-214ENST00000597146 ZNF561-AS1K7EIQ3 104 aa9.61□□□□□ -0.87
LIG1-214ENST00000597146 SMIM2Q9BVW6 85 aa9.61□□□□□ -0.87
LIG1-214ENST00000597146 IGHV1-58A0A0C4DH39 117 aa9.6□□□□□ -0.87
LIG1-214ENST00000597146 LOC389332A0A1B0GUA5 103 aa9.6□□□□□ -0.87
LIG1-214ENST00000597146 NPYP01303 97 aa9.6□□□□□ -0.87
LIG1-214ENST00000597146 RPL32P62910 135 aaKnown RBP9.6□□□□□ -0.87
LIG1-214ENST00000597146 FOXI1Q12951 378 aa9.6□□□□□ -0.87
LIG1-214ENST00000597146 RNASE13Q5GAN3 156 aaKnown RBP9.6□□□□□ -0.87
LIG1-214ENST00000597146 UQCC3Q6UW78 93 aa9.6□□□□□ -0.87
LIG1-214ENST00000597146 CD164L2Q6UWJ8 174 aa9.6□□□□□ -0.87
LIG1-214ENST00000597146 UBE2D4Q9Y2X8 147 aa9.6□□□□□ -0.87
LIG1-214ENST00000597146 CSDC2Q9Y534 153 aaKnown RBP9.6□□□□□ -0.87
LIG1-214ENST00000597146 C15orf56Q8N910 161 aa9.59□□□□□ -0.87
LIG1-214ENST00000597146 IGKV2-24A0A0C4DH68 120 aa9.58□□□□□ -0.88
LIG1-214ENST00000597146 COX7A2LO14548 114 aa9.58□□□□□ -0.88
LIG1-214ENST00000597146 MAJINQ3KP22 176 aa9.58□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 153.5 ms