RNA–Protein interactions for RNA: ENST00000589219.1

VPS25-202, Transcript of vacuolar protein sorting 25 homolog, humanhuman

TSL 2

Gene VPS25, Length 914 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS25-202ENST00000589219 K7EP34 96 aa7.13□□□□□ -1.27
VPS25-202ENST00000589219 RPL35AP18077 110 aaKnown RBP7.13□□□□□ -1.27
VPS25-202ENST00000589219 EMP1P54849 157 aa7.13□□□□□ -1.27
VPS25-202ENST00000589219 C9orf66Q5T8R8 295 aa7.13□□□□□ -1.27
VPS25-202ENST00000589219 AMMECR1LQ6DCA0 310 aa7.13□□□□□ -1.27
VPS25-202ENST00000589219 Q6ZTI0 123 aa7.13□□□□□ -1.27
VPS25-202ENST00000589219 OVOL2Q9BRP0 275 aa7.13□□□□□ -1.27
VPS25-202ENST00000589219 WFDC10AQ9H1F0 79 aa7.13□□□□□ -1.27
VPS25-202ENST00000589219 NHP2Q9NX24 153 aaKnown RBP7.13□□□□□ -1.27
VPS25-202ENST00000589219 TINCRA0A1B0GVN0 87 aa7.12□□□□□ -1.27
VPS25-202ENST00000589219 A0A1W2PPM0 123 aa7.12□□□□□ -1.27
VPS25-202ENST00000589219 H3BUT2 72 aa7.12□□□□□ -1.27
VPS25-202ENST00000589219 J3QQQ9 107 aa7.12□□□□□ -1.27
VPS25-202ENST00000589219 FABP2P12104 132 aa7.12□□□□□ -1.27
VPS25-202ENST00000589219 LORP23490 312 aaPredicted RBP7.12□□□□□ -1.27
VPS25-202ENST00000589219 CSNK1G2-AS1Q8NCQ2 148 aa7.12□□□□□ -1.27
VPS25-202ENST00000589219 OR5A1Q8NGJ0 315 aa7.12□□□□□ -1.27
VPS25-202ENST00000589219 PHLDA1Q8WV24 401 aaPredicted RBP7.12□□□□□ -1.27
VPS25-202ENST00000589219 OPRPNQ99935 248 aaPredicted RBP7.12□□□□□ -1.27
VPS25-202ENST00000589219 IGKV2D-29A0A075B6S2 120 aaPredicted RBP7.11□□□□□ -1.27
VPS25-202ENST00000589219 A0A0J9YXV3 536 aa7.11□□□□□ -1.27
VPS25-202ENST00000589219 A0A0J9YY99 117 aa7.11□□□□□ -1.27
VPS25-202ENST00000589219 PLAC8L1A1L4L8 177 aa7.11□□□□□ -1.27
VPS25-202ENST00000589219 IGKV2-29A2NJV5 120 aaPredicted RBP7.11□□□□□ -1.27
VPS25-202ENST00000589219 GAGE10A6NGK3 116 aa7.11□□□□□ -1.27
VPS25-202ENST00000589219 TSPEAR-AS2P59090 65 aa7.11□□□□□ -1.27
VPS25-202ENST00000589219 UBE2D3P61077 147 aa7.11□□□□□ -1.27
VPS25-202ENST00000589219 UBE2D2P62837 147 aa7.11□□□□□ -1.27
VPS25-202ENST00000589219 Q6ZUT4 128 aa7.11□□□□□ -1.27
VPS25-202ENST00000589219 RAB37Q96AX2 223 aa7.11□□□□□ -1.27
VPS25-202ENST00000589219 ZNF479Q96JC4 524 aa7.11□□□□□ -1.27
VPS25-202ENST00000589219 NOP10Q9NPE3 64 aaKnown RBP7.11□□□□□ -1.27
VPS25-202ENST00000589219 IGHV3-38A0A0C4DH36 116 aa7.1□□□□□ -1.27
VPS25-202ENST00000589219 TRBV6-4A0A1B0GX49 114 aa7.1□□□□□ -1.27
VPS25-202ENST00000589219 K7EP13 123 aa7.1□□□□□ -1.27
VPS25-202ENST00000589219 C12orf74Q32Q52 190 aa7.1□□□□□ -1.27
VPS25-202ENST00000589219 C4orf48Q5BLP8 95 aa7.1□□□□□ -1.27
VPS25-202ENST00000589219 FAM104AQ969W3 186 aa7.1□□□□□ -1.27
VPS25-202ENST00000589219 CSDC2Q9Y534 153 aaKnown RBP7.1□□□□□ -1.27
VPS25-202ENST00000589219 SPCS1Q9Y6A9 102 aa7.1□□□□□ -1.27
VPS25-202ENST00000589219 TRGV2A0A075B6R0 118 aa7.09□□□□□ -1.27
VPS25-202ENST00000589219 K7ERJ3 54 aa7.09□□□□□ -1.27
VPS25-202ENST00000589219 SRSF9Q13242 221 aaKnown RBP eCLIP7.09□□□□□ -1.27
VPS25-202ENST00000589219 GTSF1LQ9H1H1 148 aa7.09□□□□□ -1.27
VPS25-202ENST00000589219 IGLV5-45A0A087WSX0 123 aa7.08□□□□□ -1.28
VPS25-202ENST00000589219 IGHV1-58A0A0C4DH39 117 aa7.08□□□□□ -1.28
VPS25-202ENST00000589219 GAGE12BA1L429 117 aa7.08□□□□□ -1.28
VPS25-202ENST00000589219 SMIM9A6NGZ8 99 aa7.08□□□□□ -1.28
VPS25-202ENST00000589219 IGLL5B9A064 214 aa7.08□□□□□ -1.28
VPS25-202ENST00000589219 TMEM238C9JI98 176 aa7.08□□□□□ -1.28
VPS25-202ENST00000589219 H7C423 109 aa7.08□□□□□ -1.28
VPS25-202ENST00000589219 GAGE7O76087 117 aa7.08□□□□□ -1.28
VPS25-202ENST00000589219 GAGE12FP0CL80 117 aa7.08□□□□□ -1.28
VPS25-202ENST00000589219 GAGE12GP0CL81 117 aa7.08□□□□□ -1.28
VPS25-202ENST00000589219 GAGE12IP0CL82 117 aa7.08□□□□□ -1.28
VPS25-202ENST00000589219 UBE2D1P51668 147 aa7.08□□□□□ -1.28
VPS25-202ENST00000589219 TIRAPP58753 221 aa7.08□□□□□ -1.28
VPS25-202ENST00000589219 DGAT2L7PQ6IED9 249 aa7.08□□□□□ -1.28
VPS25-202ENST00000589219 SLC25A29Q8N8R3 303 aa7.08□□□□□ -1.28
VPS25-202ENST00000589219 KIR2DL5BQ8NHK3 375 aa7.08□□□□□ -1.28
VPS25-202ENST00000589219 GEMIN7Q9H840 131 aaKnown RBP7.08□□□□□ -1.28
VPS25-202ENST00000589219 Q9UF83 564 aa7.08□□□□□ -1.28
VPS25-202ENST00000589219 NACAE9PAV3 2078 aa7.08□□□□□ -1.28
VPS25-202ENST00000589219 TRGV4A0A0C4DH28 118 aa7.07□□□□□ -1.28
VPS25-202ENST00000589219 GAGE12JA6NER3 117 aa7.07□□□□□ -1.28
VPS25-202ENST00000589219 GAGE4Q13068 117 aa7.07□□□□□ -1.28
VPS25-202ENST00000589219 GAGE5Q13069 117 aa7.07□□□□□ -1.28
VPS25-202ENST00000589219 GAGE13Q4V321 117 aa7.07□□□□□ -1.28
VPS25-202ENST00000589219 DEFB121Q5J5C9 76 aa7.07□□□□□ -1.28
VPS25-202ENST00000589219 LYRM7Q5U5X0 104 aa7.07□□□□□ -1.28
VPS25-202ENST00000589219 CEMP1Q6PRD7 247 aaPredicted RBP7.07□□□□□ -1.28
VPS25-202ENST00000589219 FAM19A3Q7Z5A8 133 aa7.07□□□□□ -1.28
VPS25-202ENST00000589219 SBSPONQ8IVN8 264 aa7.07□□□□□ -1.28
VPS25-202ENST00000589219 LINC00612Q8N6U2 182 aa7.07□□□□□ -1.28
VPS25-202ENST00000589219 TMEM243Q9BU79 118 aa7.07□□□□□ -1.28
VPS25-202ENST00000589219 UBE2L6O14933 153 aa7.06□□□□□ -1.28
VPS25-202ENST00000589219 IGHV3-30P01768 117 aa7.06□□□□□ -1.28
VPS25-202ENST00000589219 LINC00694P0DN24 101 aa7.06□□□□□ -1.28
VPS25-202ENST00000589219 IGHV3-30-3P0DP02 117 aa7.06□□□□□ -1.28
VPS25-202ENST00000589219 IGHV3-30-5P0DP03 117 aa7.06□□□□□ -1.28
VPS25-202ENST00000589219 HERVK_113P63121 156 aa7.06□□□□□ -1.28
VPS25-202ENST00000589219 EGFEM1PQ0D2K5 195 aa7.06□□□□□ -1.28
VPS25-202ENST00000589219 K7EIL1 84 aa7.05□□□□□ -1.28
VPS25-202ENST00000589219 APOC4P55056 127 aa7.05□□□□□ -1.28
VPS25-202ENST00000589219 RNASE13Q5GAN3 156 aaKnown RBP7.05□□□□□ -1.28
VPS25-202ENST00000589219 TMEM101Q96IK0 257 aa7.05□□□□□ -1.28
VPS25-202ENST00000589219 VSIG2Q96IQ7 327 aa7.05□□□□□ -1.28
VPS25-202ENST00000589219 NAA38Q9BRA0 125 aaKnown RBP7.05□□□□□ -1.28
VPS25-202ENST00000589219 COL7A1Q02388 2944 aa7.04□□□□□ -1.28
VPS25-202ENST00000589219 A0A0J9YXY3 114 aa7.04□□□□□ -1.28
VPS25-202ENST00000589219 KRTAP10-11P60412 298 aa7.04□□□□□ -1.28
VPS25-202ENST00000589219 RPL24P83731 157 aaKnown RBP7.04□□□□□ -1.28
VPS25-202ENST00000589219 ZFAND6Q6FIF0 208 aa7.04□□□□□ -1.28
VPS25-202ENST00000589219 NTM-AS1Q6ZSK4 140 aa7.04□□□□□ -1.28
VPS25-202ENST00000589219 C10orf126Q8N4M7 172 aa7.04□□□□□ -1.28
VPS25-202ENST00000589219 NDUFA12Q9UI09 145 aa7.04□□□□□ -1.28
VPS25-202ENST00000589219 SORL1Q92673 2214 aa7.04□□□□□ -1.28
VPS25-202ENST00000589219 IGHV3-64A0A075B6Q5 118 aa7.03□□□□□ -1.28
VPS25-202ENST00000589219 TRAV16A0A0A6YYK6 109 aaPredicted RBP7.03□□□□□ -1.28
VPS25-202ENST00000589219 A0A0B4J2C4 111 aa7.03□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 59.9 ms