RNA–Protein interactions for RNA: ENST00000588059.5

VPS4B-202, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 5

Gene VPS4B, Length 1,252 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-202ENST00000588059 AMMECR1LQ6DCA0 310 aa6.91□□□□□ -1.3
VPS4B-202ENST00000588059 MRAP2Q96G30 205 aa6.91□□□□□ -1.3
VPS4B-202ENST00000588059 ST20Q9HBF5 79 aa6.91□□□□□ -1.3
VPS4B-202ENST00000588059 AP5S1Q9NUS5 200 aa6.91□□□□□ -1.3
VPS4B-202ENST00000588059 IGKV2D-29A0A075B6S2 120 aaPredicted RBP6.9□□□□□ -1.3
VPS4B-202ENST00000588059 IGKV3OR2-268A0A0C4DH90 116 aa6.9□□□□□ -1.3
VPS4B-202ENST00000588059 TRBV6-5A0A0K0K1A5 114 aa6.9□□□□□ -1.3
VPS4B-202ENST00000588059 SMIM27A0A1W2PRY6 76 aa6.9□□□□□ -1.3
VPS4B-202ENST00000588059 IGKV2-29A2NJV5 120 aaPredicted RBP6.9□□□□□ -1.3
VPS4B-202ENST00000588059 SMKR1H3BMG3 65 aa6.9□□□□□ -1.3
VPS4B-202ENST00000588059 I3L3M4 83 aa6.9□□□□□ -1.3
VPS4B-202ENST00000588059 NCR2O95944 276 aa6.9□□□□□ -1.3
VPS4B-202ENST00000588059 CAMPP49913 170 aa6.9□□□□□ -1.3
VPS4B-202ENST00000588059 RNASEKQ6P5S7 137 aaKnown RBP6.9□□□□□ -1.3
VPS4B-202ENST00000588059 KRTAP9-2Q9BYQ4 174 aa6.9□□□□□ -1.3
VPS4B-202ENST00000588059 RPS10P46783 165 aaKnown RBP6.89□□□□□ -1.31
VPS4B-202ENST00000588059 REG3GQ6UW15 175 aa6.89□□□□□ -1.31
VPS4B-202ENST00000588059 TMEM242Q9NWH2 141 aa6.89□□□□□ -1.31
VPS4B-202ENST00000588059 TRAV8-4A0A0B4J246 113 aa6.88□□□□□ -1.31
VPS4B-202ENST00000588059 COX6A2Q02221 97 aa6.88□□□□□ -1.31
VPS4B-202ENST00000588059 MAJINQ3KP22 176 aa6.88□□□□□ -1.31
VPS4B-202ENST00000588059 MRPL54Q6P161 138 aaKnown RBP6.88□□□□□ -1.31
VPS4B-202ENST00000588059 SPINK6Q6UWN8 80 aa6.88□□□□□ -1.31
VPS4B-202ENST00000588059 IGKV2-24A0A0C4DH68 120 aa6.87□□□□□ -1.31
VPS4B-202ENST00000588059 A0A1B0GW15 77 aa6.87□□□□□ -1.31
VPS4B-202ENST00000588059 H7C423 109 aa6.87□□□□□ -1.31
VPS4B-202ENST00000588059 PPP1R17O96001 155 aa6.87□□□□□ -1.31
VPS4B-202ENST00000588059 TSHBP01222 138 aa6.87□□□□□ -1.31
VPS4B-202ENST00000588059 FGF6P10767 208 aa6.87□□□□□ -1.31
VPS4B-202ENST00000588059 FCER1GP30273 86 aa6.87□□□□□ -1.31
VPS4B-202ENST00000588059 FAM104BQ5XKR9 115 aa6.87□□□□□ -1.31
VPS4B-202ENST00000588059 C15orf56Q8N910 161 aa6.87□□□□□ -1.31
VPS4B-202ENST00000588059 TMEM101Q96IK0 257 aa6.87□□□□□ -1.31
VPS4B-202ENST00000588059 BTF3L4Q96K17 158 aa6.87□□□□□ -1.31
VPS4B-202ENST00000588059 VCYO14598 125 aa6.86□□□□□ -1.31
VPS4B-202ENST00000588059 PPP1R2P9O14990 202 aa6.86□□□□□ -1.31
VPS4B-202ENST00000588059 S100A8P05109 93 aa6.86□□□□□ -1.31
VPS4B-202ENST00000588059 CKS2P33552 79 aa6.86□□□□□ -1.31
VPS4B-202ENST00000588059 POLR2KP53803 58 aaKnown RBP6.86□□□□□ -1.31
VPS4B-202ENST00000588059 HBBP68871 147 aa6.86□□□□□ -1.31
VPS4B-202ENST00000588059 SRSF9Q13242 221 aaKnown RBP eCLIP6.86□□□□□ -1.31
VPS4B-202ENST00000588059 MRPL51Q4U2R6 128 aaKnown RBP6.86□□□□□ -1.31
VPS4B-202ENST00000588059 STPG4Q8N801 248 aa6.86□□□□□ -1.31
VPS4B-202ENST00000588059 PRSS3P2Q8NHM4 247 aa6.86□□□□□ -1.31
VPS4B-202ENST00000588059 TRBV27A0A0K0K1C4 114 aa6.85□□□□□ -1.31
VPS4B-202ENST00000588059 GAGE12HA6NDE8 117 aa6.85□□□□□ -1.31
VPS4B-202ENST00000588059 F8W036 122 aa6.85□□□□□ -1.31
VPS4B-202ENST00000588059 ZNF25P17030 456 aaPredicted RBP6.85□□□□□ -1.31
VPS4B-202ENST00000588059 SUMO2P61956 95 aaKnown RBP6.85□□□□□ -1.31
VPS4B-202ENST00000588059 PNRC1Q12796 327 aaPredicted RBP6.85□□□□□ -1.31
VPS4B-202ENST00000588059 CLLU1Q5K131 121 aa6.85□□□□□ -1.31
VPS4B-202ENST00000588059 NRACQ8N912 160 aa6.85□□□□□ -1.31
VPS4B-202ENST00000588059 OR5A1Q8NGJ0 315 aa6.85□□□□□ -1.31
VPS4B-202ENST00000588059 C7orf77A4D0Y5 90 aa6.84□□□□□ -1.31
VPS4B-202ENST00000588059 LINC00862A6NCI5 91 aa6.84□□□□□ -1.31
VPS4B-202ENST00000588059 MT-ND4LP03901 98 aa6.84□□□□□ -1.31
VPS4B-202ENST00000588059 ESDP10768 282 aa6.84□□□□□ -1.31
VPS4B-202ENST00000588059 KIR2DL4Q99706 377 aa6.84□□□□□ -1.31
VPS4B-202ENST00000588059 MUC2Q02817 5179 aa6.83□□□□□ -1.32
VPS4B-202ENST00000588059 A0A096LNI7 61 aa6.83□□□□□ -1.32
VPS4B-202ENST00000588059 A0A1B0GXF2 115 aa6.83□□□□□ -1.32
VPS4B-202ENST00000588059 D6R8Y8 96 aa6.83□□□□□ -1.32
VPS4B-202ENST00000588059 IFITM2Q01629 132 aa6.83□□□□□ -1.32
VPS4B-202ENST00000588059 CHCHD10Q8WYQ3 142 aaPredicted RBP6.83□□□□□ -1.32
VPS4B-202ENST00000588059 ANAPC16Q96DE5 110 aa6.83□□□□□ -1.32
VPS4B-202ENST00000588059 TNFRSF6BO95407 300 aa6.82□□□□□ -1.32
VPS4B-202ENST00000588059 HIGD2BQ4VC39 106 aa6.82□□□□□ -1.32
VPS4B-202ENST00000588059 CFAP161Q6P656 301 aa6.82□□□□□ -1.32
VPS4B-202ENST00000588059 ATP5L2Q7Z4Y8 100 aa6.82□□□□□ -1.32
VPS4B-202ENST00000588059 C20orf78Q9BR46 151 aa6.82□□□□□ -1.32
VPS4B-202ENST00000588059 FAT4Q6V0I7 4981 aa6.81□□□□□ -1.32
VPS4B-202ENST00000588059 TRBV24-1A0A075B6N3 115 aa6.81□□□□□ -1.32
VPS4B-202ENST00000588059 NPYP01303 97 aa6.81□□□□□ -1.32
VPS4B-202ENST00000588059 XCL1P47992 114 aa6.81□□□□□ -1.32
VPS4B-202ENST00000588059 SMAGPQ0VAQ4 97 aa6.81□□□□□ -1.32
VPS4B-202ENST00000588059 Q6ZRP5 223 aa6.81□□□□□ -1.32
VPS4B-202ENST00000588059 MRPL52Q86TS9 123 aaKnown RBP6.81□□□□□ -1.32
VPS4B-202ENST00000588059 ZNF664Q8N3J9 261 aa6.81□□□□□ -1.32
VPS4B-202ENST00000588059 GVQW2A0A096LPI5 108 aaPredicted RBP6.8□□□□□ -1.32
VPS4B-202ENST00000588059 LINC00959A0A1B0GUT2 108 aa6.8□□□□□ -1.32
VPS4B-202ENST00000588059 CCL25O15444 150 aa6.8□□□□□ -1.32
VPS4B-202ENST00000588059 PPBPP02775 128 aa6.8□□□□□ -1.32
VPS4B-202ENST00000588059 SS18Q15532 418 aa6.8□□□□□ -1.32
VPS4B-202ENST00000588059 UQCC3Q6UW78 93 aa6.8□□□□□ -1.32
VPS4B-202ENST00000588059 TMEM136Q6ZRR5 245 aa6.8□□□□□ -1.32
VPS4B-202ENST00000588059 ORMDL3Q8N138 153 aa6.8□□□□□ -1.32
VPS4B-202ENST00000588059 TMEM18Q96B42 140 aa6.8□□□□□ -1.32
VPS4B-202ENST00000588059 SMIM2Q9BVW6 85 aa6.8□□□□□ -1.32
VPS4B-202ENST00000588059 CDC42SE2Q9NRR3 84 aa6.8□□□□□ -1.32
VPS4B-202ENST00000588059 KRTAP9-6A0A140TA67 174 aa6.79□□□□□ -1.32
VPS4B-202ENST00000588059 TMEM218A2RU14 115 aa6.79□□□□□ -1.32
VPS4B-202ENST00000588059 TCAPO15273 167 aa6.79□□□□□ -1.32
VPS4B-202ENST00000588059 RPL32P62910 135 aaKnown RBP6.79□□□□□ -1.32
VPS4B-202ENST00000588059 FOXI1Q12951 378 aa6.79□□□□□ -1.32
VPS4B-202ENST00000588059 RNASE13Q5GAN3 156 aaKnown RBP6.79□□□□□ -1.32
VPS4B-202ENST00000588059 PRELID3AQ96N28 172 aa6.79□□□□□ -1.32
VPS4B-202ENST00000588059 LINC00474Q9P2X8 69 aa6.79□□□□□ -1.32
VPS4B-202ENST00000588059 UBE2D4Q9Y2X8 147 aa6.79□□□□□ -1.32
VPS4B-202ENST00000588059 ADCYAP1P18509 176 aa6.78□□□□□ -1.32
VPS4B-202ENST00000588059 COMMD7Q86VX2 200 aa6.78□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 51.8 ms