RNA–Protein interactions for RNA: ENST00000584760.1

SREBF1-223, Transcript of sterol regulatory element binding transcription factor 1, human

TSL 2

Gene SREBF1, Length 564 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SREBF1-223	ENST00000584760	S100A8	P05109	93 aa		8.59	□□□□□ -1.03
SREBF1-223	ENST00000584760	CNBP	P62633	177 aa	Known RBP	8.59	□□□□□ -1.03
SREBF1-223	ENST00000584760	C15orf56	Q8N910	161 aa		8.59	□□□□□ -1.03
SREBF1-223	ENST00000584760	C9orf163	Q8N9P6	203 aa		8.59	□□□□□ -1.03
SREBF1-223	ENST00000584760	OR5A1	Q8NGJ0	315 aa		8.59	□□□□□ -1.03
SREBF1-223	ENST00000584760	CHCHD10	Q8WYQ3	142 aa	Predicted RBP	8.59	□□□□□ -1.03
SREBF1-223	ENST00000584760	BTF3L4	Q96K17	158 aa		8.59	□□□□□ -1.03
SREBF1-223	ENST00000584760	UBR4	Q5T4S7	5183 aa		8.58	□□□□□ -1.04
SREBF1-223	ENST00000584760	TRBV24-1	A0A075B6N3	115 aa		8.58	□□□□□ -1.04
SREBF1-223	ENST00000584760	hDV102S1	A0JD36	115 aa		8.58	□□□□□ -1.04
SREBF1-223	ENST00000584760	IFITM2	Q01629	132 aa		8.58	□□□□□ -1.04
SREBF1-223	ENST00000584760	ATP5L2	Q7Z4Y8	100 aa		8.58	□□□□□ -1.04
SREBF1-223	ENST00000584760	TMEM101	Q96IK0	257 aa		8.58	□□□□□ -1.04
SREBF1-223	ENST00000584760		F8W036	122 aa		8.57	□□□□□ -1.04
SREBF1-223	ENST00000584760	FCER1G	P30273	86 aa		8.57	□□□□□ -1.04
SREBF1-223	ENST00000584760	CKS2	P33552	79 aa		8.57	□□□□□ -1.04
SREBF1-223	ENST00000584760	RPL32	P62910	135 aa	Known RBP	8.57	□□□□□ -1.04
SREBF1-223	ENST00000584760	LINC00528	Q8N1L1	170 aa		8.57	□□□□□ -1.04
SREBF1-223	ENST00000584760	CIRBP-AS1	Q8TBR5	109 aa		8.57	□□□□□ -1.04
SREBF1-223	ENST00000584760	KIR2DL4	Q99706	377 aa		8.57	□□□□□ -1.04
SREBF1-223	ENST00000584760	C20orf78	Q9BR46	151 aa		8.57	□□□□□ -1.04
SREBF1-223	ENST00000584760	CDC42SE2	Q9NRR3	84 aa		8.57	□□□□□ -1.04
SREBF1-223	ENST00000584760	LINC00959	A0A1B0GUT2	108 aa		8.56	□□□□□ -1.04
SREBF1-223	ENST00000584760		D6R8Y8	96 aa		8.56	□□□□□ -1.04
SREBF1-223	ENST00000584760	TNFRSF6B	O95407	300 aa		8.56	□□□□□ -1.04
SREBF1-223	ENST00000584760	SLPI	P03973	132 aa		8.56	□□□□□ -1.04
SREBF1-223	ENST00000584760	FOXI1	Q12951	378 aa		8.56	□□□□□ -1.04
SREBF1-223	ENST00000584760	PHOX2A	O14813	284 aa		8.55	□□□□□ -1.04
SREBF1-223	ENST00000584760	NPY	P01303	97 aa		8.55	□□□□□ -1.04
SREBF1-223	ENST00000584760	ZNF664	Q8N3J9	261 aa		8.55	□□□□□ -1.04
SREBF1-223	ENST00000584760	ANAPC16	Q96DE5	110 aa		8.55	□□□□□ -1.04
SREBF1-223	ENST00000584760	SMIM2	Q9BVW6	85 aa		8.55	□□□□□ -1.04
SREBF1-223	ENST00000584760	UBE2D4	Q9Y2X8	147 aa		8.55	□□□□□ -1.04
SREBF1-223	ENST00000584760	CSDC2	Q9Y534	153 aa	Known RBP	8.55	□□□□□ -1.04
SREBF1-223	ENST00000584760	AFDN-AS1	Q9Y6Z5	254 aa	Predicted RBP	8.55	□□□□□ -1.04
SREBF1-223	ENST00000584760	GVQW2	A0A096LPI5	108 aa	Predicted RBP	8.54	□□□□□ -1.04
SREBF1-223	ENST00000584760	CCL25	O15444	150 aa		8.54	□□□□□ -1.04
SREBF1-223	ENST00000584760	PPBP	P02775	128 aa		8.54	□□□□□ -1.04
SREBF1-223	ENST00000584760	MT-ND4L	P03901	98 aa		8.54	□□□□□ -1.04
SREBF1-223	ENST00000584760	ADCYAP1	P18509	176 aa		8.54	□□□□□ -1.04
SREBF1-223	ENST00000584760	XCL1	P47992	114 aa		8.54	□□□□□ -1.04
SREBF1-223	ENST00000584760	CFAP161	Q6P656	301 aa		8.54	□□□□□ -1.04
SREBF1-223	ENST00000584760	SDIM1	Q6ZPB5	146 aa		8.54	□□□□□ -1.04
SREBF1-223	ENST00000584760	AP5S1	Q9NUS5	200 aa		8.54	□□□□□ -1.04
SREBF1-223	ENST00000584760	PLA2G2D	Q9UNK4	145 aa		8.54	□□□□□ -1.04
SREBF1-223	ENST00000584760	PANO1	I0J062	215 aa		8.53	□□□□□ -1.04
SREBF1-223	ENST00000584760	HIGD2B	Q4VC39	106 aa		8.53	□□□□□ -1.04
SREBF1-223	ENST00000584760	UQCC3	Q6UW78	93 aa		8.53	□□□□□ -1.04
SREBF1-223	ENST00000584760	ORMDL3	Q8N138	153 aa		8.53	□□□□□ -1.04
SREBF1-223	ENST00000584760	TRAV16	A0A0A6YYK6	109 aa	Predicted RBP	8.52	□□□□□ -1.05
SREBF1-223	ENST00000584760	TCAP	O15273	167 aa		8.52	□□□□□ -1.05
SREBF1-223	ENST00000584760	SMAGP	Q0VAQ4	97 aa		8.52	□□□□□ -1.05
SREBF1-223	ENST00000584760	CIRBP	Q14011	172 aa	Known RBP	8.52	□□□□□ -1.05
SREBF1-223	ENST00000584760	SS18	Q15532	418 aa		8.52	□□□□□ -1.05
SREBF1-223	ENST00000584760		Q6ZUT4	128 aa		8.52	□□□□□ -1.05
SREBF1-223	ENST00000584760	TIMM21	Q9BVV7	248 aa		8.52	□□□□□ -1.05
SREBF1-223	ENST00000584760	HMCN2	Q8NDA2	5059 aa		8.51	□□□□□ -1.05
SREBF1-223	ENST00000584760	IGHV3-64	A0A075B6Q5	118 aa		8.51	□□□□□ -1.05
SREBF1-223	ENST00000584760	KRTAP10-4	P60372	401 aa	Predicted RBP	8.51	□□□□□ -1.05
SREBF1-223	ENST00000584760	RNASE13	Q5GAN3	156 aa	Known RBP	8.51	□□□□□ -1.05
SREBF1-223	ENST00000584760	CD164L2	Q6UWJ8	174 aa		8.51	□□□□□ -1.05
SREBF1-223	ENST00000584760	PRELID3A	Q96N28	172 aa		8.51	□□□□□ -1.05
SREBF1-223	ENST00000584760	TMEM218	A2RU14	115 aa		8.5	□□□□□ -1.05
SREBF1-223	ENST00000584760	RPL39	P62891	51 aa	Known RBP	8.5	□□□□□ -1.05
SREBF1-223	ENST00000584760	TMEM136	Q6ZRR5	245 aa		8.5	□□□□□ -1.05
SREBF1-223	ENST00000584760	TMEM18	Q96B42	140 aa		8.5	□□□□□ -1.05
SREBF1-223	ENST00000584760	IGHV1-58	A0A0C4DH39	117 aa		8.49	□□□□□ -1.05
SREBF1-223	ENST00000584760	CHTF8	P0CG12	524 aa		8.49	□□□□□ -1.05
SREBF1-223	ENST00000584760	FAM104A	Q969W3	186 aa		8.49	□□□□□ -1.05
SREBF1-223	ENST00000584760	SPANXA1	Q9NS26	97 aa		8.49	□□□□□ -1.05
SREBF1-223	ENST00000584760	LAMTOR2	Q9Y2Q5	125 aa		8.49	□□□□□ -1.05
SREBF1-223	ENST00000584760	PRSS47	A8MTI9	375 aa		8.48	□□□□□ -1.05
SREBF1-223	ENST00000584760	C1orf196	B1AJZ1	125 aa		8.48	□□□□□ -1.05
SREBF1-223	ENST00000584760	OXT	P01178	125 aa		8.48	□□□□□ -1.05
SREBF1-223	ENST00000584760	SPACA4	Q8TDM5	124 aa		8.48	□□□□□ -1.05
SREBF1-223	ENST00000584760	IMMP2L	Q96T52	175 aa		8.48	□□□□□ -1.05
SREBF1-223	ENST00000584760	PKHD1L1	Q86WI1	4243 aa		8.47	□□□□□ -1.05
SREBF1-223	ENST00000584760	TRAV13-1	A0A0B4J241	112 aa		8.47	□□□□□ -1.05
SREBF1-223	ENST00000584760	LINC00526	Q96FQ7	95 aa		8.47	□□□□□ -1.05
SREBF1-223	ENST00000584760	MRPS36	P82909	103 aa	Known RBP	8.46	□□□□□ -1.06
SREBF1-223	ENST00000584760	COX6A2	Q02221	97 aa		8.46	□□□□□ -1.06
SREBF1-223	ENST00000584760	COMMD7	Q86VX2	200 aa		8.46	□□□□□ -1.06
SREBF1-223	ENST00000584760	SEC11C	Q9BY50	192 aa		8.46	□□□□□ -1.06
SREBF1-223	ENST00000584760	CTDSP1	Q9GZU7	261 aa		8.46	□□□□□ -1.06
SREBF1-223	ENST00000584760	MAP1LC3A	Q9H492	121 aa		8.46	□□□□□ -1.06
SREBF1-223	ENST00000584760	LRP1	Q07954	4544 aa	Known RBP	8.45	□□□□□ -1.06
SREBF1-223	ENST00000584760	COX7A2L	O14548	114 aa		8.45	□□□□□ -1.06
SREBF1-223	ENST00000584760	RAB5A	P20339	215 aa		8.45	□□□□□ -1.06
SREBF1-223	ENST00000584760	PRSS3P2	Q8NHM4	247 aa		8.45	□□□□□ -1.06
SREBF1-223	ENST00000584760	OPRPN	Q99935	248 aa	Predicted RBP	8.45	□□□□□ -1.06
SREBF1-223	ENST00000584760	TRAV9-1	A0A075B6T8	112 aa		8.44	□□□□□ -1.06
SREBF1-223	ENST00000584760		A0A087WYN8	130 aa		8.44	□□□□□ -1.06
SREBF1-223	ENST00000584760	LOC389332	A0A1B0GUA5	103 aa		8.44	□□□□□ -1.06
SREBF1-223	ENST00000584760	CARD19	Q96LW7	228 aa		8.44	□□□□□ -1.06
SREBF1-223	ENST00000584760	ZNF561-AS1	K7EIQ3	104 aa		8.43	□□□□□ -1.06
SREBF1-223	ENST00000584760	IFI27	P40305	119 aa	Predicted RBP	8.43	□□□□□ -1.06
SREBF1-223	ENST00000584760	RPL37A	P61513	92 aa	Known RBP	8.43	□□□□□ -1.06
SREBF1-223	ENST00000584760	C10orf91	Q5T1B1	145 aa		8.43	□□□□□ -1.06
SREBF1-223	ENST00000584760		Q8N8P6	123 aa		8.43	□□□□□ -1.06
SREBF1-223	ENST00000584760	PLAC8	Q9NZF1	115 aa		8.43	□□□□□ -1.06

Retrieved 100 of 20,778 RNA–protein pairs in 1049 ms