RNA–Protein interactions for RNA: ENST00000583780.1

SHMT1-210, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 332 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-210ENST00000583780 MT-ND4LP03901 98 aa13.72□□□□□ -0.21
SHMT1-210ENST00000583780 ADCYAP1P18509 176 aa13.72□□□□□ -0.21
SHMT1-210ENST00000583780 REG3AQ06141 175 aa13.72□□□□□ -0.21
SHMT1-210ENST00000583780 A0A1B0GW15 77 aa13.71□□□□□ -0.21
SHMT1-210ENST00000583780 TMEM218A2RU14 115 aa13.71□□□□□ -0.21
SHMT1-210ENST00000583780 UBE2L6O14933 153 aa13.71□□□□□ -0.21
SHMT1-210ENST00000583780 RPS10P46783 165 aaKnown RBP13.71□□□□□ -0.21
SHMT1-210ENST00000583780 HBBP68871 147 aa13.71□□□□□ -0.21
SHMT1-210ENST00000583780 C20orf203Q8NBC4 194 aa13.71□□□□□ -0.21
SHMT1-210ENST00000583780 ANAPC16Q96DE5 110 aa13.71□□□□□ -0.21
SHMT1-210ENST00000583780 ST20Q9HBF5 79 aa13.71□□□□□ -0.21
SHMT1-210ENST00000583780 TRBV6-5A0A0K0K1A5 114 aa13.7□□□□□ -0.22
SHMT1-210ENST00000583780 PMCHP20382 165 aa13.7□□□□□ -0.22
SHMT1-210ENST00000583780 FAM104BQ5XKR9 115 aa13.7□□□□□ -0.22
SHMT1-210ENST00000583780 APCSP02743 223 aa13.69□□□□□ -0.22
SHMT1-210ENST00000583780 S100A8P05109 93 aa13.69□□□□□ -0.22
SHMT1-210ENST00000583780 KRTAP10-8P60410 259 aa13.69□□□□□ -0.22
SHMT1-210ENST00000583780 A0A1B0GXF2 115 aa13.68□□□□□ -0.22
SHMT1-210ENST00000583780 I3L3M4 83 aa13.68□□□□□ -0.22
SHMT1-210ENST00000583780 MRPL51Q4U2R6 128 aaKnown RBP13.68□□□□□ -0.22
SHMT1-210ENST00000583780 TRAV8-4A0A0B4J246 113 aa13.67□□□□□ -0.22
SHMT1-210ENST00000583780 AP5S1Q9NUS5 200 aa13.67□□□□□ -0.22
SHMT1-210ENST00000583780 TMEM242Q9NWH2 141 aa13.67□□□□□ -0.22
SHMT1-210ENST00000583780 IGLV4-60A0A075B6I1 120 aa13.66□□□□□ -0.22
SHMT1-210ENST00000583780 TRAV16A0A0A6YYK6 109 aaPredicted RBP13.66□□□□□ -0.22
SHMT1-210ENST00000583780 IGKV2D-29A0A075B6S2 120 aaPredicted RBP13.65□□□□□ -0.22
SHMT1-210ENST00000583780 A0A0J9YXV3 536 aa13.65□□□□□ -0.22
SHMT1-210ENST00000583780 A0A1B0GUV1 79 aa13.65□□□□□ -0.22
SHMT1-210ENST00000583780 IGKV2-29A2NJV5 120 aaPredicted RBP13.65□□□□□ -0.22
SHMT1-210ENST00000583780 CKS2P33552 79 aa13.65□□□□□ -0.22
SHMT1-210ENST00000583780 ATP5L2Q7Z4Y8 100 aa13.65□□□□□ -0.22
SHMT1-210ENST00000583780 LINC00862A6NCI5 91 aa13.64□□□□□ -0.23
SHMT1-210ENST00000583780 PPP1R17O96001 155 aa13.64□□□□□ -0.23
SHMT1-210ENST00000583780 COX6A2Q02221 97 aa13.64□□□□□ -0.23
SHMT1-210ENST00000583780 NRACQ8N912 160 aa13.64□□□□□ -0.23
SHMT1-210ENST00000583780 C7orf33Q8WU49 177 aa13.64□□□□□ -0.23
SHMT1-210ENST00000583780 SEC11CQ9BY50 192 aa13.64□□□□□ -0.23
SHMT1-210ENST00000583780 TSHBP01222 138 aa13.63□□□□□ -0.23
SHMT1-210ENST00000583780 POLR2KP53803 58 aaKnown RBP13.63□□□□□ -0.23
SHMT1-210ENST00000583780 PRR3P79522 188 aaKnown RBP13.63□□□□□ -0.23
SHMT1-210ENST00000583780 AMMECR1LQ6DCA0 310 aa13.63□□□□□ -0.23
SHMT1-210ENST00000583780 D6R8Y8 96 aa13.62□□□□□ -0.23
SHMT1-210ENST00000583780 SUMO2P61956 95 aaKnown RBP13.62□□□□□ -0.23
SHMT1-210ENST00000583780 RNASEKQ6P5S7 137 aaKnown RBP13.62□□□□□ -0.23
SHMT1-210ENST00000583780 C15orf56Q8N910 161 aa13.62□□□□□ -0.23
SHMT1-210ENST00000583780 PRSS3P2Q8NHM4 247 aa13.62□□□□□ -0.23
SHMT1-210ENST00000583780 TRBV27A0A0K0K1C4 114 aa13.61□□□□□ -0.23
SHMT1-210ENST00000583780 VCYO14598 125 aa13.6□□□□□ -0.23
SHMT1-210ENST00000583780 FCER1GP30273 86 aa13.6□□□□□ -0.23
SHMT1-210ENST00000583780 BTF3L4Q96K17 158 aa13.6□□□□□ -0.23
SHMT1-210ENST00000583780 TNFRSF6BO95407 300 aa13.59□□□□□ -0.23
SHMT1-210ENST00000583780 FGF6P10767 208 aa13.59□□□□□ -0.23
SHMT1-210ENST00000583780 MAJINQ3KP22 176 aa13.59□□□□□ -0.23
SHMT1-210ENST00000583780 CTDSP1Q9GZU7 261 aa13.59□□□□□ -0.23
SHMT1-210ENST00000583780 IGKV3OR2-268A0A0C4DH90 116 aa13.58□□□□□ -0.24
SHMT1-210ENST00000583780 H7C423 109 aa13.58□□□□□ -0.24
SHMT1-210ENST00000583780 SRSF9Q13242 221 aaKnown RBP eCLIP13.58□□□□□ -0.24
SHMT1-210ENST00000583780 KIR2DL4Q99706 377 aa13.58□□□□□ -0.24
SHMT1-210ENST00000583780 C7orf77A4D0Y5 90 aa13.57□□□□□ -0.24
SHMT1-210ENST00000583780 NPYP01303 97 aa13.57□□□□□ -0.24
SHMT1-210ENST00000583780 ESDP10768 282 aa13.57□□□□□ -0.24
SHMT1-210ENST00000583780 C20orf78Q9BR46 151 aa13.57□□□□□ -0.24
SHMT1-210ENST00000583780 LPAP08519 4548 aa13.56□□□□□ -0.24
SHMT1-210ENST00000583780 TRBV24-1A0A075B6N3 115 aa13.56□□□□□ -0.24
SHMT1-210ENST00000583780 IGKV2-24A0A0C4DH68 120 aa13.56□□□□□ -0.24
SHMT1-210ENST00000583780 PPBPP02775 128 aa13.56□□□□□ -0.24
SHMT1-210ENST00000583780 SPINK6Q6UWN8 80 aa13.56□□□□□ -0.24
SHMT1-210ENST00000583780 ORMDL3Q8N138 153 aa13.56□□□□□ -0.24
SHMT1-210ENST00000583780 STPG4Q8N801 248 aa13.56□□□□□ -0.24
SHMT1-210ENST00000583780 IMMP2LQ96T52 175 aa13.56□□□□□ -0.24
SHMT1-210ENST00000583780 TMEM136Q6ZRR5 245 aa13.55□□□□□ -0.24
SHMT1-210ENST00000583780 TMEM101Q96IK0 257 aa13.55□□□□□ -0.24
SHMT1-210ENST00000583780 PRELID3AQ96N28 172 aa13.55□□□□□ -0.24
SHMT1-210ENST00000583780 GAGE12HA6NDE8 117 aa13.54□□□□□ -0.24
SHMT1-210ENST00000583780 ZNF25P17030 456 aaPredicted RBP13.54□□□□□ -0.24
SHMT1-210ENST00000583780 C10orf91Q5T1B1 145 aa13.54□□□□□ -0.24
SHMT1-210ENST00000583780 SMIM2Q9BVW6 85 aa13.54□□□□□ -0.24
SHMT1-210ENST00000583780 CARHSP1Q9Y2V2 147 aaKnown RBP13.54□□□□□ -0.24
SHMT1-210ENST00000583780 HIGD2BQ4VC39 106 aa13.53□□□□□ -0.24
SHMT1-210ENST00000583780 CFAP161Q6P656 301 aa13.53□□□□□ -0.24
SHMT1-210ENST00000583780 OR5A1Q8NGJ0 315 aa13.53□□□□□ -0.24
SHMT1-210ENST00000583780 A0A096LNI7 61 aa13.52□□□□□ -0.25
SHMT1-210ENST00000583780 S100PP25815 95 aa13.52□□□□□ -0.25
SHMT1-210ENST00000583780 RPL32P62910 135 aaKnown RBP13.52□□□□□ -0.25
SHMT1-210ENST00000583780 REG3GQ6UW15 175 aa13.52□□□□□ -0.25
SHMT1-210ENST00000583780 RPS10P5Q9NQ39 176 aa13.52□□□□□ -0.25
SHMT1-210ENST00000583780 RHEBQ15382 184 aa13.5□□□□□ -0.25
SHMT1-210ENST00000583780 TRAV9-1A0A075B6T8 112 aa13.49□□□□□ -0.25
SHMT1-210ENST00000583780 TCAPO15273 167 aa13.49□□□□□ -0.25
SHMT1-210ENST00000583780 APOC3P02656 99 aa13.49□□□□□ -0.25
SHMT1-210ENST00000583780 MRPL52Q86TS9 123 aaKnown RBP13.49□□□□□ -0.25
SHMT1-210ENST00000583780 LOC389332A0A1B0GUA5 103 aa13.48□□□□□ -0.25
SHMT1-210ENST00000583780 TMEM18Q96B42 140 aa13.48□□□□□ -0.25
SHMT1-210ENST00000583780 GVQW2A0A096LPI5 108 aaPredicted RBP13.47□□□□□ -0.25
SHMT1-210ENST00000583780 SMAGPQ0VAQ4 97 aa13.47□□□□□ -0.25
SHMT1-210ENST00000583780 NDUFA5Q16718 116 aa13.47□□□□□ -0.25
SHMT1-210ENST00000583780 MAP1LC3AQ9H492 121 aa13.47□□□□□ -0.25
SHMT1-210ENST00000583780 LAMTOR2Q9Y2Q5 125 aa13.47□□□□□ -0.25
SHMT1-210ENST00000583780 UBE2D4Q9Y2X8 147 aa13.47□□□□□ -0.25
SHMT1-210ENST00000583780 ZNF664Q8N3J9 261 aa13.46□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 56.6 ms