RNA–Protein interactions for RNA: ENST00000583595.1

SS18-223, Transcript of SS18, nBAF chromatin remodeling complex subunit, human

TSL 3

Gene SS18, Length 375 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SS18-223	ENST00000583595	ERH	P84090	104 aa	Known RBP	3.1	□□□□□ -1.91
SS18-223	ENST00000583595		Q5W150	140 aa		3.1	□□□□□ -1.91
SS18-223	ENST00000583595	PRR15	Q8IV56	129 aa		3.1	□□□□□ -1.91
SS18-223	ENST00000583595	FAM216B	Q8N7L0	139 aa		3.1	□□□□□ -1.91
SS18-223	ENST00000583595	TOMM6	Q96B49	74 aa		3.1	□□□□□ -1.91
SS18-223	ENST00000583595	SCGB3A1	Q96QR1	104 aa		3.1	□□□□□ -1.91
SS18-223	ENST00000583595	TIMM21	Q9BVV7	248 aa		3.1	□□□□□ -1.91
SS18-223	ENST00000583595	WDFY4	Q6ZS81	3184 aa		3.1	□□□□□ -1.91
SS18-223	ENST00000583595	C5orf42	Q9H799	3197 aa		3.1	□□□□□ -1.91
SS18-223	ENST00000583595	TNRC6B	Q9UPQ9	1833 aa	Known RBP	3.09	□□□□□ -1.91
SS18-223	ENST00000583595	SPTBN4	Q9H254	2564 aa		3.09	□□□□□ -1.91
SS18-223	ENST00000583595	GPR179	Q6PRD1	2367 aa		3.09	□□□□□ -1.91
SS18-223	ENST00000583595	EP300	Q09472	2414 aa	Predicted RBP	3.09	□□□□□ -1.91
SS18-223	ENST00000583595	IGHV1-45	A0A0A0MS14	117 aa		3.09	□□□□□ -1.91
SS18-223	ENST00000583595		A0A0J9YX75	114 aa		3.09	□□□□□ -1.91
SS18-223	ENST00000583595	C11orf86	A6NJI1	115 aa		3.09	□□□□□ -1.91
SS18-223	ENST00000583595	IQCF6	A8MYZ5	107 aa		3.09	□□□□□ -1.91
SS18-223	ENST00000583595	SH2D1A	O60880	128 aa		3.09	□□□□□ -1.91
SS18-223	ENST00000583595	LGALS3	P17931	250 aa	Known RBP	3.09	□□□□□ -1.91
SS18-223	ENST00000583595	RHOH	Q15669	191 aa		3.09	□□□□□ -1.91
SS18-223	ENST00000583595	C16orf47	Q6ZP98	133 aa	Predicted RBP	3.09	□□□□□ -1.91
SS18-223	ENST00000583595	KRTAP5-2	Q701N4	177 aa		3.09	□□□□□ -1.91
SS18-223	ENST00000583595	FP248	Q71RG6	208 aa	Predicted RBP	3.09	□□□□□ -1.91
SS18-223	ENST00000583595	RNF5	Q99942	180 aa		3.09	□□□□□ -1.91
SS18-223	ENST00000583595	CNFN	Q9BYD5	112 aa		3.09	□□□□□ -1.91
SS18-223	ENST00000583595	LINC00574	Q9H8X3	128 aa		3.09	□□□□□ -1.91
SS18-223	ENST00000583595	PROK2	Q9HC23	129 aa		3.09	□□□□□ -1.91
SS18-223	ENST00000583595	TRIO	O75962	3097 aa		3.09	□□□□□ -1.91
SS18-223	ENST00000583595	MYOF	Q9NZM1	2061 aa		3.08	□□□□□ -1.92
SS18-223	ENST00000583595	IGKV1D-37	A0A075B6S9	117 aa		3.08	□□□□□ -1.92
SS18-223	ENST00000583595	SDHAF1	A6NFY7	115 aa		3.08	□□□□□ -1.92
SS18-223	ENST00000583595		H7C2G1	150 aa		3.08	□□□□□ -1.92
SS18-223	ENST00000583595	LEPROT	O15243	131 aa		3.08	□□□□□ -1.92
SS18-223	ENST00000583595	NDUFC1	O43677	76 aa		3.08	□□□□□ -1.92
SS18-223	ENST00000583595	CRIP1	P50238	77 aa		3.08	□□□□□ -1.92
SS18-223	ENST00000583595		Q6ZS52	159 aa		3.08	□□□□□ -1.92
SS18-223	ENST00000583595	MUSTN1	Q8IVN3	82 aa		3.08	□□□□□ -1.92
SS18-223	ENST00000583595	KLF14	Q8TD94	323 aa	Predicted RBP	3.08	□□□□□ -1.92
SS18-223	ENST00000583595	SLC50A1	Q9BRV3	221 aa		3.08	□□□□□ -1.92
SS18-223	ENST00000583595	EML6	Q6ZMW3	1958 aa		3.08	□□□□□ -1.92
SS18-223	ENST00000583595	USP34	Q70CQ2	3546 aa		3.08	□□□□□ -1.92
SS18-223	ENST00000583595	SNRNP200	O75643	2136 aa	Known RBP	3.08	□□□□□ -1.92
SS18-223	ENST00000583595	CABIN1	Q9Y6J0	2220 aa		3.08	□□□□□ -1.92
SS18-223	ENST00000583595	CFAP54	Q96N23	3096 aa		3.08	□□□□□ -1.92
SS18-223	ENST00000583595	CEP192	Q8TEP8	1941 aa		3.07	□□□□□ -1.92
SS18-223	ENST00000583595	MYO7B	Q6PIF6	2116 aa		3.07	□□□□□ -1.92
SS18-223	ENST00000583595	ALPK2	Q86TB3	2170 aa		3.07	□□□□□ -1.92
SS18-223	ENST00000583595	OTOGL	Q3ZCN5	2332 aa		3.07	□□□□□ -1.92
SS18-223	ENST00000583595	CEP250	Q9BV73	2442 aa		3.07	□□□□□ -1.92
SS18-223	ENST00000583595	TRBV7-6	A0A0J9YX20	115 aa		3.07	□□□□□ -1.92
SS18-223	ENST00000583595	FAM223B	A6NKX1	122 aa		3.07	□□□□□ -1.92
SS18-223	ENST00000583595		M0R3E3	92 aa		3.07	□□□□□ -1.92
SS18-223	ENST00000583595	XCL1	P47992	114 aa		3.07	□□□□□ -1.92
SS18-223	ENST00000583595	LINC00313	P59037	77 aa		3.07	□□□□□ -1.92
SS18-223	ENST00000583595	DEFB110	Q30KQ9	67 aa		3.07	□□□□□ -1.92
SS18-223	ENST00000583595	LINC00483	Q53H64	154 aa		3.07	□□□□□ -1.92
SS18-223	ENST00000583595	S100A7L2	Q5SY68	101 aa		3.07	□□□□□ -1.92
SS18-223	ENST00000583595	ATP5EP2	Q5VTU8	51 aa		3.07	□□□□□ -1.92
SS18-223	ENST00000583595	DYNAP	Q8N1N2	210 aa		3.07	□□□□□ -1.92
SS18-223	ENST00000583595	SMIM2	Q9BVW6	85 aa		3.07	□□□□□ -1.92
SS18-223	ENST00000583595	PRR34	Q9NV39	138 aa		3.07	□□□□□ -1.92
SS18-223	ENST00000583595	CCL26	Q9Y258	94 aa		3.07	□□□□□ -1.92
SS18-223	ENST00000583595	EPG5	Q9HCE0	2579 aa		3.07	□□□□□ -1.92
SS18-223	ENST00000583595	ZNF292	O60281	2723 aa		3.07	□□□□□ -1.92
SS18-223	ENST00000583595	MYO15A	Q9UKN7	3530 aa		3.07	□□□□□ -1.92
SS18-223	ENST00000583595	TRBV19	A0A075B6N1	114 aa		3.06	□□□□□ -1.92
SS18-223	ENST00000583595	IGHV3-43	A0A0B4J1X8	118 aa		3.06	□□□□□ -1.92
SS18-223	ENST00000583595	CGB3	P0DN86	165 aa		3.06	□□□□□ -1.92
SS18-223	ENST00000583595	CGB7	P0DN87	165 aa		3.06	□□□□□ -1.92
SS18-223	ENST00000583595	DAZ4	Q86SG3	579 aa	Known RBP	3.06	□□□□□ -1.92
SS18-223	ENST00000583595	MIR7-3HG	Q8N6C7	128 aa		3.06	□□□□□ -1.92
SS18-223	ENST00000583595	TMEM141	Q96I45	108 aa		3.06	□□□□□ -1.92
SS18-223	ENST00000583595	AMELX	Q99217	191 aa		3.06	□□□□□ -1.92
SS18-223	ENST00000583595	HEATR1	Q9H583	2144 aa	Known RBP	3.06	□□□□□ -1.92
SS18-223	ENST00000583595	DAZ1	Q9NQZ3	744 aa	Known RBP	3.06	□□□□□ -1.92
SS18-223	ENST00000583595	NDUFA4L2	Q9NRX3	87 aa		3.06	□□□□□ -1.92
SS18-223	ENST00000583595	UBE2D4	Q9Y2X8	147 aa		3.06	□□□□□ -1.92
SS18-223	ENST00000583595	ACACB	O00763	2458 aa		3.05	□□□□□ -1.92
SS18-223	ENST00000583595	DMD	P11532	3685 aa		3.05	□□□□□ -1.92
SS18-223	ENST00000583595	TRAV7	A0A075B6U4	112 aa		3.05	□□□□□ -1.92
SS18-223	ENST00000583595	TRBV10-3	A0A0K0K1G6	114 aa		3.05	□□□□□ -1.92
SS18-223	ENST00000583595	DEFB108A	A8MXU0	73 aa		3.05	□□□□□ -1.92
SS18-223	ENST00000583595		H7BZZ5	65 aa		3.05	□□□□□ -1.92
SS18-223	ENST00000583595		I3L3M4	83 aa		3.05	□□□□□ -1.92
SS18-223	ENST00000583595		M0R381	172 aa		3.05	□□□□□ -1.92
SS18-223	ENST00000583595	COX7A2L	O14548	114 aa		3.05	□□□□□ -1.92
SS18-223	ENST00000583595	TIMM17B	O60830	172 aa		3.05	□□□□□ -1.92
SS18-223	ENST00000583595	PPP1R17	O96001	155 aa		3.05	□□□□□ -1.92
SS18-223	ENST00000583595	CCK	P06307	115 aa		3.05	□□□□□ -1.92
SS18-223	ENST00000583595	BAALC-AS2	P0C853	105 aa		3.05	□□□□□ -1.92
SS18-223	ENST00000583595	SNRPD3	P62318	126 aa	Known RBP	3.05	□□□□□ -1.92
SS18-223	ENST00000583595	KLKP1	Q107X0	134 aa		3.05	□□□□□ -1.92
SS18-223	ENST00000583595	PDE6H	Q13956	83 aa		3.05	□□□□□ -1.92
SS18-223	ENST00000583595	RPL39P5	Q59GN2	51 aa		3.05	□□□□□ -1.92
SS18-223	ENST00000583595	CHCHD2P9	Q5T1J5	151 aa	Predicted RBP	3.05	□□□□□ -1.92
SS18-223	ENST00000583595	ADM2	Q7Z4H4	148 aa		3.05	□□□□□ -1.92
SS18-223	ENST00000583595	FAM223A	Q8IWN6	122 aa		3.05	□□□□□ -1.92
SS18-223	ENST00000583595	CLEC2B	Q92478	149 aa		3.05	□□□□□ -1.92
SS18-223	ENST00000583595	SPTBN2	O15020	2390 aa		3.05	□□□□□ -1.92
SS18-223	ENST00000583595	TPR	P12270	2363 aa	Known RBP	3.04	□□□□□ -1.92

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