RNA–Protein interactions for RNA: ENST00000581226.1

SMCHD1-204, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 459 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-204ENST00000581226 NDUFA4L2Q9NRX3 87 aa-0.21□□□□□ -2.44
SMCHD1-204ENST00000581226 ARHGEF5Q12774 1597 aa-0.21□□□□□ -2.44
SMCHD1-204ENST00000581226 HSPG2P98160 4391 aa-0.21□□□□□ -2.44
SMCHD1-204ENST00000581226 PPRC1Q5VV67 1664 aaKnown RBP-0.21□□□□□ -2.44
SMCHD1-204ENST00000581226 DCHS2Q6V1P9 2916 aa-0.21□□□□□ -2.44
SMCHD1-204ENST00000581226 ATRQ13535 2644 aa-0.21□□□□□ -2.44
SMCHD1-204ENST00000581226 A2ML1A8K2U0 1454 aa-0.22□□□□□ -2.44
SMCHD1-204ENST00000581226 MIF4GDA9UHW6 222 aaKnown RBP-0.22□□□□□ -2.44
SMCHD1-204ENST00000581226 FGF7P21781 194 aa-0.22□□□□□ -2.44
SMCHD1-204ENST00000581226 SPANXDQ9BXN6 97 aa-0.22□□□□□ -2.44
SMCHD1-204ENST00000581226 LINC00474Q9P2X8 69 aa-0.22□□□□□ -2.44
SMCHD1-204ENST00000581226 ROCK2O75116 1388 aaKnown RBP-0.22□□□□□ -2.45
SMCHD1-204ENST00000581226 OOSP1A8MZH6 123 aa-0.23□□□□□ -2.45
SMCHD1-204ENST00000581226 TET3O43151 1660 aa-0.24□□□□□ -2.45
SMCHD1-204ENST00000581226 MYOM1P52179 1685 aa-0.24□□□□□ -2.45
SMCHD1-204ENST00000581226 TRBV7-3A0A075B6L6 115 aa-0.24□□□□□ -2.45
SMCHD1-204ENST00000581226 A0A0D9SFI3 127 aa-0.24□□□□□ -2.45
SMCHD1-204ENST00000581226 SMIM6P0DI80 62 aa-0.24□□□□□ -2.45
SMCHD1-204ENST00000581226 CATR1Q13166 79 aa-0.24□□□□□ -2.45
SMCHD1-204ENST00000581226 NPVFQ9HCQ7 196 aa-0.24□□□□□ -2.45
SMCHD1-204ENST00000581226 V9GYH0 126 aa-0.24□□□□□ -2.45
SMCHD1-204ENST00000581226 ANKRD17O75179 2603 aaKnown RBP-0.24□□□□□ -2.45
SMCHD1-204ENST00000581226 FLNAP21333 2647 aaKnown RBP-0.24□□□□□ -2.45
SMCHD1-204ENST00000581226 LPAP08519 4548 aa-0.25□□□□□ -2.45
SMCHD1-204ENST00000581226 CTXND1A0A1B0GTU2 59 aa-0.25□□□□□ -2.45
SMCHD1-204ENST00000581226 I3L2K1 104 aa-0.25□□□□□ -2.45
SMCHD1-204ENST00000581226 HAMPP81172 84 aa-0.25□□□□□ -2.45
SMCHD1-204ENST00000581226 C1orf54Q8WWF1 131 aa-0.25□□□□□ -2.45
SMCHD1-204ENST00000581226 MACF1Q9UPN3 7388 aaKnown RBP-0.26□□□□□ -2.45
SMCHD1-204ENST00000581226 A0A1B0GV90 55 aa-0.26□□□□□ -2.45
SMCHD1-204ENST00000581226 PP6455Q8WZ26 134 aa-0.26□□□□□ -2.45
SMCHD1-204ENST00000581226 PPP3R2Q96LZ3 170 aa-0.26□□□□□ -2.45
SMCHD1-204ENST00000581226 GOLGA4Q13439 2230 aaKnown RBP-0.27□□□□□ -2.45
SMCHD1-204ENST00000581226 WFDC2Q14508 124 aa-0.27□□□□□ -2.45
SMCHD1-204ENST00000581226 C5orf38Q86SI9 138 aa-0.27□□□□□ -2.45
SMCHD1-204ENST00000581226 SMIM4Q8WVI0 70 aa-0.27□□□□□ -2.45
SMCHD1-204ENST00000581226 PAPPAQ13219 1627 aa-0.27□□□□□ -2.45
SMCHD1-204ENST00000581226 ERCC6L2Q5T890 1561 aa-0.28□□□□□ -2.45
SMCHD1-204ENST00000581226 CSPG4Q6UVK1 2322 aa-0.28□□□□□ -2.45
SMCHD1-204ENST00000581226 PIGBOS1A0A0B4J2F0 54 aa-0.28□□□□□ -2.45
SMCHD1-204ENST00000581226 IGLC7A0M8Q6 106 aa-0.28□□□□□ -2.45
SMCHD1-204ENST00000581226 M0R3E3 92 aa-0.28□□□□□ -2.45
SMCHD1-204ENST00000581226 HMGN4O00479 90 aa-0.28□□□□□ -2.45
SMCHD1-204ENST00000581226 APOC2P02655 101 aa-0.28□□□□□ -2.45
SMCHD1-204ENST00000581226 AKAIN1P0CW23 69 aa-0.28□□□□□ -2.45
SMCHD1-204ENST00000581226 IFITM1P13164 125 aa-0.28□□□□□ -2.45
SMCHD1-204ENST00000581226 COMMD6Q7Z4G1 85 aa-0.28□□□□□ -2.45
SMCHD1-204ENST00000581226 MGST2Q99735 147 aa-0.28□□□□□ -2.45
SMCHD1-204ENST00000581226 LINC01558Q9Y6Z2 57 aa-0.28□□□□□ -2.45
SMCHD1-204ENST00000581226 NAIPQ13075 1403 aa-0.29□□□□□ -2.46
SMCHD1-204ENST00000581226 LRP2P98164 4655 aa-0.29□□□□□ -2.46
SMCHD1-204ENST00000581226 TRAV22A0A0B4J277 110 aa-0.29□□□□□ -2.46
SMCHD1-204ENST00000581226 F8VRH5 84 aa-0.29□□□□□ -2.46
SMCHD1-204ENST00000581226 RPL13AP3Q6NVV1 102 aa-0.29□□□□□ -2.46
SMCHD1-204ENST00000581226 Q8IZM0 81 aa-0.29□□□□□ -2.46
SMCHD1-204ENST00000581226 DYNLRB1Q9NP97 96 aa-0.29□□□□□ -2.46
SMCHD1-204ENST00000581226 TENM2Q9NT68 2774 aa-0.3□□□□□ -2.46
SMCHD1-204ENST00000581226 SPTA1P02549 2419 aa-0.3□□□□□ -2.46
SMCHD1-204ENST00000581226 CFDP00746 253 aaPredicted RBP-0.3□□□□□ -2.46
SMCHD1-204ENST00000581226 Q5VSD8 79 aa-0.3□□□□□ -2.46
SMCHD1-204ENST00000581226 BAGE2Q86Y30 109 aa-0.3□□□□□ -2.46
SMCHD1-204ENST00000581226 C8orf59Q8N0T1 100 aaPredicted RBP-0.3□□□□□ -2.46
SMCHD1-204ENST00000581226 TP53AIP1Q9HCN2 124 aa-0.3□□□□□ -2.46
SMCHD1-204ENST00000581226 ALMS1Q8TCU4 4167 aa-0.3□□□□□ -2.46
SMCHD1-204ENST00000581226 MAP1BP46821 2468 aaKnown RBP-0.3□□□□□ -2.46
SMCHD1-204ENST00000581226 BSNQ9UPA5 3926 aa-0.31□□□□□ -2.46
SMCHD1-204ENST00000581226 UQCR11O14957 56 aa-0.31□□□□□ -2.46
SMCHD1-204ENST00000581226 DLEU1O43261 78 aa-0.31□□□□□ -2.46
SMCHD1-204ENST00000581226 TNFP01375 233 aa-0.31□□□□□ -2.46
SMCHD1-204ENST00000581226 TMEM170BQ5T4T1 132 aa-0.31□□□□□ -2.46
SMCHD1-204ENST00000581226 Q6JHZ5 121 aa-0.31□□□□□ -2.46
SMCHD1-204ENST00000581226 MYOM2P54296 1465 aa-0.31□□□□□ -2.46
SMCHD1-204ENST00000581226 ZANQ9Y493 2812 aa-0.31□□□□□ -2.46
SMCHD1-204ENST00000581226 KDM5AP29375 1690 aaKnown RBP-0.31□□□□□ -2.46
SMCHD1-204ENST00000581226 C10orf71Q711Q0 1435 aa-0.31□□□□□ -2.46
SMCHD1-204ENST00000581226 NSD3Q9BZ95 1437 aa-0.31□□□□□ -2.46
SMCHD1-204ENST00000581226 RAPGEF6Q8TEU7 1601 aa-0.31□□□□□ -2.46
SMCHD1-204ENST00000581226 TSC2P49815 1807 aa-0.31□□□□□ -2.46
SMCHD1-204ENST00000581226 SCN7AQ01118 1682 aa-0.32□□□□□ -2.46
SMCHD1-204ENST00000581226 EFCAB10A6NFE3 127 aa-0.32□□□□□ -2.46
SMCHD1-204ENST00000581226 SSSCA1O60232 199 aa-0.32□□□□□ -2.46
SMCHD1-204ENST00000581226 PRM1P04553 51 aa-0.32□□□□□ -2.46
SMCHD1-204ENST00000581226 SPCS1Q9Y6A9 102 aa-0.32□□□□□ -2.46
SMCHD1-204ENST00000581226 HMGXB3Q12766 1538 aa-0.33□□□□□ -2.46
SMCHD1-204ENST00000581226 C10orf142B7Z368 130 aa-0.33□□□□□ -2.46
SMCHD1-204ENST00000581226 SPRR1AP35321 89 aa-0.33□□□□□ -2.46
SMCHD1-204ENST00000581226 COX17Q14061 63 aa-0.33□□□□□ -2.46
SMCHD1-204ENST00000581226 DEFB109BQ30KR1 87 aa-0.33□□□□□ -2.46
SMCHD1-204ENST00000581226 MRPL54Q6P161 138 aaKnown RBP-0.33□□□□□ -2.46
SMCHD1-204ENST00000581226 DPH3P1Q9H4G8 78 aa-0.33□□□□□ -2.46
SMCHD1-204ENST00000581226 CDC42SE2Q9NRR3 84 aa-0.33□□□□□ -2.46
SMCHD1-204ENST00000581226 PRKDCP78527 4128 aaKnown RBP-0.33□□□□□ -2.46
SMCHD1-204ENST00000581226 SMG6Q86US8 1419 aaKnown RBP-0.33□□□□□ -2.46
SMCHD1-204ENST00000581226 STAB1Q9NY15 2570 aa-0.34□□□□□ -2.46
SMCHD1-204ENST00000581226 SETXQ7Z333 2677 aaKnown RBP-0.34□□□□□ -2.46
SMCHD1-204ENST00000581226 C9orf153Q5TBE3 101 aa-0.34□□□□□ -2.46
SMCHD1-204ENST00000581226 HECTD4Q9Y4D8 3996 aa-0.34□□□□□ -2.46
SMCHD1-204ENST00000581226 KTN1Q86UP2 1357 aaKnown RBP-0.34□□□□□ -2.46
SMCHD1-204ENST00000581226 WNK1Q9H4A3 2382 aa-0.35□□□□□ -2.47
SMCHD1-204ENST00000581226 IFNGP01579 166 aa-0.35□□□□□ -2.47
Retrieved 100 of 20,778 RNA–protein pairs in 86.3 ms