RNA–Protein interactions for RNA: ENST00000580958.5

SS18-217, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 775 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-217ENST00000580958 UBE2D4Q9Y2X8 147 aa7.36□□□□□ -1.23
SS18-217ENST00000580958 LINC00587B1AMM8 73 aa7.35□□□□□ -1.23
SS18-217ENST00000580958 IGLC3P0DOY3 106 aa7.35□□□□□ -1.23
SS18-217ENST00000580958 STPG4Q8N801 248 aa7.35□□□□□ -1.23
SS18-217ENST00000580958 FAM104AQ969W3 186 aa7.35□□□□□ -1.23
SS18-217ENST00000580958 TM2D3Q9BRN9 247 aa7.35□□□□□ -1.23
SS18-217ENST00000580958 TMEM243Q9BU79 118 aa7.35□□□□□ -1.23
SS18-217ENST00000580958 GTSF1LQ9H1H1 148 aa7.35□□□□□ -1.23
SS18-217ENST00000580958 CST9LQ9H4G1 147 aa7.35□□□□□ -1.23
SS18-217ENST00000580958 TRBV25-1A0A075B6N4 114 aa7.34□□□□□ -1.23
SS18-217ENST00000580958 TRAV26-1A0A087WT03 109 aa7.34□□□□□ -1.23
SS18-217ENST00000580958 PLNP26678 52 aa7.34□□□□□ -1.23
SS18-217ENST00000580958 DDTP30046 118 aa7.34□□□□□ -1.23
SS18-217ENST00000580958 TCTAP57738 103 aa7.34□□□□□ -1.23
SS18-217ENST00000580958 RNASE13Q5GAN3 156 aaKnown RBP7.34□□□□□ -1.23
SS18-217ENST00000580958 Q6ZUT4 128 aa7.34□□□□□ -1.23
SS18-217ENST00000580958 ATP6V0E2Q8NHE4 81 aa7.34□□□□□ -1.23
SS18-217ENST00000580958 C14orf144Q96I85 54 aa7.34□□□□□ -1.23
SS18-217ENST00000580958 TIMM21Q9BVV7 248 aa7.34□□□□□ -1.23
SS18-217ENST00000580958 VCX2Q9H322 139 aa7.34□□□□□ -1.23
SS18-217ENST00000580958 IGLV4-69A0A075B6H9 119 aa7.33□□□□□ -1.24
SS18-217ENST00000580958 A0A096LPF7 62 aa7.33□□□□□ -1.24
SS18-217ENST00000580958 UBE2L6O14933 153 aa7.33□□□□□ -1.24
SS18-217ENST00000580958 NPSP0C0P6 89 aa7.33□□□□□ -1.24
SS18-217ENST00000580958 FGF6P10767 208 aa7.33□□□□□ -1.24
SS18-217ENST00000580958 GAGE6Q13070 117 aa7.33□□□□□ -1.24
SS18-217ENST00000580958 TMEM97Q5BJF2 176 aa7.33□□□□□ -1.24
SS18-217ENST00000580958 PAPPA-AS1Q5QFB9 102 aa7.33□□□□□ -1.24
SS18-217ENST00000580958 LCE3BQ5TA77 95 aa7.33□□□□□ -1.24
SS18-217ENST00000580958 AMELXQ99217 191 aa7.33□□□□□ -1.24
SS18-217ENST00000580958 MIEN1Q9BRT3 115 aa7.33□□□□□ -1.24
SS18-217ENST00000580958 UQCR10Q9UDW1 63 aa7.33□□□□□ -1.24
SS18-217ENST00000580958 TRBV6-8A0A0A6YYG3 113 aa7.32□□□□□ -1.24
SS18-217ENST00000580958 C11orf86A6NJI1 115 aa7.32□□□□□ -1.24
SS18-217ENST00000580958 NANOS2P60321 138 aaKnown RBP7.32□□□□□ -1.24
SS18-217ENST00000580958 SMAGPQ0VAQ4 97 aa7.32□□□□□ -1.24
SS18-217ENST00000580958 DGAT2L7PQ6IED9 249 aa7.32□□□□□ -1.24
SS18-217ENST00000580958 Q6ZTC4 211 aa7.32□□□□□ -1.24
SS18-217ENST00000580958 DNHD1Q96M86 4753 aa7.32□□□□□ -1.24
SS18-217ENST00000580958 A0A0J9YXV3 536 aa7.31□□□□□ -1.24
SS18-217ENST00000580958 H7C423 109 aa7.31□□□□□ -1.24
SS18-217ENST00000580958 MRPS36P82909 103 aaKnown RBP7.31□□□□□ -1.24
SS18-217ENST00000580958 AMMECR1LQ6DCA0 310 aa7.31□□□□□ -1.24
SS18-217ENST00000580958 MRPL52Q86TS9 123 aaKnown RBP7.31□□□□□ -1.24
SS18-217ENST00000580958 C11orf45Q8TAV5 145 aa7.31□□□□□ -1.24
SS18-217ENST00000580958 CHCHD5Q9BSY4 110 aa7.31□□□□□ -1.24
SS18-217ENST00000580958 TP73-AS1Q9UF72 201 aa7.31□□□□□ -1.24
SS18-217ENST00000580958 ICOSQ9Y6W8 199 aa7.31□□□□□ -1.24
SS18-217ENST00000580958 COX8AP10176 69 aa7.3□□□□□ -1.24
SS18-217ENST00000580958 MRPL23Q16540 153 aaKnown RBP7.3□□□□□ -1.24
SS18-217ENST00000580958 NFE4Q86UQ8 179 aa7.3□□□□□ -1.24
SS18-217ENST00000580958 OR5A1Q8NGJ0 315 aa7.3□□□□□ -1.24
SS18-217ENST00000580958 TMEM101Q96IK0 257 aa7.3□□□□□ -1.24
SS18-217ENST00000580958 CHAC1Q9BUX1 264 aa7.3□□□□□ -1.24
SS18-217ENST00000580958 DYNC2H1Q8NCM8 4307 aaKnown RBP7.3□□□□□ -1.24
SS18-217ENST00000580958 IGKV2D-26A0A0A0MRZ7 120 aa7.29□□□□□ -1.24
SS18-217ENST00000580958 NMUP48645 174 aa7.29□□□□□ -1.24
SS18-217ENST00000580958 HNRNPA3P51991 378 aaKnown RBP7.29□□□□□ -1.24
SS18-217ENST00000580958 SLC25A34Q6PIV7 304 aa7.29□□□□□ -1.24
SS18-217ENST00000580958 C2orf88Q9BSF0 95 aa7.29□□□□□ -1.24
SS18-217ENST00000580958 CSDC2Q9Y534 153 aaKnown RBP7.29□□□□□ -1.24
SS18-217ENST00000580958 TMEM170BQ5T4T1 132 aa7.28□□□□□ -1.24
SS18-217ENST00000580958 PCP2Q8IVA1 136 aa7.28□□□□□ -1.24
SS18-217ENST00000580958 CDC42SE2Q9NRR3 84 aa7.28□□□□□ -1.24
SS18-217ENST00000580958 DEFB131BA0A096LNP1 70 aa7.27□□□□□ -1.25
SS18-217ENST00000580958 ZNF22P17026 224 aaPredicted RBP7.27□□□□□ -1.25
SS18-217ENST00000580958 ZNF25P17030 456 aaPredicted RBP7.27□□□□□ -1.25
SS18-217ENST00000580958 UBE2D1P51668 147 aa7.27□□□□□ -1.25
SS18-217ENST00000580958 DEFA6Q01524 100 aa7.27□□□□□ -1.25
SS18-217ENST00000580958 SH2D6Q7Z4S9 175 aa7.27□□□□□ -1.25
SS18-217ENST00000580958 IGLV4-60A0A075B6I1 120 aa7.26□□□□□ -1.25
SS18-217ENST00000580958 TINCRA0A1B0GVN0 87 aa7.26□□□□□ -1.25
SS18-217ENST00000580958 TMEM262E9PQX1 116 aa7.26□□□□□ -1.25
SS18-217ENST00000580958 HERVK_113P61574 105 aa7.26□□□□□ -1.25
SS18-217ENST00000580958 CTAG1AP78358 180 aa7.26□□□□□ -1.25
SS18-217ENST00000580958 KRTAP21-3Q3LHN1 58 aa7.26□□□□□ -1.25
SS18-217ENST00000580958 BOD1L2Q8IYS8 172 aa7.26□□□□□ -1.25
SS18-217ENST00000580958 B9D2Q9BPU9 175 aa7.26□□□□□ -1.25
SS18-217ENST00000580958 TTTY13Q9BZ97 58 aa7.26□□□□□ -1.25
SS18-217ENST00000580958 TRAV13-1A0A0B4J241 112 aa7.25□□□□□ -1.25
SS18-217ENST00000580958 TMEM223A0PJW6 202 aa7.25□□□□□ -1.25
SS18-217ENST00000580958 E9PLD3 99 aa7.25□□□□□ -1.25
SS18-217ENST00000580958 H3BNG1 76 aa7.25□□□□□ -1.25
SS18-217ENST00000580958 LELP1Q5T871 98 aa7.25□□□□□ -1.25
SS18-217ENST00000580958 PRKDCP78527 4128 aaKnown RBP7.25□□□□□ -1.25
SS18-217ENST00000580958 DNAH7Q8WXX0 4024 aa7.25□□□□□ -1.25
SS18-217ENST00000580958 TRAV10A0A0B4J240 114 aa7.24□□□□□ -1.25
SS18-217ENST00000580958 TRAV8-6A0A0B4J262 113 aa7.24□□□□□ -1.25
SS18-217ENST00000580958 IGKV3OR2-268A0A0C4DH90 116 aa7.24□□□□□ -1.25
SS18-217ENST00000580958 DLEU1O43261 78 aa7.24□□□□□ -1.25
SS18-217ENST00000580958 TIRAPP58753 221 aa7.24□□□□□ -1.25
SS18-217ENST00000580958 RBX1P62877 108 aa7.24□□□□□ -1.25
SS18-217ENST00000580958 COX6A2Q02221 97 aa7.24□□□□□ -1.25
SS18-217ENST00000580958 MPV17L2Q567V2 206 aa7.24□□□□□ -1.25
SS18-217ENST00000580958 LYPD5Q6UWN5 251 aa7.24□□□□□ -1.25
SS18-217ENST00000580958 C2orf91Q6ZV80 131 aa7.24□□□□□ -1.25
SS18-217ENST00000580958 FAM19A3Q7Z5A8 133 aa7.24□□□□□ -1.25
SS18-217ENST00000580958 LINC00469Q8N7U9 141 aa7.24□□□□□ -1.25
SS18-217ENST00000580958 MAPKAPK5-AS1Q8N8E1 139 aa7.24□□□□□ -1.25
SS18-217ENST00000580958 GEMIN7Q9H840 131 aaKnown RBP7.24□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 127.6 ms