RNA–Protein interactions for RNA: ENST00000580003.1

SS18-214, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 609 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-214ENST00000580003 R4GMQ9 66 aa-1.26□□□□□ -2.61
SS18-214ENST00000580003 SYNJ1O43426 1573 aa-1.26□□□□□ -2.61
SS18-214ENST00000580003 SMG1Q96Q15 3661 aaKnown RBP-1.26□□□□□ -2.61
SS18-214ENST00000580003 GCN1Q92616 2671 aaKnown RBP-1.26□□□□□ -2.61
SS18-214ENST00000580003 WNK3Q9BYP7 1800 aa-1.26□□□□□ -2.61
SS18-214ENST00000580003 K7EQZ3 153 aa-1.27□□□□□ -2.61
SS18-214ENST00000580003 RRAS2P62070 204 aaPredicted RBP-1.27□□□□□ -2.61
SS18-214ENST00000580003 CCL8P80075 99 aa-1.27□□□□□ -2.61
SS18-214ENST00000580003 MT1HP80294 61 aa-1.27□□□□□ -2.61
SS18-214ENST00000580003 KRTAP19-6Q3LI70 58 aa-1.27□□□□□ -2.61
SS18-214ENST00000580003 SCIMPQ6UWF3 145 aa-1.27□□□□□ -2.61
SS18-214ENST00000580003 SPTSSBQ8NFR3 76 aa-1.27□□□□□ -2.61
SS18-214ENST00000580003 GSKIPQ9P0R6 139 aa-1.27□□□□□ -2.61
SS18-214ENST00000580003 LINC00312Q9Y6C7 94 aa-1.27□□□□□ -2.61
SS18-214ENST00000580003 DNAH9Q9NYC9 4486 aa-1.28□□□□□ -2.61
SS18-214ENST00000580003 AKAP9Q99996 3911 aa-1.28□□□□□ -2.61
SS18-214ENST00000580003 KALRNO60229 2985 aa-1.28□□□□□ -2.61
SS18-214ENST00000580003 MGAM2Q2M2H8 2515 aa-1.28□□□□□ -2.61
SS18-214ENST00000580003 CSPG4Q6UVK1 2322 aa-1.28□□□□□ -2.61
SS18-214ENST00000580003 PXDNQ92626 1479 aa-1.28□□□□□ -2.61
SS18-214ENST00000580003 MT1AP04731 61 aa-1.28□□□□□ -2.61
SS18-214ENST00000580003 IGLC6P0CF74 106 aa-1.28□□□□□ -2.61
SS18-214ENST00000580003 HAMPP81172 84 aa-1.28□□□□□ -2.61
SS18-214ENST00000580003 PIGYQ3MUY2 71 aa-1.28□□□□□ -2.61
SS18-214ENST00000580003 SPTSSAQ969W0 71 aa-1.28□□□□□ -2.61
SS18-214ENST00000580003 KDM3BQ7LBC6 1761 aa-1.29□□□□□ -2.62
SS18-214ENST00000580003 ERCC6L2Q5T890 1561 aa-1.29□□□□□ -2.62
SS18-214ENST00000580003 RELNP78509 3460 aa-1.29□□□□□ -2.62
SS18-214ENST00000580003 FXYD6-FXYD2A0A087WZ82 144 aa-1.29□□□□□ -2.62
SS18-214ENST00000580003 SNCGO76070 127 aa-1.29□□□□□ -2.62
SS18-214ENST00000580003 NDUFB6O95139 128 aa-1.29□□□□□ -2.62
SS18-214ENST00000580003 CCL18P55774 89 aa-1.29□□□□□ -2.62
SS18-214ENST00000580003 Q6ZUT4 128 aa-1.29□□□□□ -2.62
SS18-214ENST00000580003 CSMD1Q96PZ7 3565 aa-1.29□□□□□ -2.62
SS18-214ENST00000580003 DNAH11Q96DT5 4516 aa-1.3□□□□□ -2.62
SS18-214ENST00000580003 LYSTQ99698 3801 aa-1.3□□□□□ -2.62
SS18-214ENST00000580003 FAM236AA0A1B0GUQ0 79 aa-1.3□□□□□ -2.62
SS18-214ENST00000580003 FAM236BA0A1B0GV22 79 aa-1.3□□□□□ -2.62
SS18-214ENST00000580003 TSPAN19P0C672 248 aa-1.3□□□□□ -2.62
SS18-214ENST00000580003 MT1HL1P0DM35 61 aa-1.3□□□□□ -2.62
SS18-214ENST00000580003 SCGB1A1P11684 91 aa-1.3□□□□□ -2.62
SS18-214ENST00000580003 DNAH5Q8TE73 4624 aa-1.3□□□□□ -2.62
SS18-214ENST00000580003 MYH13Q9UKX3 1938 aa-1.3□□□□□ -2.62
SS18-214ENST00000580003 UTP20O75691 2785 aaKnown RBP-1.31□□□□□ -2.62
SS18-214ENST00000580003 MT1XP80297 61 aa-1.31□□□□□ -2.62
SS18-214ENST00000580003 DEFA5Q01523 94 aa-1.31□□□□□ -2.62
SS18-214ENST00000580003 ADGRB1O14514 1584 aa-1.31□□□□□ -2.62
SS18-214ENST00000580003 LRP6O75581 1613 aa-1.32□□□□□ -2.62
SS18-214ENST00000580003 TRBV6-1A0A0K0K1D8 114 aa-1.32□□□□□ -2.62
SS18-214ENST00000580003 LOC730098B7Z3J9 87 aa-1.32□□□□□ -2.62
SS18-214ENST00000580003 M0R129 80 aa-1.32□□□□□ -2.62
SS18-214ENST00000580003 CEP295Q9C0D2 2601 aa-1.32□□□□□ -2.62
SS18-214ENST00000580003 COL14A1Q05707 1796 aaKnown RBP-1.32□□□□□ -2.62
SS18-214ENST00000580003 USF3Q68DE3 2245 aa-1.32□□□□□ -2.62
SS18-214ENST00000580003 PPP1R17O96001 155 aa-1.33□□□□□ -2.62
SS18-214ENST00000580003 ALX1Q15699 326 aa-1.33□□□□□ -2.62
SS18-214ENST00000580003 TAC4Q86UU9 113 aa-1.33□□□□□ -2.62
SS18-214ENST00000580003 DMXL1Q9Y485 3027 aa-1.33□□□□□ -2.62
SS18-214ENST00000580003 ZZEF1O43149 2961 aa-1.33□□□□□ -2.62
SS18-214ENST00000580003 LRRK2Q5S007 2527 aa-1.33□□□□□ -2.62
SS18-214ENST00000580003 DNAH17Q9UFH2 4485 aa-1.33□□□□□ -2.62
SS18-214ENST00000580003 DNAH7Q8WXX0 4024 aa-1.33□□□□□ -2.62
SS18-214ENST00000580003 TRIOO75962 3097 aa-1.34□□□□□ -2.62
SS18-214ENST00000580003 LRRC37A2A6NM11 1700 aa-1.34□□□□□ -2.62
SS18-214ENST00000580003 PIGBOS1A0A0B4J2F0 54 aa-1.34□□□□□ -2.62
SS18-214ENST00000580003 MT1BP07438 61 aa-1.34□□□□□ -2.62
SS18-214ENST00000580003 PLXNB2O15031 1838 aa-1.34□□□□□ -2.62
SS18-214ENST00000580003 SPTA1P02549 2419 aa-1.35□□□□□ -2.62
SS18-214ENST00000580003 RIF1Q5UIP0 2472 aaKnown RBP-1.35□□□□□ -2.63
SS18-214ENST00000580003 CCDC168Q8NDH2 2452 aa-1.35□□□□□ -2.63
SS18-214ENST00000580003 CTXND1A0A1B0GTU2 59 aa-1.35□□□□□ -2.63
SS18-214ENST00000580003 I3L2K1 104 aa-1.35□□□□□ -2.63
SS18-214ENST00000580003 M0R135 149 aa-1.35□□□□□ -2.63
SS18-214ENST00000580003 M0R2Z0 102 aa-1.35□□□□□ -2.63
SS18-214ENST00000580003 PITX3O75364 302 aa-1.35□□□□□ -2.63
SS18-214ENST00000580003 SIX6O95475 246 aa-1.35□□□□□ -2.63
SS18-214ENST00000580003 GUCA1AP43080 201 aaPredicted RBP-1.35□□□□□ -2.63
SS18-214ENST00000580003 COX17Q14061 63 aa-1.35□□□□□ -2.63
SS18-214ENST00000580003 SPAG11AQ6PDA7 123 aa-1.35□□□□□ -2.63
SS18-214ENST00000580003 SEC11CQ9BY50 192 aa-1.35□□□□□ -2.63
SS18-214ENST00000580003 CASKIN1Q8WXD9 1431 aa-1.35□□□□□ -2.63
SS18-214ENST00000580003 GVINP1Q7Z2Y8 2422 aa-1.36□□□□□ -2.63
SS18-214ENST00000580003 IFT140Q96RY7 1462 aa-1.36□□□□□ -2.63
SS18-214ENST00000580003 SMIM3Q9BZL3 60 aa-1.36□□□□□ -2.63
SS18-214ENST00000580003 FRYQ5TBA9 3013 aa-1.37□□□□□ -2.63
SS18-214ENST00000580003 CDK5RAP2Q96SN8 1893 aa-1.37□□□□□ -2.63
SS18-214ENST00000580003 SPENQ96T58 3664 aaKnown RBP-1.37□□□□□ -2.63
SS18-214ENST00000580003 DNAH10Q8IVF4 4471 aa-1.37□□□□□ -2.63
SS18-214ENST00000580003 C5orf42Q9H799 3197 aa-1.37□□□□□ -2.63
SS18-214ENST00000580003 LINC00694P0DN24 101 aa-1.37□□□□□ -2.63
SS18-214ENST00000580003 COX6B1P14854 86 aa-1.37□□□□□ -2.63
SS18-214ENST00000580003 S100A7L2Q5SY68 101 aa-1.37□□□□□ -2.63
SS18-214ENST00000580003 AQP10Q96PS8 301 aa-1.37□□□□□ -2.63
SS18-214ENST00000580003 CFAP46Q8IYW2 2715 aa-1.37□□□□□ -2.63
SS18-214ENST00000580003 ADGRG4Q8IZF6 3080 aa-1.37□□□□□ -2.63
SS18-214ENST00000580003 PKD1L2Q7Z442 2459 aa-1.38□□□□□ -2.63
SS18-214ENST00000580003 PRG4Q92954 1404 aaPredicted RBP-1.38□□□□□ -2.63
SS18-214ENST00000580003 URB1O60287 2271 aaKnown RBP-1.38□□□□□ -2.63
SS18-214ENST00000580003 NBASA2RRP1 2371 aa-1.38□□□□□ -2.63
SS18-214ENST00000580003 WDR7Q9Y4E6 1490 aa-1.38□□□□□ -2.63
Retrieved 100 of 20,778 RNA–protein pairs in 142.2 ms