RNA–Protein interactions for RNA: ENST00000568784.6

VPS35-210, Transcript of VPS35, retromer complex component, humanhuman

TSL 1 (best)

Gene VPS35, Length 4,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-210ENST00000568784 MIAQ16674 131 aa10.59□□□□□ -0.71
VPS35-210ENST00000568784 CFAP46Q8IYW2 2715 aa10.59□□□□□ -0.71
VPS35-210ENST00000568784 UBE2L6O14933 153 aa10.58□□□□□ -0.72
VPS35-210ENST00000568784 RS1O15537 224 aa10.58□□□□□ -0.72
VPS35-210ENST00000568784 C11orf68Q9H3H3 251 aaKnown RBP10.58□□□□□ -0.72
VPS35-210ENST00000568784 NDUFV3P56181 108 aaKnown RBP10.58□□□□□ -0.72
VPS35-210ENST00000568784 H7C423 109 aa10.58□□□□□ -0.72
VPS35-210ENST00000568784 STHQ8IWL8 128 aa10.57□□□□□ -0.72
VPS35-210ENST00000568784 CCDC179H3BU77 68 aa10.57□□□□□ -0.72
VPS35-210ENST00000568784 GAGE7O76087 117 aa10.57□□□□□ -0.72
VPS35-210ENST00000568784 GAGE12FP0CL80 117 aa10.57□□□□□ -0.72
VPS35-210ENST00000568784 GAGE12GP0CL81 117 aa10.57□□□□□ -0.72
VPS35-210ENST00000568784 GAGE12IP0CL82 117 aa10.57□□□□□ -0.72
VPS35-210ENST00000568784 LINC01356Q8N9X3 169 aa10.57□□□□□ -0.72
VPS35-210ENST00000568784 TRBV30A0A0K0K1B3 111 aa10.56□□□□□ -0.72
VPS35-210ENST00000568784 MRPS36P82909 103 aaKnown RBP10.56□□□□□ -0.72
VPS35-210ENST00000568784 INSP01308 110 aa10.56□□□□□ -0.72
VPS35-210ENST00000568784 SPANXA1Q9NS26 97 aa10.56□□□□□ -0.72
VPS35-210ENST00000568784 TRGV2A0A075B6R0 118 aa10.55□□□□□ -0.72
VPS35-210ENST00000568784 VPREB3Q9UKI3 123 aa10.55□□□□□ -0.72
VPS35-210ENST00000568784 UBE2D4Q9Y2X8 147 aa10.55□□□□□ -0.72
VPS35-210ENST00000568784 OR13C6PQ8NH95 151 aa10.55□□□□□ -0.72
VPS35-210ENST00000568784 TMEM101Q96IK0 257 aa10.55□□□□□ -0.72
VPS35-210ENST00000568784 TEX15Q9BXT5 2789 aa10.54□□□□□ -0.72
VPS35-210ENST00000568784 RPL36AP83881 106 aaKnown RBP10.54□□□□□ -0.72
VPS35-210ENST00000568784 RPL36ALQ969Q0 106 aaKnown RBP10.54□□□□□ -0.72
VPS35-210ENST00000568784 ODF3Q96PU9 254 aa10.54□□□□□ -0.72
VPS35-210ENST00000568784 PEMTQ9UBM1 199 aa10.54□□□□□ -0.72
VPS35-210ENST00000568784 COX6A2Q02221 97 aa10.54□□□□□ -0.72
VPS35-210ENST00000568784 TINCRA0A1B0GVN0 87 aa10.54□□□□□ -0.72
VPS35-210ENST00000568784 SBSPONQ8IVN8 264 aa10.54□□□□□ -0.72
VPS35-210ENST00000568784 RBMY1BA6NDE4 496 aaKnown RBP10.53□□□□□ -0.72
VPS35-210ENST00000568784 RBMY1EA6NEQ0 496 aaKnown RBP10.53□□□□□ -0.72
VPS35-210ENST00000568784 RBMY1DP0C7P1 496 aaKnown RBP10.53□□□□□ -0.72
VPS35-210ENST00000568784 PIK3CD-AS1Q5SR53 167 aa10.53□□□□□ -0.72
VPS35-210ENST00000568784 CHCHD5Q9BSY4 110 aa10.53□□□□□ -0.72
VPS35-210ENST00000568784 CHCHD7Q9BUK0 85 aa10.53□□□□□ -0.72
VPS35-210ENST00000568784 RPL35AP18077 110 aaKnown RBP10.53□□□□□ -0.72
VPS35-210ENST00000568784 LINC00158P58513 81 aa10.52□□□□□ -0.72
VPS35-210ENST00000568784 SMIM20Q8N5G0 67 aa10.52□□□□□ -0.72
VPS35-210ENST00000568784 Q9HAA7 133 aa10.52□□□□□ -0.72
VPS35-210ENST00000568784 GAGE2AQ6NT46 116 aa10.52□□□□□ -0.73
VPS35-210ENST00000568784 PYGO1Q9Y3Y4 419 aa10.52□□□□□ -0.73
VPS35-210ENST00000568784 FBN2P35556 2912 aa10.52□□□□□ -0.73
VPS35-210ENST00000568784 LINC00694P0DN24 101 aa10.51□□□□□ -0.73
VPS35-210ENST00000568784 PFN2P35080 140 aa10.51□□□□□ -0.73
VPS35-210ENST00000568784 MAP6D1Q9H9H5 199 aa10.51□□□□□ -0.73
VPS35-210ENST00000568784 NOP10Q9NPE3 64 aaKnown RBP10.51□□□□□ -0.73
VPS35-210ENST00000568784 DNAL4O96015 105 aa10.5□□□□□ -0.73
VPS35-210ENST00000568784 Q6ZTI0 123 aa10.5□□□□□ -0.73
VPS35-210ENST00000568784 LINC00308Q8TCZ7 52 aa10.5□□□□□ -0.73
VPS35-210ENST00000568784 H3BT86 120 aa10.5□□□□□ -0.73
VPS35-210ENST00000568784 LITAFQ99732 161 aa10.5□□□□□ -0.73
VPS35-210ENST00000568784 LST1O00453 97 aa10.49□□□□□ -0.73
VPS35-210ENST00000568784 VPS13CQ709C8 3753 aa10.49□□□□□ -0.73
VPS35-210ENST00000568784 PRB1P04280 392 aa10.49□□□□□ -0.73
VPS35-210ENST00000568784 RNASE1P07998 156 aaKnown RBP10.49□□□□□ -0.73
VPS35-210ENST00000568784 BAALC-AS2P0C853 105 aa10.49□□□□□ -0.73
VPS35-210ENST00000568784 HERVK_113P63121 156 aa10.49□□□□□ -0.73
VPS35-210ENST00000568784 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP10.49□□□□□ -0.73
VPS35-210ENST00000568784 FAM236AA0A1B0GUQ0 79 aa10.49□□□□□ -0.73
VPS35-210ENST00000568784 FAM236BA0A1B0GV22 79 aa10.49□□□□□ -0.73
VPS35-210ENST00000568784 NF1P21359 2839 aa10.49□□□□□ -0.73
VPS35-210ENST00000568784 SPANXDQ9BXN6 97 aa10.48□□□□□ -0.73
VPS35-210ENST00000568784 SPANXCQ9NY87 97 aa10.48□□□□□ -0.73
VPS35-210ENST00000568784 CITED1Q99966 193 aa10.48□□□□□ -0.73
VPS35-210ENST00000568784 TRGV4A0A0C4DH28 118 aa10.48□□□□□ -0.73
VPS35-210ENST00000568784 CRPP02741 224 aa10.48□□□□□ -0.73
VPS35-210ENST00000568784 ZNF702PQ9H963 129 aa10.48□□□□□ -0.73
VPS35-210ENST00000568784 IGSF10Q6WRI0 2623 aa10.47□□□□□ -0.73
VPS35-210ENST00000568784 BRI3O95415 125 aa10.47□□□□□ -0.73
VPS35-210ENST00000568784 Q8N2B8 174 aa10.47□□□□□ -0.73
VPS35-210ENST00000568784 MXRA5Q9NR99 2828 aa10.47□□□□□ -0.73
VPS35-210ENST00000568784 TMEM89A2RUT3 159 aa10.46□□□□□ -0.73
VPS35-210ENST00000568784 LINC00242Q5T6M2 205 aa10.46□□□□□ -0.73
VPS35-210ENST00000568784 PAX4O43316 350 aa10.46□□□□□ -0.73
VPS35-210ENST00000568784 DAZ2Q13117 558 aaKnown RBP10.46□□□□□ -0.73
VPS35-210ENST00000568784 DAZ4Q86SG3 579 aaKnown RBP10.46□□□□□ -0.73
VPS35-210ENST00000568784 DAZ3Q9NR90 486 aaKnown RBP10.46□□□□□ -0.73
VPS35-210ENST00000568784 C5orf38Q86SI9 138 aa10.46□□□□□ -0.74
VPS35-210ENST00000568784 NDUFA1O15239 70 aa10.45□□□□□ -0.74
VPS35-210ENST00000568784 NHLRC4P0CG21 123 aaPredicted RBP10.45□□□□□ -0.74
VPS35-210ENST00000568784 CLPSL2Q6UWE3 100 aa10.45□□□□□ -0.74
VPS35-210ENST00000568784 LOC100131303A0A0U1RQF7 123 aa10.45□□□□□ -0.74
VPS35-210ENST00000568784 WFDC10AQ9H1F0 79 aa10.44□□□□□ -0.74
VPS35-210ENST00000568784 FAM104AQ969W3 186 aa10.44□□□□□ -0.74
VPS35-210ENST00000568784 CSMD2Q7Z408 3487 aa10.44□□□□□ -0.74
VPS35-210ENST00000568784 ATP5G1P05496 136 aa10.44□□□□□ -0.74
VPS35-210ENST00000568784 DEFB130BP0DP73 79 aa10.44□□□□□ -0.74
VPS35-210ENST00000568784 DEFB130AP0DP74 79 aa10.44□□□□□ -0.74
VPS35-210ENST00000568784 MIR7-3HGQ8N6C7 128 aa10.44□□□□□ -0.74
VPS35-210ENST00000568784 COPS9Q8WXC6 57 aa10.44□□□□□ -0.74
VPS35-210ENST00000568784 TMEM243Q9BU79 118 aa10.43□□□□□ -0.74
VPS35-210ENST00000568784 A0A096LPF7 62 aa10.43□□□□□ -0.74
VPS35-210ENST00000568784 CITED2Q99967 270 aaPredicted RBP10.43□□□□□ -0.74
VPS35-210ENST00000568784 NBEAL2Q6ZNJ1 2754 aa10.43□□□□□ -0.74
VPS35-210ENST00000568784 COX7A2LO14548 114 aa10.43□□□□□ -0.74
VPS35-210ENST00000568784 DSCR9P59020 149 aa10.43□□□□□ -0.74
VPS35-210ENST00000568784 FLNAP21333 2647 aaKnown RBP10.43□□□□□ -0.74
VPS35-210ENST00000568784 K7EQD1 137 aa10.42□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms