RNA–Protein interactions for RNA: ENST00000567495.6

CLN3-227, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 769 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-227ENST00000567495 TRAV16A0A0A6YYK6 109 aaPredicted RBP12.11□□□□□ -0.47
CLN3-227ENST00000567495 IGKV3OR2-268A0A0C4DH90 116 aa12.11□□□□□ -0.47
CLN3-227ENST00000567495 SMKR1H3BMG3 65 aa12.11□□□□□ -0.47
CLN3-227ENST00000567495 TCAPO15273 167 aa12.11□□□□□ -0.47
CLN3-227ENST00000567495 CKS2P33552 79 aa12.11□□□□□ -0.47
CLN3-227ENST00000567495 MRPL51Q4U2R6 128 aaKnown RBP12.11□□□□□ -0.47
CLN3-227ENST00000567495 TRBV24-1A0A075B6N3 115 aa12.1□□□□□ -0.47
CLN3-227ENST00000567495 RPL32P62910 135 aaKnown RBP12.1□□□□□ -0.47
CLN3-227ENST00000567495 ATP5L2Q7Z4Y8 100 aa12.1□□□□□ -0.47
CLN3-227ENST00000567495 A0A1B0GXF2 115 aa12.09□□□□□ -0.47
CLN3-227ENST00000567495 PPBPP02775 128 aa12.09□□□□□ -0.47
CLN3-227ENST00000567495 LINC00528Q8N1L1 170 aa12.09□□□□□ -0.47
CLN3-227ENST00000567495 CIRBP-AS1Q8TBR5 109 aa12.09□□□□□ -0.47
CLN3-227ENST00000567495 CSDC2Q9Y534 153 aaKnown RBP12.09□□□□□ -0.47
CLN3-227ENST00000567495 SRRM2Q9UQ35 2752 aaKnown RBP12.08□□□□□ -0.48
CLN3-227ENST00000567495 MT-ND4LP03901 98 aa12.08□□□□□ -0.48
CLN3-227ENST00000567495 CLLU1Q5K131 121 aa12.08□□□□□ -0.48
CLN3-227ENST00000567495 MRPL54Q6P161 138 aaKnown RBP12.08□□□□□ -0.48
CLN3-227ENST00000567495 TMEM18Q96B42 140 aa12.08□□□□□ -0.48
CLN3-227ENST00000567495 CDC42SE2Q9NRR3 84 aa12.08□□□□□ -0.48
CLN3-227ENST00000567495 PHOX2AO14813 284 aa12.07□□□□□ -0.48
CLN3-227ENST00000567495 SDIM1Q6ZPB5 146 aa12.07□□□□□ -0.48
CLN3-227ENST00000567495 ZNF664Q8N3J9 261 aa12.07□□□□□ -0.48
CLN3-227ENST00000567495 ANAPC16Q96DE5 110 aa12.07□□□□□ -0.48
CLN3-227ENST00000567495 LINC00959A0A1B0GUT2 108 aa12.06□□□□□ -0.48
CLN3-227ENST00000567495 CCL25O15444 150 aa12.06□□□□□ -0.48
CLN3-227ENST00000567495 TNFRSF6BO95407 300 aa12.06□□□□□ -0.48
CLN3-227ENST00000567495 SS18Q15532 418 aa12.06□□□□□ -0.48
CLN3-227ENST00000567495 IGHV3-64A0A075B6Q5 118 aa12.05□□□□□ -0.48
CLN3-227ENST00000567495 FOXI1Q12951 378 aa12.05□□□□□ -0.48
CLN3-227ENST00000567495 C15orf56Q8N910 161 aa12.05□□□□□ -0.48
CLN3-227ENST00000567495 D6R8Y8 96 aa12.04□□□□□ -0.48
CLN3-227ENST00000567495 XCL1P47992 114 aa12.04□□□□□ -0.48
CLN3-227ENST00000567495 TIMM21Q9BVV7 248 aa12.04□□□□□ -0.48
CLN3-227ENST00000567495 VPS13BQ7Z7G8 4022 aa12.03□□□□□ -0.48
CLN3-227ENST00000567495 GVQW2A0A096LPI5 108 aaPredicted RBP12.03□□□□□ -0.48
CLN3-227ENST00000567495 CD164L2Q6UWJ8 174 aa12.03□□□□□ -0.48
CLN3-227ENST00000567495 SMIM2Q9BVW6 85 aa12.03□□□□□ -0.48
CLN3-227ENST00000567495 UBE2D4Q9Y2X8 147 aa12.03□□□□□ -0.48
CLN3-227ENST00000567495 C1orf196B1AJZ1 125 aa12.02□□□□□ -0.49
CLN3-227ENST00000567495 SLPIP03973 132 aa12.02□□□□□ -0.49
CLN3-227ENST00000567495 UQCC3Q6UW78 93 aa12.02□□□□□ -0.49
CLN3-227ENST00000567495 ORMDL3Q8N138 153 aa12.02□□□□□ -0.49
CLN3-227ENST00000567495 FLG2Q5D862 2391 aaPredicted RBP12.01□□□□□ -0.49
CLN3-227ENST00000567495 IGHV1-58A0A0C4DH39 117 aa12.01□□□□□ -0.49
CLN3-227ENST00000567495 NPYP01303 97 aa12□□□□□ -0.49
CLN3-227ENST00000567495 CIRBPQ14011 172 aaKnown RBP12□□□□□ -0.49
CLN3-227ENST00000567495 TMEM136Q6ZRR5 245 aa12□□□□□ -0.49
CLN3-227ENST00000567495 LAMTOR2Q9Y2Q5 125 aa12□□□□□ -0.49
CLN3-227ENST00000567495 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP12□□□□□ -0.49
CLN3-227ENST00000567495 DMBT1Q9UGM3 2413 aaPredicted RBP12□□□□□ -0.49
CLN3-227ENST00000567495 HIGD2BQ4VC39 106 aa11.99□□□□□ -0.49
CLN3-227ENST00000567495 RAB5AP20339 215 aa11.98□□□□□ -0.49
CLN3-227ENST00000567495 DPH3Q96FX2 82 aa11.98□□□□□ -0.49
CLN3-227ENST00000567495 PRELID3AQ96N28 172 aa11.98□□□□□ -0.49
CLN3-227ENST00000567495 SPANXA1Q9NS26 97 aa11.98□□□□□ -0.49
CLN3-227ENST00000567495 PKIGQ9Y2B9 76 aa11.98□□□□□ -0.49
CLN3-227ENST00000567495 IMMP2LQ96T52 175 aa11.97□□□□□ -0.49
CLN3-227ENST00000567495 TRAV13-1A0A0B4J241 112 aa11.96□□□□□ -0.49
CLN3-227ENST00000567495 COX7A2LO14548 114 aa11.96□□□□□ -0.49
CLN3-227ENST00000567495 TMEM218A2RU14 115 aa11.95□□□□□ -0.5
CLN3-227ENST00000567495 PRSS47A8MTI9 375 aa11.95□□□□□ -0.5
CLN3-227ENST00000567495 MALP21145 153 aa11.95□□□□□ -0.5
CLN3-227ENST00000567495 MRPS36P82909 103 aaKnown RBP11.95□□□□□ -0.5
CLN3-227ENST00000567495 IFITM2Q01629 132 aa11.95□□□□□ -0.5
CLN3-227ENST00000567495 PANO1I0J062 215 aa11.94□□□□□ -0.5
CLN3-227ENST00000567495 ZNF561-AS1K7EIQ3 104 aa11.94□□□□□ -0.5
CLN3-227ENST00000567495 RPL39P62891 51 aaKnown RBP11.94□□□□□ -0.5
CLN3-227ENST00000567495 Q6ZUT4 128 aa11.94□□□□□ -0.5
CLN3-227ENST00000567495 SPACA4Q8TDM5 124 aa11.94□□□□□ -0.5
CLN3-227ENST00000567495 CTDSP1Q9GZU7 261 aa11.94□□□□□ -0.5
CLN3-227ENST00000567495 RPL37AP61513 92 aaKnown RBP11.93□□□□□ -0.5
CLN3-227ENST00000567495 COX6A2Q02221 97 aa11.93□□□□□ -0.5
CLN3-227ENST00000567495 RNASE13Q5GAN3 156 aaKnown RBP11.93□□□□□ -0.5
CLN3-227ENST00000567495 MAP1LC3AQ9H492 121 aa11.93□□□□□ -0.5
CLN3-227ENST00000567495 MYCBP2O75592 4640 aa11.92□□□□□ -0.5
CLN3-227ENST00000567495 KRTAP10-4P60372 401 aaPredicted RBP11.92□□□□□ -0.5
CLN3-227ENST00000567495 LINC00474Q9P2X8 69 aa11.92□□□□□ -0.5
CLN3-227ENST00000567495 TRAV9-1A0A075B6T8 112 aa11.91□□□□□ -0.5
CLN3-227ENST00000567495 A0A087WYN8 130 aa11.91□□□□□ -0.5
CLN3-227ENST00000567495 APOMO95445 188 aa11.91□□□□□ -0.5
CLN3-227ENST00000567495 CARD19Q96LW7 228 aa11.91□□□□□ -0.5
CLN3-227ENST00000567495 SEC11CQ9BY50 192 aa11.91□□□□□ -0.5
CLN3-227ENST00000567495 PLAC8Q9NZF1 115 aa11.91□□□□□ -0.5
CLN3-227ENST00000567495 PYGO1Q9Y3Y4 419 aa11.91□□□□□ -0.5
CLN3-227ENST00000567495 K7EMI3 77 aa11.9□□□□□ -0.5
CLN3-227ENST00000567495 CHTF8P0CG12 524 aa11.9□□□□□ -0.5
CLN3-227ENST00000567495 IFI27P40305 119 aaPredicted RBP11.9□□□□□ -0.5
CLN3-227ENST00000567495 SYCNQ0VAF6 134 aa11.9□□□□□ -0.5
CLN3-227ENST00000567495 PRSS3P2Q8NHM4 247 aa11.9□□□□□ -0.5
CLN3-227ENST00000567495 ADCYAP1P18509 176 aa11.89□□□□□ -0.51
CLN3-227ENST00000567495 Q8N8P6 123 aa11.89□□□□□ -0.51
CLN3-227ENST00000567495 LOC389332A0A1B0GUA5 103 aa11.88□□□□□ -0.51
CLN3-227ENST00000567495 J3QL48 77 aa11.88□□□□□ -0.51
CLN3-227ENST00000567495 FAM104AQ969W3 186 aa11.88□□□□□ -0.51
CLN3-227ENST00000567495 IFITM10A6NMD0 228 aa11.87□□□□□ -0.51
CLN3-227ENST00000567495 KRTAP29-1A8MX34 341 aaPredicted RBP11.87□□□□□ -0.51
CLN3-227ENST00000567495 MAJINQ3KP22 176 aa11.87□□□□□ -0.51
CLN3-227ENST00000567495 C5orf38Q86SI9 138 aa11.87□□□□□ -0.51
CLN3-227ENST00000567495 LINC00526Q96FQ7 95 aa11.87□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 126.7 ms