RNA–Protein interactions for RNA: ENST00000566040.1

CLN3-220, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-220ENST00000566040 SLPIP03973 132 aa6.4□□□□□ -1.38
CLN3-220ENST00000566040 S100A8P05109 93 aa6.4□□□□□ -1.38
CLN3-220ENST00000566040 RHEBQ15382 184 aa6.4□□□□□ -1.38
CLN3-220ENST00000566040 Q6ZUT4 128 aa6.4□□□□□ -1.38
CLN3-220ENST00000566040 ORMDL3Q8N138 153 aa6.4□□□□□ -1.38
CLN3-220ENST00000566040 PRELID3AQ96N28 172 aa6.4□□□□□ -1.38
CLN3-220ENST00000566040 CDC42SE2Q9NRR3 84 aa6.4□□□□□ -1.38
CLN3-220ENST00000566040 IGLV2-33A0A075B6J2 118 aaPredicted RBP6.39□□□□□ -1.39
CLN3-220ENST00000566040 TCAPO15273 167 aa6.39□□□□□ -1.39
CLN3-220ENST00000566040 PPP1R17O96001 155 aa6.39□□□□□ -1.39
CLN3-220ENST00000566040 HLA-DQA1P01909 254 aa6.39□□□□□ -1.39
CLN3-220ENST00000566040 ZNF25P17030 456 aaPredicted RBP6.39□□□□□ -1.39
CLN3-220ENST00000566040 HAMPP81172 84 aa6.39□□□□□ -1.39
CLN3-220ENST00000566040 FOXI1Q12951 378 aa6.39□□□□□ -1.39
CLN3-220ENST00000566040 KIAA1644Q3SXP7 199 aa6.39□□□□□ -1.39
CLN3-220ENST00000566040 RNASE13Q5GAN3 156 aaKnown RBP6.39□□□□□ -1.39
CLN3-220ENST00000566040 SLC7A5P1Q8MH63 180 aa6.39□□□□□ -1.39
CLN3-220ENST00000566040 RMI2Q96E14 147 aa6.39□□□□□ -1.39
CLN3-220ENST00000566040 COX11Q9Y6N1 276 aa6.39□□□□□ -1.39
CLN3-220ENST00000566040 IGLV5-52A0A0A0MRZ9 124 aa6.38□□□□□ -1.39
CLN3-220ENST00000566040 TGIF2-C20orf24A0A0A6YYL0 155 aa6.38□□□□□ -1.39
CLN3-220ENST00000566040 UBE2L6O14933 153 aa6.38□□□□□ -1.39
CLN3-220ENST00000566040 RNASEKQ6P5S7 137 aaKnown RBP6.38□□□□□ -1.39
CLN3-220ENST00000566040 OR5A1Q8NGJ0 315 aa6.38□□□□□ -1.39
CLN3-220ENST00000566040 OPRPNQ99935 248 aaPredicted RBP6.38□□□□□ -1.39
CLN3-220ENST00000566040 TIMM21Q9BVV7 248 aa6.38□□□□□ -1.39
CLN3-220ENST00000566040 RPS10P5Q9NQ39 176 aa6.38□□□□□ -1.39
CLN3-220ENST00000566040 CSDC2Q9Y534 153 aaKnown RBP6.38□□□□□ -1.39
CLN3-220ENST00000566040 TRAV8-4A0A0B4J246 113 aa6.37□□□□□ -1.39
CLN3-220ENST00000566040 LINC00959A0A1B0GUT2 108 aa6.37□□□□□ -1.39
CLN3-220ENST00000566040 EREGO14944 169 aa6.37□□□□□ -1.39
CLN3-220ENST00000566040 APOC3P02656 99 aa6.37□□□□□ -1.39
CLN3-220ENST00000566040 GCSHP23434 173 aa6.37□□□□□ -1.39
CLN3-220ENST00000566040 LINC00173Q6ZV60 143 aa6.37□□□□□ -1.39
CLN3-220ENST00000566040 ZNF664Q8N3J9 261 aa6.37□□□□□ -1.39
CLN3-220ENST00000566040 CHCHD10Q8WYQ3 142 aaPredicted RBP6.37□□□□□ -1.39
CLN3-220ENST00000566040 LAMTOR2Q9Y2Q5 125 aa6.37□□□□□ -1.39
CLN3-220ENST00000566040 IGKV3OR2-268A0A0C4DH90 116 aa6.36□□□□□ -1.39
CLN3-220ENST00000566040 GAGE12HA6NDE8 117 aa6.36□□□□□ -1.39
CLN3-220ENST00000566040 LINC01546A6NGU7 62 aa6.36□□□□□ -1.39
CLN3-220ENST00000566040 PANO1I0J062 215 aa6.36□□□□□ -1.39
CLN3-220ENST00000566040 AMMECR1LQ6DCA0 310 aa6.36□□□□□ -1.39
CLN3-220ENST00000566040 Q8N8P6 123 aa6.36□□□□□ -1.39
CLN3-220ENST00000566040 URB1-AS1Q96HZ7 61 aa6.36□□□□□ -1.39
CLN3-220ENST00000566040 KIR2DL4Q99706 377 aa6.36□□□□□ -1.39
CLN3-220ENST00000566040 ALKBH7Q9BT30 221 aaPredicted RBP6.36□□□□□ -1.39
CLN3-220ENST00000566040 GNB1LQ9BYB4 327 aa6.36□□□□□ -1.39
CLN3-220ENST00000566040 LOC389332A0A1B0GUA5 103 aa6.35□□□□□ -1.39
CLN3-220ENST00000566040 CCL25O15444 150 aa6.35□□□□□ -1.39
CLN3-220ENST00000566040 FCER1GP30273 86 aa6.35□□□□□ -1.39
CLN3-220ENST00000566040 IFI27P40305 119 aaPredicted RBP6.35□□□□□ -1.39
CLN3-220ENST00000566040 MYCBP2O75592 4640 aa6.35□□□□□ -1.39
CLN3-220ENST00000566040 IGLV4-3A0A075B6K6 122 aa6.34□□□□□ -1.39
CLN3-220ENST00000566040 A0A096LNJ9 63 aa6.34□□□□□ -1.39
CLN3-220ENST00000566040 MRPS36P82909 103 aaKnown RBP6.34□□□□□ -1.39
CLN3-220ENST00000566040 ZC2HC1BQ5TFG8 222 aa6.34□□□□□ -1.39
CLN3-220ENST00000566040 SVBPQ8N300 66 aa6.34□□□□□ -1.39
CLN3-220ENST00000566040 MAP1LC3AQ9H492 121 aa6.34□□□□□ -1.39
CLN3-220ENST00000566040 GVQW2A0A096LPI5 108 aaPredicted RBP6.33□□□□□ -1.4
CLN3-220ENST00000566040 IGIPA6NJ69 53 aa6.33□□□□□ -1.4
CLN3-220ENST00000566040 XCL1P47992 114 aa6.33□□□□□ -1.4
CLN3-220ENST00000566040 CNBPP62633 177 aaKnown RBP6.33□□□□□ -1.4
CLN3-220ENST00000566040 CBLN2Q8IUK8 224 aa6.33□□□□□ -1.4
CLN3-220ENST00000566040 Q8N1X5 172 aa6.33□□□□□ -1.4
CLN3-220ENST00000566040 MRPL18Q9H0U6 180 aaKnown RBP6.33□□□□□ -1.4
CLN3-220ENST00000566040 SPANXA1Q9NS26 97 aa6.33□□□□□ -1.4
CLN3-220ENST00000566040 SNAPINO95295 136 aa6.32□□□□□ -1.4
CLN3-220ENST00000566040 KRTAP10-4P60372 401 aaPredicted RBP6.32□□□□□ -1.4
CLN3-220ENST00000566040 C9orf163Q8N9P6 203 aa6.32□□□□□ -1.4
CLN3-220ENST00000566040 LINC00526Q96FQ7 95 aa6.32□□□□□ -1.4
CLN3-220ENST00000566040 PYGO1Q9Y3Y4 419 aa6.32□□□□□ -1.4
CLN3-220ENST00000566040 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP6.32□□□□□ -1.4
CLN3-220ENST00000566040 IGHV3OR16-9A0A0B4J2B5 98 aa6.31□□□□□ -1.4
CLN3-220ENST00000566040 S100PP25815 95 aa6.31□□□□□ -1.4
CLN3-220ENST00000566040 CIRBPQ14011 172 aaKnown RBP6.31□□□□□ -1.4
CLN3-220ENST00000566040 HIGD2BQ4VC39 106 aa6.31□□□□□ -1.4
CLN3-220ENST00000566040 CD164L2Q6UWJ8 174 aa6.31□□□□□ -1.4
CLN3-220ENST00000566040 C2orf66Q6UXQ4 117 aa6.31□□□□□ -1.4
CLN3-220ENST00000566040 SDIM1Q6ZPB5 146 aa6.31□□□□□ -1.4
CLN3-220ENST00000566040 SCXQ7RTU7 201 aa6.31□□□□□ -1.4
CLN3-220ENST00000566040 C18orf32Q8TCD1 76 aa6.31□□□□□ -1.4
CLN3-220ENST00000566040 TMEM101Q96IK0 257 aa6.31□□□□□ -1.4
CLN3-220ENST00000566040 AMELXQ99217 191 aa6.31□□□□□ -1.4
CLN3-220ENST00000566040 MT-ND6P03923 174 aa6.3□□□□□ -1.4
CLN3-220ENST00000566040 COX6A2Q02221 97 aa6.3□□□□□ -1.4
CLN3-220ENST00000566040 C14orf177Q52M58 125 aa6.3□□□□□ -1.4
CLN3-220ENST00000566040 NXT2Q9NPJ8 142 aaKnown RBP6.3□□□□□ -1.4
CLN3-220ENST00000566040 TRAV13-1A0A0B4J241 112 aa6.29□□□□□ -1.4
CLN3-220ENST00000566040 hDV102S1A0JD36 115 aa6.29□□□□□ -1.4
CLN3-220ENST00000566040 SMR3BP02814 79 aaPredicted RBP6.29□□□□□ -1.4
CLN3-220ENST00000566040 COX19Q49B96 90 aa6.29□□□□□ -1.4
CLN3-220ENST00000566040 LINC00242Q5T6M2 205 aa6.29□□□□□ -1.4
CLN3-220ENST00000566040 DGAT2L7PQ6IED9 249 aa6.29□□□□□ -1.4
CLN3-220ENST00000566040 TOMM6Q96B49 74 aa6.29□□□□□ -1.4
CLN3-220ENST00000566040 FAT3Q8TDW7 4589 aa6.28□□□□□ -1.4
CLN3-220ENST00000566040 K7EMI3 77 aa6.28□□□□□ -1.4
CLN3-220ENST00000566040 CHTF8P0CG12 524 aa6.28□□□□□ -1.4
CLN3-220ENST00000566040 UBE2D1P51668 147 aa6.28□□□□□ -1.4
CLN3-220ENST00000566040 LINC00310P59036 64 aa6.28□□□□□ -1.4
CLN3-220ENST00000566040 FABP9Q0Z7S8 132 aa6.28□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 61.3 ms