RNA–Protein interactions for RNA: ENST00000563842.5

CLK3-213, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 860 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-213ENST00000563842 D6R8Y8 96 aa8.75□□□□□ -1.01
CLK3-213ENST00000563842 TNFRSF6BO95407 300 aa8.75□□□□□ -1.01
CLK3-213ENST00000563842 CFAP161Q6P656 301 aa8.75□□□□□ -1.01
CLK3-213ENST00000563842 ORMDL3Q8N138 153 aa8.75□□□□□ -1.01
CLK3-213ENST00000563842 EPM2AB3EWF7 344 aa8.74□□□□□ -1.01
CLK3-213ENST00000563842 IMMP2LQ96T52 175 aa8.74□□□□□ -1.01
CLK3-213ENST00000563842 CTDSP1Q9GZU7 261 aa8.74□□□□□ -1.01
CLK3-213ENST00000563842 AP5S1Q9NUS5 200 aa8.74□□□□□ -1.01
CLK3-213ENST00000563842 CSDC2Q9Y534 153 aaKnown RBP8.74□□□□□ -1.01
CLK3-213ENST00000563842 GAGE12HA6NDE8 117 aa8.73□□□□□ -1.01
CLK3-213ENST00000563842 PRSS1P07477 247 aa8.73□□□□□ -1.01
CLK3-213ENST00000563842 TMEM136Q6ZRR5 245 aa8.73□□□□□ -1.01
CLK3-213ENST00000563842 Q6ZSA8 131 aa8.73□□□□□ -1.01
CLK3-213ENST00000563842 ZNF664Q8N3J9 261 aa8.73□□□□□ -1.01
CLK3-213ENST00000563842 SMIM2Q9BVW6 85 aa8.73□□□□□ -1.01
CLK3-213ENST00000563842 SEC11CQ9BY50 192 aa8.73□□□□□ -1.01
CLK3-213ENST00000563842 CDC42SE2Q9NRR3 84 aa8.73□□□□□ -1.01
CLK3-213ENST00000563842 hDV102S1A0JD36 115 aa8.72□□□□□ -1.01
CLK3-213ENST00000563842 SS18Q15532 418 aa8.72□□□□□ -1.01
CLK3-213ENST00000563842 CHCHD10Q8WYQ3 142 aaPredicted RBP8.72□□□□□ -1.01
CLK3-213ENST00000563842 PRELID3AQ96N28 172 aa8.72□□□□□ -1.01
CLK3-213ENST00000563842 KRTAP4-5Q9BYR2 181 aa8.72□□□□□ -1.01
CLK3-213ENST00000563842 FAM30AQ9NZY2 134 aa8.72□□□□□ -1.01
CLK3-213ENST00000563842 LAMTOR2Q9Y2Q5 125 aa8.72□□□□□ -1.01
CLK3-213ENST00000563842 UBR4Q5T4S7 5183 aa8.71□□□□□ -1.01
CLK3-213ENST00000563842 TRAV16A0A0A6YYK6 109 aaPredicted RBP8.71□□□□□ -1.02
CLK3-213ENST00000563842 FAM229AH3BQW9 127 aa8.71□□□□□ -1.02
CLK3-213ENST00000563842 CCL25O15444 150 aa8.71□□□□□ -1.02
CLK3-213ENST00000563842 NPYP01303 97 aa8.71□□□□□ -1.02
CLK3-213ENST00000563842 ADCYAP1P18509 176 aa8.71□□□□□ -1.02
CLK3-213ENST00000563842 LINC01620Q4KN68 170 aa8.71□□□□□ -1.02
CLK3-213ENST00000563842 COMMD7Q86VX2 200 aa8.71□□□□□ -1.02
CLK3-213ENST00000563842 C9orf163Q8N9P6 203 aa8.71□□□□□ -1.02
CLK3-213ENST00000563842 TIMM21Q9BVV7 248 aa8.71□□□□□ -1.02
CLK3-213ENST00000563842 TRAV9-1A0A075B6T8 112 aa8.7□□□□□ -1.02
CLK3-213ENST00000563842 LINC00959A0A1B0GUT2 108 aa8.7□□□□□ -1.02
CLK3-213ENST00000563842 RAB5AP20339 215 aa8.7□□□□□ -1.02
CLK3-213ENST00000563842 UBE2D4Q9Y2X8 147 aa8.7□□□□□ -1.02
CLK3-213ENST00000563842 C1orf196B1AJZ1 125 aa8.69□□□□□ -1.02
CLK3-213ENST00000563842 SMR3BP02814 79 aaPredicted RBP8.69□□□□□ -1.02
CLK3-213ENST00000563842 S100PP25815 95 aa8.69□□□□□ -1.02
CLK3-213ENST00000563842 CNBPP62633 177 aaKnown RBP8.69□□□□□ -1.02
CLK3-213ENST00000563842 MAP1LC3AQ9H492 121 aa8.69□□□□□ -1.02
CLK3-213ENST00000563842 PRSS47A8MTI9 375 aa8.68□□□□□ -1.02
CLK3-213ENST00000563842 XCL1P47992 114 aa8.68□□□□□ -1.02
CLK3-213ENST00000563842 HAMPP81172 84 aa8.68□□□□□ -1.02
CLK3-213ENST00000563842 Q5VSD8 79 aa8.68□□□□□ -1.02
CLK3-213ENST00000563842 CHAC1Q9BUX1 264 aa8.68□□□□□ -1.02
CLK3-213ENST00000563842 FOXI1Q12951 378 aa8.67□□□□□ -1.02
CLK3-213ENST00000563842 CD164L2Q6UWJ8 174 aa8.67□□□□□ -1.02
CLK3-213ENST00000563842 SPANXA1Q9NS26 97 aa8.67□□□□□ -1.02
CLK3-213ENST00000563842 IGHV3-64A0A075B6Q5 118 aa8.66□□□□□ -1.02
CLK3-213ENST00000563842 IGHV1-58A0A0C4DH39 117 aa8.66□□□□□ -1.02
CLK3-213ENST00000563842 C10orf91Q5T1B1 145 aa8.66□□□□□ -1.02
CLK3-213ENST00000563842 C15orf56Q8N910 161 aa8.66□□□□□ -1.02
CLK3-213ENST00000563842 GVQW2A0A096LPI5 108 aaPredicted RBP8.65□□□□□ -1.02
CLK3-213ENST00000563842 K7EMI3 77 aa8.65□□□□□ -1.02
CLK3-213ENST00000563842 RPL39P62891 51 aaKnown RBP8.65□□□□□ -1.02
CLK3-213ENST00000563842 RHEBQ15382 184 aa8.65□□□□□ -1.02
CLK3-213ENST00000563842 COX19Q49B96 90 aa8.65□□□□□ -1.02
CLK3-213ENST00000563842 SCXQ7RTU7 201 aa8.65□□□□□ -1.02
CLK3-213ENST00000563842 CARHSP1Q9Y2V2 147 aaKnown RBP8.65□□□□□ -1.02
CLK3-213ENST00000563842 DMBT1Q9UGM3 2413 aaPredicted RBP8.65□□□□□ -1.02
CLK3-213ENST00000563842 DNAH8Q96JB1 4490 aa8.64□□□□□ -1.03
CLK3-213ENST00000563842 LOC389332A0A1B0GUA5 103 aa8.64□□□□□ -1.03
CLK3-213ENST00000563842 PLA2G1BP04054 148 aaKnown RBP8.64□□□□□ -1.03
CLK3-213ENST00000563842 IFI27P40305 119 aaPredicted RBP8.64□□□□□ -1.03
CLK3-213ENST00000563842 MRPS36P82909 103 aaKnown RBP8.64□□□□□ -1.03
CLK3-213ENST00000563842 HIGD2BQ4VC39 106 aa8.64□□□□□ -1.03
CLK3-213ENST00000563842 Q6ZUT4 128 aa8.64□□□□□ -1.03
CLK3-213ENST00000563842 Q8N8P6 123 aa8.64□□□□□ -1.03
CLK3-213ENST00000563842 PKIGQ9Y2B9 76 aa8.64□□□□□ -1.03
CLK3-213ENST00000563842 TRAV13-1A0A0B4J241 112 aa8.63□□□□□ -1.03
CLK3-213ENST00000563842 MALP21145 153 aa8.63□□□□□ -1.03
CLK3-213ENST00000563842 G0S2P27469 103 aa8.63□□□□□ -1.03
CLK3-213ENST00000563842 ORMDL2Q53FV1 153 aa8.63□□□□□ -1.03
CLK3-213ENST00000563842 RNASE13Q5GAN3 156 aaKnown RBP8.63□□□□□ -1.03
CLK3-213ENST00000563842 SDIM1Q6ZPB5 146 aa8.63□□□□□ -1.03
CLK3-213ENST00000563842 CIRBP-AS1Q8TBR5 109 aa8.63□□□□□ -1.03
CLK3-213ENST00000563842 NXT2Q9NPJ8 142 aaKnown RBP8.63□□□□□ -1.03
CLK3-213ENST00000563842 PYGO1Q9Y3Y4 419 aa8.63□□□□□ -1.03
CLK3-213ENST00000563842 ZNF561-AS1K7EIQ3 104 aa8.62□□□□□ -1.03
CLK3-213ENST00000563842 COX7A2LO14548 114 aa8.62□□□□□ -1.03
CLK3-213ENST00000563842 SLPIP03973 132 aa8.62□□□□□ -1.03
CLK3-213ENST00000563842 INAFM2P0DMQ5 153 aa8.62□□□□□ -1.03
CLK3-213ENST00000563842 NDUFA5Q16718 116 aa8.62□□□□□ -1.03
CLK3-213ENST00000563842 LINC00528Q8N1L1 170 aa8.62□□□□□ -1.03
CLK3-213ENST00000563842 GNB1LQ9BYB4 327 aa8.62□□□□□ -1.03
CLK3-213ENST00000563842 RPS10P5Q9NQ39 176 aa8.62□□□□□ -1.03
CLK3-213ENST00000563842 APOMO95445 188 aa8.61□□□□□ -1.03
CLK3-213ENST00000563842 CYSLTR1Q9Y271 337 aa8.61□□□□□ -1.03
CLK3-213ENST00000563842 IFITM10A6NMD0 228 aa8.6□□□□□ -1.03
CLK3-213ENST00000563842 MT-ND6P03923 174 aa8.6□□□□□ -1.03
CLK3-213ENST00000563842 DPH3Q96FX2 82 aa8.6□□□□□ -1.03
CLK3-213ENST00000563842 C2orf66Q6UXQ4 117 aa8.59□□□□□ -1.03
CLK3-213ENST00000563842 TMEM141Q96I45 108 aa8.59□□□□□ -1.03
CLK3-213ENST00000563842 SNAPINO95295 136 aa8.58□□□□□ -1.04
CLK3-213ENST00000563842 APOC3P02656 99 aa8.58□□□□□ -1.04
CLK3-213ENST00000563842 NPSP0C0P6 89 aa8.58□□□□□ -1.04
CLK3-213ENST00000563842 CIRBPQ14011 172 aaKnown RBP8.58□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 51.8 ms