RNA–Protein interactions for RNA: ENST00000563692.1

VPS39-207, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 4

Gene VPS39, Length 587 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-207ENST00000563692 C2orf88Q9BSF0 95 aa6.28□□□□□ -1.4
VPS39-207ENST00000563692 UBE2D4Q9Y2X8 147 aa6.28□□□□□ -1.4
VPS39-207ENST00000563692 IGLV4-3A0A075B6K6 122 aa6.27□□□□□ -1.41
VPS39-207ENST00000563692 IGKV2D-29A0A075B6S2 120 aaPredicted RBP6.27□□□□□ -1.41
VPS39-207ENST00000563692 IGKV2-29A2NJV5 120 aaPredicted RBP6.27□□□□□ -1.41
VPS39-207ENST00000563692 NUPR2A6NF83 97 aa6.27□□□□□ -1.41
VPS39-207ENST00000563692 GYPEP15421 78 aa6.27□□□□□ -1.41
VPS39-207ENST00000563692 HERVK_113P61574 105 aa6.27□□□□□ -1.41
VPS39-207ENST00000563692 MRPS36P82909 103 aaKnown RBP6.27□□□□□ -1.41
VPS39-207ENST00000563692 AMMECR1LQ6DCA0 310 aa6.27□□□□□ -1.41
VPS39-207ENST00000563692 SH2D6Q7Z4S9 175 aa6.27□□□□□ -1.41
VPS39-207ENST00000563692 MRPL52Q86TS9 123 aaKnown RBP6.27□□□□□ -1.41
VPS39-207ENST00000563692 ATP6V0E2Q8NHE4 81 aa6.27□□□□□ -1.41
VPS39-207ENST00000563692 TMEM243Q9BU79 118 aa6.27□□□□□ -1.41
VPS39-207ENST00000563692 MRPS16Q9Y3D3 137 aaKnown RBP6.27□□□□□ -1.41
VPS39-207ENST00000563692 CSDC2Q9Y534 153 aaKnown RBP6.27□□□□□ -1.41
VPS39-207ENST00000563692 LOC100131303A0A0U1RQF7 123 aa6.26□□□□□ -1.41
VPS39-207ENST00000563692 F5H768 121 aa6.26□□□□□ -1.41
VPS39-207ENST00000563692 M0R143 59 aa6.26□□□□□ -1.41
VPS39-207ENST00000563692 DLEU1O43261 78 aa6.26□□□□□ -1.41
VPS39-207ENST00000563692 NMUP48645 174 aa6.26□□□□□ -1.41
VPS39-207ENST00000563692 ANKRD39Q53RE8 183 aa6.26□□□□□ -1.41
VPS39-207ENST00000563692 AMELXQ99217 191 aa6.26□□□□□ -1.41
VPS39-207ENST00000563692 KLK5Q9Y337 293 aaPredicted RBP6.26□□□□□ -1.41
VPS39-207ENST00000563692 TENM2Q9NT68 2774 aa6.26□□□□□ -1.41
VPS39-207ENST00000563692 TRBV6-8A0A0A6YYG3 113 aa6.25□□□□□ -1.41
VPS39-207ENST00000563692 SIVA1O15304 175 aa6.25□□□□□ -1.41
VPS39-207ENST00000563692 FGF6P10767 208 aa6.25□□□□□ -1.41
VPS39-207ENST00000563692 ZNF25P17030 456 aaPredicted RBP6.25□□□□□ -1.41
VPS39-207ENST00000563692 SEC11AP67812 179 aa6.25□□□□□ -1.41
VPS39-207ENST00000563692 CTAG1AP78358 180 aa6.25□□□□□ -1.41
VPS39-207ENST00000563692 MRPL23Q16540 153 aaKnown RBP6.25□□□□□ -1.41
VPS39-207ENST00000563692 LBHQ53QV2 105 aaPredicted RBP6.25□□□□□ -1.41
VPS39-207ENST00000563692 NTM-AS1Q6ZSK4 140 aa6.25□□□□□ -1.41
VPS39-207ENST00000563692 NFE4Q86UQ8 179 aa6.25□□□□□ -1.41
VPS39-207ENST00000563692 BOD1L2Q8IYS8 172 aa6.25□□□□□ -1.41
VPS39-207ENST00000563692 OR5A1Q8NGJ0 315 aa6.25□□□□□ -1.41
VPS39-207ENST00000563692 OPRPNQ99935 248 aaPredicted RBP6.25□□□□□ -1.41
VPS39-207ENST00000563692 C11orf68Q9H3H3 251 aaKnown RBP6.25□□□□□ -1.41
VPS39-207ENST00000563692 IGLV4-69A0A075B6H9 119 aa6.24□□□□□ -1.41
VPS39-207ENST00000563692 TRAV26-1A0A087WT03 109 aa6.24□□□□□ -1.41
VPS39-207ENST00000563692 C11orf86A6NJI1 115 aa6.24□□□□□ -1.41
VPS39-207ENST00000563692 LINC00694P0DN24 101 aa6.24□□□□□ -1.41
VPS39-207ENST00000563692 TMEM170BQ5T4T1 132 aa6.24□□□□□ -1.41
VPS39-207ENST00000563692 CEMP1Q6PRD7 247 aaPredicted RBP6.24□□□□□ -1.41
VPS39-207ENST00000563692 CHCHD5Q9BSY4 110 aa6.24□□□□□ -1.41
VPS39-207ENST00000563692 CELA1Q9UNI1 258 aa6.24□□□□□ -1.41
VPS39-207ENST00000563692 NACAE9PAV3 2078 aa6.24□□□□□ -1.41
VPS39-207ENST00000563692 DNAH7Q8WXX0 4024 aa6.23□□□□□ -1.41
VPS39-207ENST00000563692 A0A0J9YY99 117 aa6.23□□□□□ -1.41
VPS39-207ENST00000563692 TINCRA0A1B0GVN0 87 aa6.23□□□□□ -1.41
VPS39-207ENST00000563692 E9PLD3 99 aa6.23□□□□□ -1.41
VPS39-207ENST00000563692 HTN3P15516 51 aa6.23□□□□□ -1.41
VPS39-207ENST00000563692 C12orf74Q32Q52 190 aa6.23□□□□□ -1.41
VPS39-207ENST00000563692 C11orf45Q8TAV5 145 aa6.23□□□□□ -1.41
VPS39-207ENST00000563692 CHAC1Q9BUX1 264 aa6.23□□□□□ -1.41
VPS39-207ENST00000563692 GEMIN7Q9H840 131 aaKnown RBP6.23□□□□□ -1.41
VPS39-207ENST00000563692 ICOSQ9Y6W8 199 aa6.23□□□□□ -1.41
VPS39-207ENST00000563692 A0A0J9YXV3 536 aa6.22□□□□□ -1.41
VPS39-207ENST00000563692 TMEM262E9PQX1 116 aa6.22□□□□□ -1.41
VPS39-207ENST00000563692 H3BNG1 76 aa6.22□□□□□ -1.41
VPS39-207ENST00000563692 LY6G6CO95867 125 aa6.22□□□□□ -1.41
VPS39-207ENST00000563692 TCTAP57738 103 aa6.22□□□□□ -1.41
VPS39-207ENST00000563692 TIRAPP58753 221 aa6.22□□□□□ -1.41
VPS39-207ENST00000563692 GAGE6Q13070 117 aa6.22□□□□□ -1.41
VPS39-207ENST00000563692 VSIG2Q96IQ7 327 aa6.22□□□□□ -1.41
VPS39-207ENST00000563692 CDC42SE2Q9NRR3 84 aa6.22□□□□□ -1.41
VPS39-207ENST00000563692 TRAV8-6A0A0B4J262 113 aa6.21□□□□□ -1.42
VPS39-207ENST00000563692 H3BRM9 83 aa6.21□□□□□ -1.42
VPS39-207ENST00000563692 HERVK_113P63121 156 aa6.21□□□□□ -1.42
VPS39-207ENST00000563692 Q6ZUT4 128 aa6.21□□□□□ -1.42
VPS39-207ENST00000563692 PCP2Q8IVA1 136 aa6.21□□□□□ -1.42
VPS39-207ENST00000563692 LINC00476Q8WZB0 136 aa6.21□□□□□ -1.42
VPS39-207ENST00000563692 IGKV2D-26A0A0A0MRZ7 120 aa6.2□□□□□ -1.42
VPS39-207ENST00000563692 MYMXA0A1B0GTQ4 84 aa6.2□□□□□ -1.42
VPS39-207ENST00000563692 A0A1B0GUV1 79 aa6.2□□□□□ -1.42
VPS39-207ENST00000563692 TMEM223A0PJW6 202 aa6.2□□□□□ -1.42
VPS39-207ENST00000563692 LEPROTO15243 131 aa6.2□□□□□ -1.42
VPS39-207ENST00000563692 UBE2D1P51668 147 aa6.2□□□□□ -1.42
VPS39-207ENST00000563692 NANOS2P60321 138 aaKnown RBP6.2□□□□□ -1.42
VPS39-207ENST00000563692 RNASE13Q5GAN3 156 aaKnown RBP6.2□□□□□ -1.42
VPS39-207ENST00000563692 FAM19A3Q7Z5A8 133 aa6.2□□□□□ -1.42
VPS39-207ENST00000563692 FAM104AQ969W3 186 aa6.2□□□□□ -1.42
VPS39-207ENST00000563692 PLEKHB2Q96CS7 222 aa6.2□□□□□ -1.42
VPS39-207ENST00000563692 HIGD1BQ9P298 99 aa6.2□□□□□ -1.42
VPS39-207ENST00000563692 A0A096LPF7 62 aa6.19□□□□□ -1.42
VPS39-207ENST00000563692 ZNF22P17026 224 aaPredicted RBP6.19□□□□□ -1.42
VPS39-207ENST00000563692 LGALS3P17931 250 aaKnown RBP6.19□□□□□ -1.42
VPS39-207ENST00000563692 BATFQ16520 125 aa6.19□□□□□ -1.42
VPS39-207ENST00000563692 SNHG12Q9BXW3 62 aa6.19□□□□□ -1.42
VPS39-207ENST00000563692 TRAV13-1A0A0B4J241 112 aa6.18□□□□□ -1.42
VPS39-207ENST00000563692 J3QQQ9 107 aa6.18□□□□□ -1.42
VPS39-207ENST00000563692 CCL25O15444 150 aa6.18□□□□□ -1.42
VPS39-207ENST00000563692 HINT1P49773 126 aaPredicted RBP6.18□□□□□ -1.42
VPS39-207ENST00000563692 HSD52Q0P140 79 aa6.18□□□□□ -1.42
VPS39-207ENST00000563692 COL5A1-AS1Q5SY13 56 aa6.18□□□□□ -1.42
VPS39-207ENST00000563692 LELP1Q5T871 98 aa6.18□□□□□ -1.42
VPS39-207ENST00000563692 C2orf91Q6ZV80 131 aa6.18□□□□□ -1.42
VPS39-207ENST00000563692 LINC00469Q8N7U9 141 aa6.18□□□□□ -1.42
VPS39-207ENST00000563692 MAPKAPK5-AS1Q8N8E1 139 aa6.18□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 224 ms