RNA–Protein interactions for RNA: ENST00000561258.1

VPS13C-210, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 3

Gene VPS13C, Length 614 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-210ENST00000561258 ZNF705BP0CI00 300 aaPredicted RBP2.06□□□□□ -2.08
VPS13C-210ENST00000561258 CCL18P55774 89 aa2.06□□□□□ -2.08
VPS13C-210ENST00000561258 DIAPH2-AS1Q14236 149 aa2.06□□□□□ -2.08
VPS13C-210ENST00000561258 RTL8BQ17RB0 113 aa2.06□□□□□ -2.08
VPS13C-210ENST00000561258 RNASE10Q5GAN6 216 aaKnown RBP2.06□□□□□ -2.08
VPS13C-210ENST00000561258 UNQ5815/PRO19632Q6UWF5 114 aa2.06□□□□□ -2.08
VPS13C-210ENST00000561258 C3orf62Q6ZUJ4 267 aa2.06□□□□□ -2.08
VPS13C-210ENST00000561258 FP248Q71RG6 208 aaPredicted RBP2.06□□□□□ -2.08
VPS13C-210ENST00000561258 Q8IYB0 196 aa2.06□□□□□ -2.08
VPS13C-210ENST00000561258 Q8N6K4 173 aa2.06□□□□□ -2.08
VPS13C-210ENST00000561258 SLC25A21Q9BQT8 299 aaPredicted RBP2.06□□□□□ -2.08
VPS13C-210ENST00000561258 MPC1Q9Y5U8 109 aa2.06□□□□□ -2.08
VPS13C-210ENST00000561258 NUBP2Q9Y5Y2 271 aa2.06□□□□□ -2.08
VPS13C-210ENST00000561258 PRORSD1PA6NEY8 169 aa2.05□□□□□ -2.08
VPS13C-210ENST00000561258 A8MWV9 139 aa2.05□□□□□ -2.08
VPS13C-210ENST00000561258 C5orf58C9J3I9 102 aa2.05□□□□□ -2.08
VPS13C-210ENST00000561258 F8W036 122 aa2.05□□□□□ -2.08
VPS13C-210ENST00000561258 TIMM17BO60830 172 aa2.05□□□□□ -2.08
VPS13C-210ENST00000561258 PFDN1O60925 122 aa2.05□□□□□ -2.08
VPS13C-210ENST00000561258 GADD45GO95257 159 aa2.05□□□□□ -2.08
VPS13C-210ENST00000561258 CXCL1P09341 107 aa2.05□□□□□ -2.08
VPS13C-210ENST00000561258 PLGLAQ15195 96 aa2.05□□□□□ -2.08
VPS13C-210ENST00000561258 TMEM128Q5BJH2 165 aa2.05□□□□□ -2.08
VPS13C-210ENST00000561258 EIF5AL1Q6IS14 154 aaKnown RBP2.05□□□□□ -2.08
VPS13C-210ENST00000561258 HAGHLQ6PII5 290 aaPredicted RBP2.05□□□□□ -2.08
VPS13C-210ENST00000561258 GRPEL2Q8TAA5 225 aa2.05□□□□□ -2.08
VPS13C-210ENST00000561258 TEX47Q8TBZ9 253 aa2.05□□□□□ -2.08
VPS13C-210ENST00000561258 LEAP2Q969E1 77 aa2.05□□□□□ -2.08
VPS13C-210ENST00000561258 ZNF625Q96I27 306 aaPredicted RBP2.05□□□□□ -2.08
VPS13C-210ENST00000561258 PPP3R2Q96LZ3 170 aa2.05□□□□□ -2.08
VPS13C-210ENST00000561258 CCDC32Q9BV29 185 aa2.05□□□□□ -2.08
VPS13C-210ENST00000561258 LPAP08519 4548 aa2.05□□□□□ -2.08
VPS13C-210ENST00000561258 ODAMA1E959 279 aa2.04□□□□□ -2.08
VPS13C-210ENST00000561258 CPSF4LA6NMK7 179 aaKnown RBP2.04□□□□□ -2.08
VPS13C-210ENST00000561258 CBLN1P23435 193 aa2.04□□□□□ -2.08
VPS13C-210ENST00000561258 TMBIM6P55061 237 aa2.04□□□□□ -2.08
VPS13C-210ENST00000561258 KRTAP12-3P60328 96 aa2.04□□□□□ -2.08
VPS13C-210ENST00000561258 MSMO1Q15800 293 aa2.04□□□□□ -2.08
VPS13C-210ENST00000561258 TOMM20LQ6UXN7 152 aa2.04□□□□□ -2.08
VPS13C-210ENST00000561258 PATE2Q6UY27 113 aa2.04□□□□□ -2.08
VPS13C-210ENST00000561258 LINC00311Q8N616 119 aa2.04□□□□□ -2.08
VPS13C-210ENST00000561258 LINC00467Q9BRT7 94 aa2.04□□□□□ -2.08
VPS13C-210ENST00000561258 OTORQ9NRC9 128 aa2.04□□□□□ -2.08
VPS13C-210ENST00000561258 A0A087WTM6 91 aa2.03□□□□□ -2.08
VPS13C-210ENST00000561258 ZNF736B4DX44 427 aaPredicted RBP2.03□□□□□ -2.08
VPS13C-210ENST00000561258 TSTD3H0UI37 97 aa2.03□□□□□ -2.08
VPS13C-210ENST00000561258 H3BUA1 57 aa2.03□□□□□ -2.08
VPS13C-210ENST00000561258 SPART-AS1P0CW21 52 aa2.03□□□□□ -2.08
VPS13C-210ENST00000561258 KRTAP10-4P60372 401 aaPredicted RBP2.03□□□□□ -2.08
VPS13C-210ENST00000561258 RPL37AP61513 92 aaKnown RBP2.03□□□□□ -2.08
VPS13C-210ENST00000561258 PHF5AQ7RTV0 110 aaKnown RBP2.03□□□□□ -2.08
VPS13C-210ENST00000561258 PRR15Q8IV56 129 aa2.03□□□□□ -2.08
VPS13C-210ENST00000561258 THEM6Q8WUY1 208 aa2.03□□□□□ -2.08
VPS13C-210ENST00000561258 TRAV5A0A0B4J249 113 aa2.02□□□□□ -2.09
VPS13C-210ENST00000561258 TRBV6-5A0A0K0K1A5 114 aa2.02□□□□□ -2.09
VPS13C-210ENST00000561258 H7BYZ3 331 aa2.02□□□□□ -2.09
VPS13C-210ENST00000561258 TPST1O60507 370 aa2.02□□□□□ -2.09
VPS13C-210ENST00000561258 MRPS14O60783 128 aaKnown RBP2.02□□□□□ -2.09
VPS13C-210ENST00000561258 S100GP29377 79 aa2.02□□□□□ -2.09
VPS13C-210ENST00000561258 S100A3P33764 101 aa2.02□□□□□ -2.09
VPS13C-210ENST00000561258 DEFA5Q01523 94 aa2.02□□□□□ -2.09
VPS13C-210ENST00000561258 PDE6HQ13956 83 aa2.02□□□□□ -2.09
VPS13C-210ENST00000561258 SURF2Q15527 256 aaPredicted RBP2.02□□□□□ -2.09
VPS13C-210ENST00000561258 IFT20Q8IY31 132 aa2.02□□□□□ -2.09
VPS13C-210ENST00000561258 OR5A2Q8NGI9 324 aa2.02□□□□□ -2.09
VPS13C-210ENST00000561258 BORCS8Q96FH0 119 aa2.02□□□□□ -2.09
VPS13C-210ENST00000561258 USMG5Q96IX5 58 aa2.02□□□□□ -2.09
VPS13C-210ENST00000561258 FAM103A1Q9BTL3 118 aaKnown RBP2.02□□□□□ -2.09
VPS13C-210ENST00000561258 C14orf132Q9NPU4 83 aa2.02□□□□□ -2.09
VPS13C-210ENST00000561258 TRGV2A0A075B6R0 118 aa2.01□□□□□ -2.09
VPS13C-210ENST00000561258 TRAV27A0A087WT01 109 aa2.01□□□□□ -2.09
VPS13C-210ENST00000561258 TRAV12-1A0A0B4J245 112 aa2.01□□□□□ -2.09
VPS13C-210ENST00000561258 TRDV1A0A1B0GX56 115 aa2.01□□□□□ -2.09
VPS13C-210ENST00000561258 TSPAN19P0C672 248 aa2.01□□□□□ -2.09
VPS13C-210ENST00000561258 SAMD13Q5VXD3 122 aa2.01□□□□□ -2.09
VPS13C-210ENST00000561258 PYDC1Q8WXC3 89 aa2.01□□□□□ -2.09
VPS13C-210ENST00000561258 ZC2HC1AQ96GY0 325 aa2.01□□□□□ -2.09
VPS13C-210ENST00000561258 TMEM14BQ9NUH8 114 aa2.01□□□□□ -2.09
VPS13C-210ENST00000561258 COA4Q9NYJ1 87 aa2.01□□□□□ -2.09
VPS13C-210ENST00000561258 MED31Q9Y3C7 131 aa2.01□□□□□ -2.09
VPS13C-210ENST00000561258 DNAJC15Q9Y5T4 150 aa2.01□□□□□ -2.09
VPS13C-210ENST00000561258 TRAV14DV4A0A0A6YYC5 116 aa2□□□□□ -2.09
VPS13C-210ENST00000561258 TMEM189A5PLL7 270 aa2□□□□□ -2.09
VPS13C-210ENST00000561258 APOC1P02654 83 aa2□□□□□ -2.09
VPS13C-210ENST00000561258 CD14P08571 375 aa2□□□□□ -2.09
VPS13C-210ENST00000561258 BCL2P10415 239 aa2□□□□□ -2.09
VPS13C-210ENST00000561258 ROMO1P60602 79 aa2□□□□□ -2.09
VPS13C-210ENST00000561258 HBBP68871 147 aa2□□□□□ -2.09
VPS13C-210ENST00000561258 CROCCP2Q86T23 111 aa2□□□□□ -2.09
VPS13C-210ENST00000561258 LZICQ8WZA0 190 aa2□□□□□ -2.09
VPS13C-210ENST00000561258 TPT1P8Q9HAU6 139 aa2□□□□□ -2.09
VPS13C-210ENST00000561258 OR5AC2Q9NZP5 309 aa2□□□□□ -2.09
VPS13C-210ENST00000561258 NAT8BQ9UHF3 227 aa2□□□□□ -2.09
VPS13C-210ENST00000561258 LAMTOR2Q9Y2Q5 125 aa2□□□□□ -2.09
VPS13C-210ENST00000561258 K7ERJ3 54 aa1.99□□□□□ -2.09
VPS13C-210ENST00000561258 CST7O76096 145 aa1.99□□□□□ -2.09
VPS13C-210ENST00000561258 NDUFA3O95167 84 aa1.99□□□□□ -2.09
VPS13C-210ENST00000561258 RPL7P18124 248 aaKnown RBP1.99□□□□□ -2.09
VPS13C-210ENST00000561258 S100A11P31949 105 aa1.99□□□□□ -2.09
VPS13C-210ENST00000561258 RPS27P42677 84 aaKnown RBP1.99□□□□□ -2.09
Retrieved 100 of 20,778 RNA–protein pairs in 63.9 ms