RNA–Protein interactions for RNA: ENST00000560299.1

SPG11-221, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 3

Gene SPG11, Length 437 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-221ENST00000560299 KLK5Q9Y337 293 aaPredicted RBP4.48□□□□□ -1.69
SPG11-221ENST00000560299 A0A096LNJ9 63 aa4.47□□□□□ -1.69
SPG11-221ENST00000560299 LOC105371267A0A1B0GV96 52 aa4.47□□□□□ -1.69
SPG11-221ENST00000560299 NUPR2A6NF83 97 aa4.47□□□□□ -1.69
SPG11-221ENST00000560299 IGLL5B9A064 214 aa4.47□□□□□ -1.69
SPG11-221ENST00000560299 ZNF25P17030 456 aaPredicted RBP4.47□□□□□ -1.69
SPG11-221ENST00000560299 RPL39P62891 51 aaKnown RBP4.47□□□□□ -1.69
SPG11-221ENST00000560299 CASC10Q5T4H9 136 aa4.47□□□□□ -1.69
SPG11-221ENST00000560299 LELP1Q5T871 98 aa4.47□□□□□ -1.69
SPG11-221ENST00000560299 PET117Q6UWS5 81 aa4.47□□□□□ -1.69
SPG11-221ENST00000560299 NTM-AS1Q6ZSK4 140 aa4.47□□□□□ -1.69
SPG11-221ENST00000560299 CHCHD5Q9BSY4 110 aa4.47□□□□□ -1.69
SPG11-221ENST00000560299 CHCHD7Q9BUK0 85 aa4.47□□□□□ -1.69
SPG11-221ENST00000560299 PYGO1Q9Y3Y4 419 aa4.47□□□□□ -1.69
SPG11-221ENST00000560299 CSDC2Q9Y534 153 aaKnown RBP4.47□□□□□ -1.69
SPG11-221ENST00000560299 DNAH1Q9P2D7 4330 aa4.46□□□□□ -1.69
SPG11-221ENST00000560299 IGKV2D-29A0A075B6S2 120 aaPredicted RBP4.46□□□□□ -1.7
SPG11-221ENST00000560299 IGKV2-29A2NJV5 120 aaPredicted RBP4.46□□□□□ -1.7
SPG11-221ENST00000560299 IFITM10A6NMD0 228 aa4.46□□□□□ -1.7
SPG11-221ENST00000560299 TMEM262E9PQX1 116 aa4.46□□□□□ -1.7
SPG11-221ENST00000560299 SYS1-DBNDD2H3BUS1 97 aa4.46□□□□□ -1.7
SPG11-221ENST00000560299 SCGB1D1O95968 90 aa4.46□□□□□ -1.7
SPG11-221ENST00000560299 C3orf79P0CE67 100 aa4.46□□□□□ -1.7
SPG11-221ENST00000560299 FGF6P10767 208 aa4.46□□□□□ -1.7
SPG11-221ENST00000560299 CCL18P55774 89 aa4.46□□□□□ -1.7
SPG11-221ENST00000560299 CEMP1Q6PRD7 247 aaPredicted RBP4.46□□□□□ -1.7
SPG11-221ENST00000560299 SPATA12Q7Z6I5 190 aa4.46□□□□□ -1.7
SPG11-221ENST00000560299 OR5A1Q8NGJ0 315 aa4.46□□□□□ -1.7
SPG11-221ENST00000560299 C2orf88Q9BSF0 95 aa4.46□□□□□ -1.7
SPG11-221ENST00000560299 VCX2Q9H322 139 aa4.46□□□□□ -1.7
SPG11-221ENST00000560299 PLECQ15149 4684 aaKnown RBP4.45□□□□□ -1.7
SPG11-221ENST00000560299 SACSQ9NZJ4 4579 aa4.45□□□□□ -1.7
SPG11-221ENST00000560299 A0A087WX48 190 aa4.45□□□□□ -1.7
SPG11-221ENST00000560299 TRAV12-1A0A0B4J245 112 aa4.45□□□□□ -1.7
SPG11-221ENST00000560299 A0A1B0GUV1 79 aa4.45□□□□□ -1.7
SPG11-221ENST00000560299 IGIPA6NJ69 53 aa4.45□□□□□ -1.7
SPG11-221ENST00000560299 H0Y8G0 127 aa4.45□□□□□ -1.7
SPG11-221ENST00000560299 MRPS36P82909 103 aaKnown RBP4.45□□□□□ -1.7
SPG11-221ENST00000560299 PMVKQ15126 192 aa4.45□□□□□ -1.7
SPG11-221ENST00000560299 LYPD5Q6UWN5 251 aa4.45□□□□□ -1.7
SPG11-221ENST00000560299 TEX43Q6ZNM6 134 aa4.45□□□□□ -1.7
SPG11-221ENST00000560299 MRPL52Q86TS9 123 aaKnown RBP4.45□□□□□ -1.7
SPG11-221ENST00000560299 UBE2D4Q9Y2X8 147 aa4.45□□□□□ -1.7
SPG11-221ENST00000560299 STARD9Q9P2P6 4700 aa4.45□□□□□ -1.7
SPG11-221ENST00000560299 SEC11AP67812 179 aa4.44□□□□□ -1.7
SPG11-221ENST00000560299 GAGE6Q13070 117 aa4.44□□□□□ -1.7
SPG11-221ENST00000560299 JOSD1Q15040 202 aaPredicted RBP4.44□□□□□ -1.7
SPG11-221ENST00000560299 LGALS9CQ6DKI2 356 aa4.44□□□□□ -1.7
SPG11-221ENST00000560299 LINC00173Q6ZV60 143 aa4.44□□□□□ -1.7
SPG11-221ENST00000560299 BAALCQ8WXS3 180 aa4.44□□□□□ -1.7
SPG11-221ENST00000560299 IGLV4-3A0A075B6K6 122 aa4.43□□□□□ -1.7
SPG11-221ENST00000560299 PRSS29PA6NIE9 313 aa4.43□□□□□ -1.7
SPG11-221ENST00000560299 HSBP1L1C9JCN9 74 aa4.43□□□□□ -1.7
SPG11-221ENST00000560299 SMIM6P0DI80 62 aa4.43□□□□□ -1.7
SPG11-221ENST00000560299 PLNP26678 52 aa4.43□□□□□ -1.7
SPG11-221ENST00000560299 S100A12P80511 92 aa4.43□□□□□ -1.7
SPG11-221ENST00000560299 ESRGQ1W209 222 aa4.43□□□□□ -1.7
SPG11-221ENST00000560299 LINC01545Q5VT33 79 aa4.43□□□□□ -1.7
SPG11-221ENST00000560299 ZNF664Q8N3J9 261 aa4.43□□□□□ -1.7
SPG11-221ENST00000560299 CST9LQ9H4G1 147 aa4.43□□□□□ -1.7
SPG11-221ENST00000560299 CDC42SE2Q9NRR3 84 aa4.43□□□□□ -1.7
SPG11-221ENST00000560299 CHTOPQ9Y3Y2 248 aaKnown RBP4.43□□□□□ -1.7
SPG11-221ENST00000560299 VPS13DQ5THJ4 4388 aa4.43□□□□□ -1.7
SPG11-221ENST00000560299 RYR2Q92736 4967 aa4.42□□□□□ -1.7
SPG11-221ENST00000560299 TRAV9-2A0A087WT02 112 aa4.42□□□□□ -1.7
SPG11-221ENST00000560299 F8VRH5 84 aa4.42□□□□□ -1.7
SPG11-221ENST00000560299 CCL25O15444 150 aa4.42□□□□□ -1.7
SPG11-221ENST00000560299 DPM2O94777 84 aa4.42□□□□□ -1.7
SPG11-221ENST00000560299 ANGP03950 147 aaKnown RBP4.42□□□□□ -1.7
SPG11-221ENST00000560299 RBX1P62877 108 aa4.42□□□□□ -1.7
SPG11-221ENST00000560299 UBE2DNLQ8IWF7 75 aa4.42□□□□□ -1.7
SPG11-221ENST00000560299 AMELXQ99217 191 aa4.42□□□□□ -1.7
SPG11-221ENST00000560299 KRTAP4-11Q9BYQ6 195 aa4.42□□□□□ -1.7
SPG11-221ENST00000560299 MRPS16Q9Y3D3 137 aaKnown RBP4.42□□□□□ -1.7
SPG11-221ENST00000560299 RYR3Q15413 4870 aa4.41□□□□□ -1.7
SPG11-221ENST00000560299 K7EP13 123 aa4.41□□□□□ -1.7
SPG11-221ENST00000560299 SIVA1O15304 175 aa4.41□□□□□ -1.7
SPG11-221ENST00000560299 IGKCP01834 107 aa4.41□□□□□ -1.7
SPG11-221ENST00000560299 ODF1Q14990 250 aa4.41□□□□□ -1.7
SPG11-221ENST00000560299 SS18Q15532 418 aa4.41□□□□□ -1.7
SPG11-221ENST00000560299 MPV17L2Q567V2 206 aa4.41□□□□□ -1.7
SPG11-221ENST00000560299 PYY3Q5JQD4 70 aa4.41□□□□□ -1.7
SPG11-221ENST00000560299 Q6ZUT4 128 aa4.41□□□□□ -1.7
SPG11-221ENST00000560299 C10orf126Q8N4M7 172 aa4.41□□□□□ -1.7
SPG11-221ENST00000560299 OPRPNQ99935 248 aaPredicted RBP4.41□□□□□ -1.7
SPG11-221ENST00000560299 GEMIN7Q9H840 131 aaKnown RBP4.41□□□□□ -1.7
SPG11-221ENST00000560299 MRPL35Q9NZE8 188 aaKnown RBP4.41□□□□□ -1.7
SPG11-221ENST00000560299 APLNQ9ULZ1 77 aa4.41□□□□□ -1.7
SPG11-221ENST00000560299 LYSTQ99698 3801 aa4.4□□□□□ -1.7
SPG11-221ENST00000560299 IGLV4-60A0A075B6I1 120 aa4.4□□□□□ -1.71
SPG11-221ENST00000560299 TRAV13-1A0A0B4J241 112 aa4.4□□□□□ -1.71
SPG11-221ENST00000560299 LCE6AA0A183 80 aa4.4□□□□□ -1.71
SPG11-221ENST00000560299 TINCRA0A1B0GVN0 87 aa4.4□□□□□ -1.71
SPG11-221ENST00000560299 CRPP02741 224 aa4.4□□□□□ -1.71
SPG11-221ENST00000560299 HERVK_113P61574 105 aa4.4□□□□□ -1.71
SPG11-221ENST00000560299 HERVK_113P63121 156 aa4.4□□□□□ -1.71
SPG11-221ENST00000560299 RNASE13Q5GAN3 156 aaKnown RBP4.4□□□□□ -1.71
SPG11-221ENST00000560299 LINC01556Q5JQF7 62 aa4.4□□□□□ -1.71
SPG11-221ENST00000560299 Q8N976 141 aa4.4□□□□□ -1.71
SPG11-221ENST00000560299 PMCHL2Q9BQD1 86 aa4.4□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms