RNA–Protein interactions for RNA: ENST00000559898.5

HDDC3-205, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,024 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-205ENST00000559898 CCL25O15444 150 aa11.22□□□□□ -0.61
HDDC3-205ENST00000559898 ADIRFQ15847 76 aa11.22□□□□□ -0.61
HDDC3-205ENST00000559898 TMEM241Q24JQ0 296 aa11.22□□□□□ -0.61
HDDC3-205ENST00000559898 TRBV27A0A0K0K1C4 114 aa11.21□□□□□ -0.61
HDDC3-205ENST00000559898 RNASE13Q5GAN3 156 aaKnown RBP11.21□□□□□ -0.61
HDDC3-205ENST00000559898 MRAP2Q96G30 205 aa11.21□□□□□ -0.61
HDDC3-205ENST00000559898 CDC42SE2Q9NRR3 84 aa11.21□□□□□ -0.61
HDDC3-205ENST00000559898 GVQW2A0A096LPI5 108 aaPredicted RBP11.2□□□□□ -0.62
HDDC3-205ENST00000559898 TRAV16A0A0A6YYK6 109 aaPredicted RBP11.2□□□□□ -0.62
HDDC3-205ENST00000559898 MRPL51Q4U2R6 128 aaKnown RBP11.2□□□□□ -0.62
HDDC3-205ENST00000559898 DPH3Q96FX2 82 aa11.2□□□□□ -0.62
HDDC3-205ENST00000559898 HMCN2Q8NDA2 5059 aa11.19□□□□□ -0.62
HDDC3-205ENST00000559898 IGKV2-24A0A0C4DH68 120 aa11.19□□□□□ -0.62
HDDC3-205ENST00000559898 ZNF25P17030 456 aaPredicted RBP11.19□□□□□ -0.62
HDDC3-205ENST00000559898 RIGQ13278 110 aa11.19□□□□□ -0.62
HDDC3-205ENST00000559898 A0A096LNI7 61 aa11.18□□□□□ -0.62
HDDC3-205ENST00000559898 OXTP01178 125 aa11.18□□□□□ -0.62
HDDC3-205ENST00000559898 CFAP161Q6P656 301 aa11.18□□□□□ -0.62
HDDC3-205ENST00000559898 MRPL52Q86TS9 123 aaKnown RBP11.18□□□□□ -0.62
HDDC3-205ENST00000559898 TMEM101Q96IK0 257 aa11.18□□□□□ -0.62
HDDC3-205ENST00000559898 BTF3L4Q96K17 158 aa11.18□□□□□ -0.62
HDDC3-205ENST00000559898 NAT8Q9UHE5 227 aa11.18□□□□□ -0.62
HDDC3-205ENST00000559898 SMIM27A0A1W2PRY6 76 aa11.17□□□□□ -0.62
HDDC3-205ENST00000559898 C7orf77A4D0Y5 90 aa11.17□□□□□ -0.62
HDDC3-205ENST00000559898 PHOX2AO14813 284 aa11.17□□□□□ -0.62
HDDC3-205ENST00000559898 CAMPP49913 170 aa11.17□□□□□ -0.62
HDDC3-205ENST00000559898 MAJINQ3KP22 176 aa11.17□□□□□ -0.62
HDDC3-205ENST00000559898 FAM74A3Q4VXF1 159 aa11.17□□□□□ -0.62
HDDC3-205ENST00000559898 FAM104BQ5XKR9 115 aa11.17□□□□□ -0.62
HDDC3-205ENST00000559898 ZNF664Q8N3J9 261 aa11.17□□□□□ -0.62
HDDC3-205ENST00000559898 PLAC8Q9NZF1 115 aa11.17□□□□□ -0.62
HDDC3-205ENST00000559898 NAT8BQ9UHF3 227 aa11.17□□□□□ -0.62
HDDC3-205ENST00000559898 MT1HL1P0DM35 61 aa11.16□□□□□ -0.62
HDDC3-205ENST00000559898 SUMO2P61956 95 aaKnown RBP11.16□□□□□ -0.62
HDDC3-205ENST00000559898 UBE2D4Q9Y2X8 147 aa11.16□□□□□ -0.62
HDDC3-205ENST00000559898 VCYO14598 125 aa11.15□□□□□ -0.62
HDDC3-205ENST00000559898 FAM104AQ969W3 186 aa11.15□□□□□ -0.62
HDDC3-205ENST00000559898 MRPL54Q6P161 138 aaKnown RBP11.14□□□□□ -0.63
HDDC3-205ENST00000559898 Q6ZUT4 128 aa11.14□□□□□ -0.63
HDDC3-205ENST00000559898 FCER1GP30273 86 aa11.13□□□□□ -0.63
HDDC3-205ENST00000559898 RPL39P62891 51 aaKnown RBP11.13□□□□□ -0.63
HDDC3-205ENST00000559898 CD164L2Q6UWJ8 174 aa11.13□□□□□ -0.63
HDDC3-205ENST00000559898 STPG4Q8N801 248 aa11.13□□□□□ -0.63
HDDC3-205ENST00000559898 IGHV1-58A0A0C4DH39 117 aa11.12□□□□□ -0.63
HDDC3-205ENST00000559898 PEA15Q15121 130 aa11.12□□□□□ -0.63
HDDC3-205ENST00000559898 SS18Q15532 418 aa11.12□□□□□ -0.63
HDDC3-205ENST00000559898 OPRPNQ99935 248 aaPredicted RBP11.12□□□□□ -0.63
HDDC3-205ENST00000559898 TNXBP22105 4242 aa11.12□□□□□ -0.63
HDDC3-205ENST00000559898 A0A1B0GXF2 115 aa11.11□□□□□ -0.63
HDDC3-205ENST00000559898 TRAV13-1A0A0B4J241 112 aa11.1□□□□□ -0.63
HDDC3-205ENST00000559898 D6R8Y8 96 aa11.1□□□□□ -0.63
HDDC3-205ENST00000559898 TNFRSF6BO95407 300 aa11.1□□□□□ -0.63
HDDC3-205ENST00000559898 NPYP01303 97 aa11.1□□□□□ -0.63
HDDC3-205ENST00000559898 CARD19Q96LW7 228 aa11.1□□□□□ -0.63
HDDC3-205ENST00000559898 IGLV4-69A0A075B6H9 119 aa11.09□□□□□ -0.63
HDDC3-205ENST00000559898 CKS2P33552 79 aa11.09□□□□□ -0.63
HDDC3-205ENST00000559898 ODF1Q14990 250 aa11.09□□□□□ -0.63
HDDC3-205ENST00000559898 Q6ZRU5 148 aa11.09□□□□□ -0.63
HDDC3-205ENST00000559898 C5orf38Q86SI9 138 aa11.09□□□□□ -0.63
HDDC3-205ENST00000559898 TRBV24-1A0A075B6N3 115 aa11.08□□□□□ -0.64
HDDC3-205ENST00000559898 TCAPO15273 167 aa11.08□□□□□ -0.64
HDDC3-205ENST00000559898 SYCNQ0VAF6 134 aa11.08□□□□□ -0.64
HDDC3-205ENST00000559898 KIR2DL4Q99706 377 aa11.08□□□□□ -0.64
HDDC3-205ENST00000559898 CSDC2Q9Y534 153 aaKnown RBP11.08□□□□□ -0.64
HDDC3-205ENST00000559898 ZNF561-AS1K7EIQ3 104 aa11.06□□□□□ -0.64
HDDC3-205ENST00000559898 PPP1R2P9O14990 202 aa11.06□□□□□ -0.64
HDDC3-205ENST00000559898 HBBP68871 147 aa11.06□□□□□ -0.64
HDDC3-205ENST00000559898 PRR3P79522 188 aaKnown RBP11.06□□□□□ -0.64
HDDC3-205ENST00000559898 C20orf78Q9BR46 151 aa11.06□□□□□ -0.64
HDDC3-205ENST00000559898 SMIM2Q9BVW6 85 aa11.06□□□□□ -0.64
HDDC3-205ENST00000559898 A0A0J9YXV3 536 aa11.05□□□□□ -0.64
HDDC3-205ENST00000559898 LINC00862A6NCI5 91 aa11.05□□□□□ -0.64
HDDC3-205ENST00000559898 C1orf196B1AJZ1 125 aa11.05□□□□□ -0.64
HDDC3-205ENST00000559898 COX7A2LO14548 114 aa11.05□□□□□ -0.64
HDDC3-205ENST00000559898 PPP1R17O96001 155 aa11.05□□□□□ -0.64
HDDC3-205ENST00000559898 SERTAD4-AS1Q5TG53 156 aa11.05□□□□□ -0.64
HDDC3-205ENST00000559898 RPL32P62910 135 aaKnown RBP11.04□□□□□ -0.64
HDDC3-205ENST00000559898 C7orf33Q8WU49 177 aa11.04□□□□□ -0.64
HDDC3-205ENST00000559898 TIMM21Q9BVV7 248 aa11.04□□□□□ -0.64
HDDC3-205ENST00000559898 SMDT1Q9H4I9 107 aa11.04□□□□□ -0.64
HDDC3-205ENST00000559898 A0A1B0GW15 77 aa11.03□□□□□ -0.64
HDDC3-205ENST00000559898 A0A1W2PNN7 141 aa11.03□□□□□ -0.64
HDDC3-205ENST00000559898 MALP21145 153 aa11.03□□□□□ -0.64
HDDC3-205ENST00000559898 PTTG1IPP53801 180 aa11.03□□□□□ -0.64
HDDC3-205ENST00000559898 GAGE2BQ13066 116 aa11.03□□□□□ -0.64
HDDC3-205ENST00000559898 UBR4Q5T4S7 5183 aa11.03□□□□□ -0.64
HDDC3-205ENST00000559898 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP11.01□□□□□ -0.65
HDDC3-205ENST00000559898 CAMK2N2Q96S95 79 aa11.01□□□□□ -0.65
HDDC3-205ENST00000559898 PLA2G2DQ9UNK4 145 aa11.01□□□□□ -0.65
HDDC3-205ENST00000559898 ZC2HC1BQ5TFG8 222 aa11□□□□□ -0.65
HDDC3-205ENST00000559898 LOC107984640A0A0U1RRK4 108 aa10.99□□□□□ -0.65
HDDC3-205ENST00000559898 F8W036 122 aa10.99□□□□□ -0.65
HDDC3-205ENST00000559898 SPAG11BQ08648 103 aa10.99□□□□□ -0.65
HDDC3-205ENST00000559898 C10orf25Q5T742 122 aa10.99□□□□□ -0.65
HDDC3-205ENST00000559898 TMEM136Q6ZRR5 245 aa10.99□□□□□ -0.65
HDDC3-205ENST00000559898 PRELID3AQ96N28 172 aa10.99□□□□□ -0.65
HDDC3-205ENST00000559898 IGHV3OR16-9A0A0B4J2B5 98 aa10.98□□□□□ -0.65
HDDC3-205ENST00000559898 LOC389332A0A1B0GUA5 103 aa10.98□□□□□ -0.65
HDDC3-205ENST00000559898 TMEM18Q96B42 140 aa10.98□□□□□ -0.65
HDDC3-205ENST00000559898 S100A8P05109 93 aa10.97□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms